IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.32   STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1985	 61.25	+1	2491955..2493781	-	608	117925303	-	Mmc1_2013	-	zinc finger SWIM domain-containing protein
1986	 60.62	+1	2493874..2494782	+	302	117925304	-	Mmc1_2014	-	hypothetical protein
1987	 56.94	0	2494863..2500094	+	1743	117925305	-	Mmc1_2015	-	DEAD/DEAH box helicase domain-containing protein
1988	 61.47	+1	2500120..2502966	+	948	117925306	-	Mmc1_2016	-	helicase domain-containing protein
1989	 60.84	+1	2502981..2507045	+	1354	117925307	-	Mmc1_2017	-	putative type II DNA modification enzyme
1990	 45.57	-2	2507047..2508027	+	326	117925308	-	Mmc1_2018	-	hypothetical protein
1991	 46.07	-1	2508029..2508727	+	232	117925309	-	Mmc1_2019	-	hypothetical protein
1992	 46.39	-1	2508729..2509157	+	142	117925310	-	Mmc1_2020	-	hypothetical protein
1993	 60.56	+1	2509313..2509525	+	70	117925311	-	Mmc1_2021	-	hypothetical protein
1994	 59.57	+1	2509535..2509816	-	93	117925312	-	Mmc1_2022	-	hypothetical protein
1995	 48.39	-1	2510042..2510599	-	185	117925313	-	Mmc1_2023	-	hypothetical protein
1996	 50.57	0	2510734..2511174	-	146	117925314	-	Mmc1_2024	-	heat shock protein Hsp20
1997	 53.71	0	2511362..2512357	+	331	117925315	-	Mmc1_2025	-	peptidase M48, Ste24p
1998	 53.73	0	2512570..2512770	-	66	117925316	-	Mmc1_2026	-	hypothetical protein
1999	 62.24	+1	2512772..2514148	-	458	117925317	-	Mmc1_2027	-	hypothetical protein
2000	 58.22	0	2514145..2515281	-	378	117925318	-	Mmc1_2028	-	hypothetical protein
2001	 55.30	0	2515285..2515671	-	128	117925319	-	Mmc1_2029	-	hypothetical protein
2002	 54.41	0	2515683..2516204	-	173	117925320	-	Mmc1_2030	-	hypothetical protein
2003	 58.46	0	2516179..2517153	-	324	117925321	-	Mmc1_2031	-	hypothetical protein
2004	 57.10	0	2517153..2518187	-	344	117925322	-	Mmc1_2032	-	hypothetical protein
2005	 56.83	0	2518193..2518558	-	121	117925323	-	Mmc1_2033	-	putative transmembrane protein
2006	 59.09	+1	2518566..2522117	-	1183	117925324	-	Mmc1_2034	-	TP901 family phage tail tape measure protein
2007	 49.12	-1	2522205..2522432	+	75	117925325	-	Mmc1_2035	-	hypothetical protein
2008	 52.87	0	2522425..2522859	+	144	117925326	-	Mmc1_2036	-	hypothetical protein
2009	 55.47	0	2522919..2523311	-	130	117925327	-	Mmc1_2037	-	hypothetical protein
2010	 55.33	0	2523317..2524057	-	246	117925328	-	Mmc1_2038	-	hypothetical protein
2011	 51.34	0	2524063..2524473	-	136	117925329	-	Mmc1_2039	-	hypothetical protein
2012	 56.67	0	2524475..2524834	-	119	117925330	-	Mmc1_2040	-	hypothetical protein
2013	 55.99	0	2524837..2525754	-	305	117925331	-	Mmc1_2041	-	hypothetical protein
2014	 56.20	0	2525766..2526023	-	85	117925332	-	Mmc1_2042	-	hypothetical protein
2015	 59.75	+1	2526026..2526343	-	105	117925333	-	Mmc1_2043	-	hypothetical protein
2016	 56.02	0	2526346..2527359	-	337	117925334	-	Mmc1_2044	-	hypothetical protein
2017	 60.51	+1	2527362..2528027	-	221	117925335	-	Mmc1_2045	-	putative phage protein GP19
2018	 58.60	+1	2528045..2529346	-	433	117925336	-	Mmc1_2046	-	serine peptidase
2019	 42.19	-2	2529402..2529875	+	157	117925337	-	Mmc1_2047	-	response regulator receiver protein
2020	 58.05	0	2529942..2531426	-	494	117925338	-	Mmc1_2048	-	lambda family phage portal protein
2021	 56.81	0	2531426..2531638	-	70	117925339	-	Mmc1_2049	-	hypothetical protein
2022	 57.78	0	2531961..2533817	-	618	117925340	-	Mmc1_2050	-	phage terminase GpA
2023	 55.05	0	2533912..2534109	+	65	117925341	-	Mmc1_2051	-	hypothetical protein
2024	 54.17	0	2534136..2534519	+	127	117925342	-	Mmc1_2052	-	hypothetical protein
2025	 55.85	0	2534572..2535246	+	224	117925343	-	Mmc1_2053	-	hypothetical protein
2026	 55.07	0	2535310..2535585	-	91	117925344	-	Mmc1_2054	-	histone family protein DNA-binding protein
2027	 58.72	+1	2535678..2537024	-	448	117925345	-	Mmc1_2055	-	nuclease
2028	 59.57	+1	2537017..2537580	-	187	117925346	-	Mmc1_2056	-	hypothetical protein
2029	 48.65	-1	2537670..2538557	-	295	117925347	-	Mmc1_2057	-	HNH nuclease
2030	 50.79	0	2538689..2538940	+	83	117925348	-	Mmc1_2058	-	CopG/Arc/MetJ family transcriptional regulator
2031	 48.87	-1	2538937..2539245	+	102	117925349	-	Mmc1_2059	-	plasmid stabilization system protein
2032	 58.46	0	2539247..2539843	-	198	117925350	-	Mmc1_2060	-	hypothetical protein
2033	 60.94	+1	2539840..2540136	-	98	117925351	-	Mmc1_2061	-	hypothetical protein
2034	 56.08	0	2540133..2540321	-	62	117925352	-	Mmc1_2062	-	hypothetical protein
2035	 48.55	-1	2540424..2540699	+	91	117925353	-	Mmc1_2063	-	histone family protein DNA-binding protein
2036	 56.14	0	2540702..2541100	-	132	117925354	-	Mmc1_2064	-	peptidase M15A
2037	 50.55	0	2541281..2542012	-	243	117925355	-	Mmc1_2065	-	deoxyribonuclease I
2038	 51.20	0	2542030..2542320	-	96	117925356	-	Mmc1_2066	-	histone family protein DNA-binding protein
2039	 57.64	0	2542455..2542853	-	132	117925357	-	Mmc1_2067	-	hypothetical protein
2040	 57.53	0	2542846..2543064	-	72	117925358	-	Mmc1_2068	-	hypothetical protein
2041	 59.48	+1	2543061..2543561	-	166	117925359	-	Mmc1_2069	-	putative bacteriophage-related protein
2042	 55.70	0	2544225..2546375	-	716	117925360	-	Mmc1_2070	-	TOPRIM domain-containing protein
2043	 56.50	0	2546372..2547148	-	258	117925361	-	Mmc1_2071	-	hypothetical protein
2044	 51.04	0	2547145..2547867	-	240	117925362	-	Mmc1_2072	-	hypothetical protein
2045	 55.63	0	2547882..2548307	-	141	117925363	-	Mmc1_2073	-	hypothetical protein
2046	 54.55	0	2548307..2549989	-	560	117925364	-	Mmc1_2074	-	type III restriction enzyme, res subunit
2047	 49.25	-1	2549986..2550651	-	221	117925365	-	Mmc1_2075	-	hypothetical protein
2048	 53.33	0	2550663..2551307	-	214	117925366	-	Mmc1_2076	-	hypothetical protein
2049	 59.47	+1	2551313..2552215	-	300	117925367	-	Mmc1_2077	-	hypothetical protein
2050	 52.59	0	2552212..2552694	-	160	117925368	-	Mmc1_2078	-	hypothetical protein
2051	 51.97	0	2552735..2553673	-	312	117925369	-	Mmc1_2079	-	hypothetical protein
2052	 53.26	0	2553865..2554431	-	188	117925370	-	Mmc1_2080	-	sigma-24 (FecI-like)
2053	 53.13	0	2554718..2555116	-	132	117925371	-	Mmc1_2081	-	SOS-response transcriptional repressor, LexA
2054	 51.77	0	2555113..2556099	-	328	117925372	-	Mmc1_2082	-	hypothetical protein
2055	 51.09	0	2556146..2557339	-	397	117925373	-	Mmc1_2083	-	hypothetical protein
2056	 54.89	0	2557353..2558048	-	231	117925374	-	Mmc1_2084	-	SOS-response transcriptional repressor, LexA
2057	 50.51	0	2558234..2558629	+	131	117925375	-	Mmc1_2085	-	hypothetical protein
2058	 53.51	0	2558829..2559284	+	151	117925376	-	Mmc1_2086	-	hypothetical protein
2059	 54.39	0	2559281..2560624	+	447	117925377	-	Mmc1_2087	-	recombinase
2060	 55.80	0	2560621..2561034	+	137	117925378	-	Mmc1_2088	-	hypothetical protein
2061	 49.14	-1	2561059..2561754	-	231	117925379	-	Mmc1_2089	-	hypothetical protein
2062	 58.87	+1	2562578..2562808	-	76	117925380	-	Mmc1_2090	-	hypothetical protein
2063	 56.19	0	2562849..2563907	+	352	117925381	-	Mmc1_2091	-	hypothetical protein
2064	 50.83	0	2563904..2566429	+	841	117925382	-	Mmc1_2092	-	multi-sensor signal transduction histidine kinase
2065	 52.66	0	2566426..2567046	+	206	117925383	-	Mmc1_2093	-	two component LuxR family transcriptional regulator
2066	 53.33	0	2567296..2567610	+	104	117925384	-	Mmc1_2094	-	anti-sigma-factor antagonist
2067	 54.63	0	2567618..2568805	-	395	117925385	-	Mmc1_2095	-	hypothetical protein
2068	 55.60	0	2569631..2570443	-	270	117925386	-	Mmc1_2096	-	undecaprenyl-diphosphatase
2069	 60.27	+1	2570533..2570751	+	72	117925387	-	Mmc1_2097	-	heavy metal transport/detoxification protein
2070	 57.69	0	2570853..2571665	-	270	117925388	-	Mmc1_2098	-	tRNA pseudouridine synthase A
2071	 55.42	0	2571730..2572227	-	165	117925389	-	Mmc1_2099	-	hypothetical protein
2072	 51.55	0	2572502..2573275	+	257	117925390	-	Mmc1_2100	-	cobyrinic acid a,c-diamide synthase
2073	 50.00	-1	2573441..2573812	+	123	117925391	-	Mmc1_2101	-	hypothetical protein
2074	 58.70	+1	2573962..2574852	-	296	117925392	cysM	Mmc1_2102	-	cysteine synthase B
2075	 59.97	+1	2574955..2575596	+	213	117925393	-	Mmc1_2103	-	ABC transporter related
2076	 58.21	0	2575593..2576396	+	267	117925394	-	Mmc1_2104	-	hypothetical protein
2077	 60.53	+1	2576772..2577488	+	238	117925395	-	Mmc1_2105	-	SOS mutagenesis protein UmuD
2078	 59.72	+1	2577490..2578755	+	421	117925396	-	Mmc1_2106	-	DNA-directed DNA polymerase
2079	 58.28	0	2578855..2580369	-	504	117925397	-	Mmc1_2107	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2080	 60.36	+1	2580371..2581369	-	332	117925398	-	Mmc1_2108	-	hypothetical protein
2081	 58.11	0	2581366..2582253	-	295	117925399	-	Mmc1_2109	-	hypothetical protein
2082	 54.91	0	2582331..2583521	-	396	117925400	-	Mmc1_2110	-	aldo/keto reductase
2083	 45.58	-2	2583893..2584831	+	312	117925401	-	Mmc1_2111	-	hypothetical protein
2084	 49.88	-1	2584844..2588929	+	1361	117925402	-	Mmc1_2112	-	Cache sensor hybrid histidine kinase
54.32	MEAN

4.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.