IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1722	 51.77	0	2155386..2156177	+	263	117925040	-	Mmc1_1743	-	hypothetical protein
1723	 51.22	0	2156247..2156492	-	81	117925041	-	Mmc1_1744	-	hypothetical protein
1724	 56.80	0	2156554..2157303	+	249	117925042	-	Mmc1_1745	-	ferredoxin
1725	 57.46	0	2157310..2158971	+	553	117925043	-	Mmc1_1746	-	L-aspartate oxidase
1726	 53.04	0	2159150..2160316	+	388	117925044	-	Mmc1_1747	-	succinyl-CoA synthetase (ADP-forming) beta subunit
1727	 56.24	0	2160319..2161191	+	290	117925045	-	Mmc1_1748	-	succinyl-CoA synthetase (ADP-forming) alpha subunit
1728	 52.73	0	2161258..2162979	+	573	117925046	-	Mmc1_1749	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
1729	 53.36	0	2162976..2163854	+	292	117925047	-	Mmc1_1750	-	pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit
1730	 52.11	0	2163872..2164510	+	212	117925048	-	Mmc1_1751	-	pentapeptide repeat-containing protein
1731	 48.33	-1	2164519..2164818	+	99	117925049	-	Mmc1_1752	-	hypothetical protein
1732	 53.74	0	2164858..2165499	+	213	117925050	-	Mmc1_1753	-	adenylate kinase
1733	 52.79	0	2165761..2167806	+	681	117925051	hppA	Mmc1_1754	-	membrane-bound proton-translocating pyrophosphatase
1734	 52.84	0	2168991..2170256	+	421	117925052	-	Mmc1_1755	-	aminotransferase
1735	 54.55	0	2170357..2171676	+	439	117925053	-	Mmc1_1756	-	homoserine dehydrogenase
1736	 59.25	+1	2171931..2173076	+	381	117925054	-	Mmc1_1757	-	hypothetical protein
1737	 58.01	0	2173076..2174854	+	592	117925055	-	Mmc1_1758	-	exonuclease RecJ
1738	 53.98	0	2175069..2176967	+	632	117925056	-	Mmc1_1759	-	transposase, IS4 family protein
1739	 53.07	0	2177072..2179381	-	769	117925057	-	Mmc1_1760	-	ATP-dependent Clp protease ATP-binding subunit ClpA
1740	 52.05	0	2179525..2179866	-	113	117925058	-	Mmc1_1761	-	ATP-dependent Clp protease adaptor protein ClpS
1741	 54.53	0	2180071..2180523	-	150	117925059	-	Mmc1_1762	-	hypothetical protein
1742	 59.77	+1	2180622..2182304	-	560	117925060	-	Mmc1_1763	-	DNA repair protein RecN
1743	 56.91	0	2182308..2183219	-	303	117925061	-	Mmc1_1764	-	NAD(+) kinase
1744	 54.77	0	2183228..2184118	-	296	117925062	-	Mmc1_1765	-	hypothetical protein
1745	 49.14	-1	2184278..2185087	+	269	117925063	-	Mmc1_1766	-	GTP cyclohydrolase
1746	 55.17	0	2185093..2186823	+	576	117925064	-	Mmc1_1767	-	prolyl-tRNA synthetase
1747	 53.12	0	2186972..2187451	+	159	117925065	-	Mmc1_1768	-	inhibitor of MCP methylation-like protein
1748	 57.19	0	2187468..2188121	+	217	117925066	-	Mmc1_1769	-	inhibitor of MCP methylation-like protein
1749	 55.56	0	2188244..2189863	-	539	117925067	-	Mmc1_1770	-	L-aspartate oxidase
1750	 51.68	0	2190208..2190801	+	197	117925068	-	Mmc1_1771	-	RNA polymerase sigma factor RpoE
1751	 51.25	0	2190903..2191382	+	159	117925069	-	Mmc1_1772	-	positive regulator of sigma(E), RseC/MucC
1752	 53.40	0	2191616..2193085	+	489	117925070	-	Mmc1_1773	-	protease Do
1753	 52.33	0	2193231..2193509	-	92	117925071	-	Mmc1_1774	-	hypothetical protein
1754	 52.45	0	2193807..2194010	+	67	117925072	-	Mmc1_1775	-	SSU ribosomal protein S21P
1755	 56.14	0	2194201..2197155	-	984	117925073	-	Mmc1_1776	-	ribonuclease E
1756	 55.62	0	2197533..2198519	+	328	117925074	-	Mmc1_1777	-	ribosomal large subunit pseudouridine synthase C
1757	 57.25	0	2198516..2199184	+	222	117925075	-	Mmc1_1778	-	HAD family hydrolase
1758	 56.98	0	2199436..2200839	+	467	117925076	-	Mmc1_1779	-	3-isopropylmalate dehydratase, large subunit
1759	 52.34	0	2200889..2201530	+	213	117925077	-	Mmc1_1780	-	3-isopropylmalate dehydratase, small subunit
1760	 55.83	0	2201586..2202665	+	359	117925078	-	Mmc1_1781	-	3-isopropylmalate dehydrogenase
1761	 51.76	0	2202783..2203802	+	339	117925079	-	Mmc1_1782	-	aspartate semialdehyde dehydrogenase
1762	 57.85	0	2203955..2205610	+	551	117925080	-	Mmc1_1783	-	hypothetical protein
1763	 59.35	+1	2205651..2206361	+	236	117925081	-	Mmc1_1784	-	hypothetical protein
1764	 57.81	0	2206372..2207568	+	398	117925082	-	Mmc1_1785	-	hypothetical protein
1765	 51.93	0	2207697..2208110	+	137	117925083	-	Mmc1_1786	-	NUDIX hydrolase
1766	 56.18	0	2208187..2209035	+	282	117925084	-	Mmc1_1787	-	hypothetical protein
1767	 52.29	0	2209070..2209375	-	101	117925085	-	Mmc1_1788	-	anti-sigma-factor antagonist
1768	 54.51	0	2209659..2212274	-	871	117925086	-	Mmc1_1789	-	methyl-accepting chemotaxis sensory transducer
1769	 52.94	0	2212355..2213935	-	526	117925087	-	Mmc1_1790	-	transposase IS66
1770	 50.56	0	2213971..2214330	-	119	117925088	-	Mmc1_1791	-	IS66 Orf2 family protein
1771	 50.88	0	2214330..2214671	-	113	117925089	-	Mmc1_1792	-	hypothetical protein
1772	 51.54	0	2215043..2216887	-	614	117925090	-	Mmc1_1793	-	acetyl-CoA hydrolase/transferase
1773	 47.91	-1	2217361..2219130	+	589	117925091	-	Mmc1_1794	-	periplasmic sensor signal transduction histidine kinase
1774	 49.93	-1	2219242..2221386	-	714	117925092	-	Mmc1_1795	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1775	 49.50	-1	2221595..2224210	-	871	117925093	-	Mmc1_1796	-	PAS/PAC sensor hybrid histidine kinase
1776	 53.48	0	2224709..2225929	+	406	117925094	-	Mmc1_1797	-	permease
1777	 48.45	-1	2225926..2226183	-	85	117925095	-	Mmc1_1798	-	hypothetical protein
1778	 50.77	0	2226176..2227150	-	324	117925096	-	Mmc1_1799	-	DMSO reductase anchor subunit
1779	 53.28	0	2227218..2227904	-	228	117925097	-	Mmc1_1800	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1780	 54.05	0	2227948..2230833	-	961	117925098	-	Mmc1_1801	-	molybdopterin oxidoreductase
1781	 54.11	0	2231185..2233653	+	822	117925099	-	Mmc1_1802	-	TPR repeat-containing protein
1782	 45.10	-2	2233769..2234584	+	271	117925100	-	Mmc1_1803	-	cyclic nucleotide-binding protein
1783	 50.93	0	2234895..2235218	+	107	117925101	-	Mmc1_1804	-	putative transmembrane anti-sigma factor
1784	 46.86	-1	2235285..2236223	-	312	117925102	-	Mmc1_1805	-	response regulator receiver modulated CheW protein
1785	 58.83	+1	2236320..2237072	-	250	117925103	-	Mmc1_1806	-	hypothetical protein
1786	 53.33	0	2237180..2237584	+	134	117925104	-	Mmc1_1807	-	hypothetical protein
1787	 51.41	0	2237568..2238950	-	460	117925105	-	Mmc1_1808	-	hypothetical protein
1788	 55.17	0	2238940..2239965	-	341	117925106	-	Mmc1_1809	-	ABC transporter related
1789	 54.37	0	2240060..2240815	-	251	117925107	-	Mmc1_1810	-	molybdopterin binding domain-containing protein
1790	 51.70	0	2241442..2242410	+	322	117925108	-	Mmc1_1811	-	OmpA/MotB domain-containing protein
1791	 52.88	0	2242665..2243375	+	236	117925109	-	Mmc1_1812	-	hypothetical protein
1792	 46.46	-1	2243803..2245341	+	512	117925110	-	Mmc1_1813	-	response regulator receiver modulated metal dependent phosphohydrolase
1793	 47.94	-1	2245739..2246053	-	104	117925111	-	Mmc1_1814	-	hypothetical protein
1794	 47.66	-1	2247000..2247320	-	106	117925112	-	Mmc1_1815	-	putative ring-cleaving dioxygenase
1795	 50.66	0	2248030..2249391	+	453	117925113	-	Mmc1_1816	-	hydroxylamine reductase
1796	 54.19	0	2249483..2252737	-	1084	117925114	-	Mmc1_1817	-	acriflavin resistance protein
1797	 53.45	0	2252730..2253788	-	352	117925115	-	Mmc1_1818	-	RND family efflux transporter MFP subunit
1798	 50.87	0	2254219..2255136	+	305	117925116	-	Mmc1_1819	-	phosphonate-binding periplasmic protein
1799	 47.03	-1	2255136..2257478	+	780	117925117	-	Mmc1_1820	-	multi-sensor hybrid histidine kinase
1800	 47.99	-1	2257543..2259759	-	738	117925118	-	Mmc1_1821	-	adenylate/guanylate cyclase
1801	 54.07	0	2259959..2261236	-	425	117925119	-	Mmc1_1822	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
1802	 56.30	0	2261437..2262777	+	446	117925120	-	Mmc1_1823	-	hypothetical protein
1803	 48.80	-1	2262957..2263331	+	124	117925121	-	Mmc1_1824	-	response regulator receiver protein
1804	 54.93	0	2263361..2264110	+	249	117925122	-	Mmc1_1825	-	hypothetical protein
1805	 52.49	0	2264131..2264892	+	253	117925123	-	Mmc1_1826	-	hypothetical protein
1806	 53.92	0	2264899..2266365	-	488	117925124	-	Mmc1_1827	-	hypothetical protein
1807	 55.15	0	2266722..2268623	+	633	117925125	-	Mmc1_1828	-	TPR repeat-containing protein
1808	 50.38	0	2268642..2270906	-	754	117925126	-	Mmc1_1829	-	response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1809	 54.60	0	2271226..2271747	+	173	117925127	-	Mmc1_1830	-	CheW protein
1810	 50.65	0	2271761..2273308	+	515	117925128	-	Mmc1_1831	-	MCP methyltransferase, CheR-type
1811	 54.41	0	2273373..2273927	+	184	117925129	-	Mmc1_1832	-	CheW protein
1812	 52.00	0	2273920..2275467	+	515	117925130	-	Mmc1_1833	-	methyl-accepting chemotaxis sensory transducer
1813	 55.37	0	2275531..2278167	+	878	117925131	-	Mmc1_1834	-	CheA signal transduction histidine kinases
1814	 54.02	0	2278364..2279494	+	376	117925132	-	Mmc1_1835	-	response regulator receiver modulated CheB methylesterase
1815	 51.21	0	2279491..2279904	+	137	117925133	-	Mmc1_1836	-	hypothetical protein
1816	 59.99	+1	2280101..2282377	+	758	117925134	-	Mmc1_1837	-	(NiFe) hydrogenase maturation protein HypF
1817	 55.41	0	2282570..2284435	-	621	117925135	-	Mmc1_1838	-	dihydroxyacid dehydratase
1818	 52.66	0	2284589..2285209	+	206	117925136	-	Mmc1_1839	-	translation factor SUA5
1819	 54.50	0	2285481..2286269	+	262	117925137	-	Mmc1_1840	-	SSU ribosomal protein S2P
1820	 53.18	0	2286366..2287277	+	303	117925138	-	Mmc1_1841	-	translation elongation factor Ts (EF-Ts)
1821	 52.20	0	2287448..2288173	+	241	117925139	-	Mmc1_1842	-	uridylate kinase
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.