IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1770	 50.56	0	2213971..2214330	-	119	117925088	-	Mmc1_1791	-	IS66 Orf2 family protein
1771	 50.88	0	2214330..2214671	-	113	117925089	-	Mmc1_1792	-	hypothetical protein
1772	 51.54	0	2215043..2216887	-	614	117925090	-	Mmc1_1793	-	acetyl-CoA hydrolase/transferase
1773	 47.91	-1	2217361..2219130	+	589	117925091	-	Mmc1_1794	-	periplasmic sensor signal transduction histidine kinase
1774	 49.93	-1	2219242..2221386	-	714	117925092	-	Mmc1_1795	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1775	 49.50	-1	2221595..2224210	-	871	117925093	-	Mmc1_1796	-	PAS/PAC sensor hybrid histidine kinase
1776	 53.48	0	2224709..2225929	+	406	117925094	-	Mmc1_1797	-	permease
1777	 48.45	-1	2225926..2226183	-	85	117925095	-	Mmc1_1798	-	hypothetical protein
1778	 50.77	0	2226176..2227150	-	324	117925096	-	Mmc1_1799	-	DMSO reductase anchor subunit
1779	 53.28	0	2227218..2227904	-	228	117925097	-	Mmc1_1800	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1780	 54.05	0	2227948..2230833	-	961	117925098	-	Mmc1_1801	-	molybdopterin oxidoreductase
1781	 54.11	0	2231185..2233653	+	822	117925099	-	Mmc1_1802	-	TPR repeat-containing protein
1782	 45.10	-2	2233769..2234584	+	271	117925100	-	Mmc1_1803	-	cyclic nucleotide-binding protein
1783	 50.93	0	2234895..2235218	+	107	117925101	-	Mmc1_1804	-	putative transmembrane anti-sigma factor
1784	 46.86	-1	2235285..2236223	-	312	117925102	-	Mmc1_1805	-	response regulator receiver modulated CheW protein
1785	 58.83	+1	2236320..2237072	-	250	117925103	-	Mmc1_1806	-	hypothetical protein
1786	 53.33	0	2237180..2237584	+	134	117925104	-	Mmc1_1807	-	hypothetical protein
1787	 51.41	0	2237568..2238950	-	460	117925105	-	Mmc1_1808	-	hypothetical protein
1788	 55.17	0	2238940..2239965	-	341	117925106	-	Mmc1_1809	-	ABC transporter related
1789	 54.37	0	2240060..2240815	-	251	117925107	-	Mmc1_1810	-	molybdopterin binding domain-containing protein
1790	 51.70	0	2241442..2242410	+	322	117925108	-	Mmc1_1811	-	OmpA/MotB domain-containing protein
1791	 52.88	0	2242665..2243375	+	236	117925109	-	Mmc1_1812	-	hypothetical protein
1792	 46.46	-1	2243803..2245341	+	512	117925110	-	Mmc1_1813	-	response regulator receiver modulated metal dependent phosphohydrolase
1793	 47.94	-1	2245739..2246053	-	104	117925111	-	Mmc1_1814	-	hypothetical protein
1794	 47.66	-1	2247000..2247320	-	106	117925112	-	Mmc1_1815	-	putative ring-cleaving dioxygenase
1795	 50.66	0	2248030..2249391	+	453	117925113	-	Mmc1_1816	-	hydroxylamine reductase
1796	 54.19	0	2249483..2252737	-	1084	117925114	-	Mmc1_1817	-	acriflavin resistance protein
1797	 53.45	0	2252730..2253788	-	352	117925115	-	Mmc1_1818	-	RND family efflux transporter MFP subunit
1798	 50.87	0	2254219..2255136	+	305	117925116	-	Mmc1_1819	-	phosphonate-binding periplasmic protein
1799	 47.03	-1	2255136..2257478	+	780	117925117	-	Mmc1_1820	-	multi-sensor hybrid histidine kinase
1800	 47.99	-1	2257543..2259759	-	738	117925118	-	Mmc1_1821	-	adenylate/guanylate cyclase
1801	 54.07	0	2259959..2261236	-	425	117925119	-	Mmc1_1822	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
1802	 56.30	0	2261437..2262777	+	446	117925120	-	Mmc1_1823	-	hypothetical protein
1803	 48.80	-1	2262957..2263331	+	124	117925121	-	Mmc1_1824	-	response regulator receiver protein
1804	 54.93	0	2263361..2264110	+	249	117925122	-	Mmc1_1825	-	hypothetical protein
1805	 52.49	0	2264131..2264892	+	253	117925123	-	Mmc1_1826	-	hypothetical protein
1806	 53.92	0	2264899..2266365	-	488	117925124	-	Mmc1_1827	-	hypothetical protein
1807	 55.15	0	2266722..2268623	+	633	117925125	-	Mmc1_1828	-	TPR repeat-containing protein
1808	 50.38	0	2268642..2270906	-	754	117925126	-	Mmc1_1829	-	response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1809	 54.60	0	2271226..2271747	+	173	117925127	-	Mmc1_1830	-	CheW protein
1810	 50.65	0	2271761..2273308	+	515	117925128	-	Mmc1_1831	-	MCP methyltransferase, CheR-type
1811	 54.41	0	2273373..2273927	+	184	117925129	-	Mmc1_1832	-	CheW protein
1812	 52.00	0	2273920..2275467	+	515	117925130	-	Mmc1_1833	-	methyl-accepting chemotaxis sensory transducer
1813	 55.37	0	2275531..2278167	+	878	117925131	-	Mmc1_1834	-	CheA signal transduction histidine kinases
1814	 54.02	0	2278364..2279494	+	376	117925132	-	Mmc1_1835	-	response regulator receiver modulated CheB methylesterase
1815	 51.21	0	2279491..2279904	+	137	117925133	-	Mmc1_1836	-	hypothetical protein
1816	 59.99	+1	2280101..2282377	+	758	117925134	-	Mmc1_1837	-	(NiFe) hydrogenase maturation protein HypF
1817	 55.41	0	2282570..2284435	-	621	117925135	-	Mmc1_1838	-	dihydroxyacid dehydratase
1818	 52.66	0	2284589..2285209	+	206	117925136	-	Mmc1_1839	-	translation factor SUA5
1819	 54.50	0	2285481..2286269	+	262	117925137	-	Mmc1_1840	-	SSU ribosomal protein S2P
1820	 53.18	0	2286366..2287277	+	303	117925138	-	Mmc1_1841	-	translation elongation factor Ts (EF-Ts)
1821	 52.20	0	2287448..2288173	+	241	117925139	-	Mmc1_1842	-	uridylate kinase
1822	 49.10	-1	2288170..2288727	+	185	117925140	-	Mmc1_1843	-	ribosome recycling factor
1823	 50.96	0	2288863..2289594	+	243	117925141	-	Mmc1_1844	-	undecaprenyl pyrophosphate synthetase
1824	 57.34	0	2289992..2290720	+	242	117925142	-	Mmc1_1845	-	phosphatidate cytidylyltransferase
1825	 56.59	0	2290717..2291877	+	386	117925143	-	Mmc1_1846	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1826	 51.89	0	2291972..2293081	+	369	117925144	-	Mmc1_1847	-	peptidase RseP
1827	 48.22	-1	2293105..2295408	+	767	117925145	-	Mmc1_1848	-	surface antigen (D15)
1828	 48.52	-1	2295599..2296138	+	179	117925146	-	Mmc1_1849	-	outer membrane chaperone Skp (OmpH)
1829	 51.95	0	2296142..2296603	+	153	117925147	-	Mmc1_1850	-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase
1830	 55.22	0	2296596..2297381	+	261	117925148	-	Mmc1_1851	-	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
1831	 55.20	0	2297453..2298289	+	278	117925149	-	Mmc1_1852	-	hypothetical protein
1832	 54.52	0	2298286..2299281	+	331	117925150	-	Mmc1_1853	-	oxidoreductase domain-containing protein
1833	 53.21	0	2299315..2300481	+	388	117925151	-	Mmc1_1854	-	lipid-A-disaccharide synthase
1834	 49.07	-1	2300694..2301068	+	124	117925152	-	Mmc1_1855	-	thioredoxin
1835	 49.34	-1	2301440..2303500	-	686	117925153	-	Mmc1_1856	-	methionyl-tRNA synthetase
1836	 48.91	-1	2304700..2306940	+	746	117925154	-	Mmc1_1857	-	metal dependent phosphohydrolase
1837	 49.52	-1	2307067..2309271	+	734	117925155	-	Mmc1_1858	-	adenylate/guanylate cyclase
1838	 50.36	0	2309327..2309743	-	138	117925156	-	Mmc1_1859	-	holo-acyl-carrier-protein synthase
1839	 54.92	0	2309740..2310471	-	243	117925157	-	Mmc1_1860	-	pyridoxal phosphate biosynthetic protein PdxJ
1840	 51.32	0	2310493..2313927	-	1144	117925158	-	Mmc1_1861	-	membrane protein-like protein
1841	 53.99	0	2314190..2317258	+	1022	117925159	-	Mmc1_1862	-	(glutamate--ammonia-ligase) adenylyltransferase
1842	 53.92	0	2317479..2318396	+	305	117925160	-	Mmc1_1863	-	branched chain amino acid aminotransferase / branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase
1843	 54.60	0	2318490..2320172	+	560	117925161	-	Mmc1_1864	-	putative ABC transporter ATP-binding protein
1844	 51.72	0	2320324..2321454	+	376	117925162	-	Mmc1_1865	-	hypothetical protein
1845	 48.54	-1	2321558..2322379	-	273	117925163	-	Mmc1_1866	-	type IV pilus assembly PilZ
1846	 52.32	0	2322525..2323904	-	459	117925164	-	Mmc1_1867	-	TatD family hydrolase
1847	 56.56	0	2324068..2325630	-	520	117925165	-	Mmc1_1868	-	PSP1 domain-containing protein
1848	 56.69	0	2325644..2326675	-	343	117925166	-	Mmc1_1869	-	DNA polymerase III, delta prime subunit
1849	 56.87	0	2326662..2327294	-	210	117925167	-	Mmc1_1870	-	thymidylate kinase
1850	 53.91	0	2327304..2328314	-	336	117925168	-	Mmc1_1871	-	aminodeoxychorismate lyase
1851	 56.63	0	2328318..2329562	-	414	117925169	-	Mmc1_1872	-	3-oxoacyl-[acyl-carrier-protein] synthase II
1852	 51.90	0	2329842..2330078	-	78	117925170	-	Mmc1_1873	-	acyl carrier protein
1853	 51.49	0	2330280..2331017	-	245	117925171	-	Mmc1_1874	-	3-oxoacyl-[acyl-carrier-protein] reductase
1854	 58.68	+1	2331037..2331975	-	312	117925172	-	Mmc1_1875	-	[Acyl-carrier-protein] S-malonyltransferase
1855	 56.25	0	2332374..2332853	-	159	117925173	-	Mmc1_1876	-	hypothetical protein
1856	 49.57	-1	2332906..2333490	-	194	117925174	-	Mmc1_1877	-	hypothetical protein
1857	 51.28	0	2334192..2334737	-	181	117925175	-	Mmc1_1878	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1858	 54.26	0	2334750..2336603	-	617	117925176	-	Mmc1_1879	-	excinuclease ABC subunit C
1859	 52.82	0	2336587..2337402	-	271	117925177	-	Mmc1_1880	-	prolipoprotein diacylglyceryl transferase
1860	 53.51	0	2337399..2338295	-	298	117925178	-	Mmc1_1881	-	prephenate dehydratase
1861	 59.84	+1	2338399..2339160	+	253	117925179	-	Mmc1_1882	-	hypothetical protein
1862	 55.10	0	2339164..2343081	+	1305	117925180	-	Mmc1_1883	-	ATP-dependent helicase HrpA
1863	 53.60	0	2343225..2343599	-	124	117925181	-	Mmc1_1884	-	protein translocase subunit secG
1864	 56.38	0	2343687..2344454	-	255	117925182	-	Mmc1_1885	-	triosephosphate isomerase
1865	 55.00	0	2344617..2345807	-	396	117925183	-	Mmc1_1886	-	phosphoglycerate kinase
1866	 50.89	0	2345870..2346433	-	187	117925184	-	Mmc1_1887	-	hypothetical protein
1867	 51.01	0	2346865..2347554	+	229	117925185	-	Mmc1_1888	-	hypothetical protein
1868	 53.44	0	2347556..2348281	+	241	117925186	-	Mmc1_1889	-	methylthioadenosine phosphorylase
1869	 53.77	0	2348815..2349450	+	211	117925187	-	Mmc1_1890	-	2OG-Fe(II) oxygenase
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.