IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1656	 52.98	0	2078528..2079199	+	223	117924974	-	Mmc1_1676	-	hypothetical protein
1657	 48.86	-1	2079260..2079523	-	87	117924975	-	Mmc1_1677	-	hypothetical protein
1658	 52.75	0	2079752..2081353	+	533	117924976	-	Mmc1_1678	-	peptide chain release factor 3
1659	 49.92	-1	2081806..2082402	+	198	117924977	-	Mmc1_1679	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1660	 51.78	0	2082692..2083282	+	196	117924978	-	Mmc1_1680	-	stress protein
1661	 56.02	0	2083312..2084166	+	284	117924979	-	Mmc1_1681	-	6-phosphogluconate dehydrogenase, NAD-binding
1662	 51.40	0	2084233..2084946	+	237	117924980	-	Mmc1_1682	-	hypothetical protein
1663	 50.56	0	2085246..2085953	-	235	117924981	-	Mmc1_1683	-	cob(II)yrinic acid a,c-diamide reductase
1664	 52.38	0	2086401..2087198	-	265	117924982	-	Mmc1_1684	-	hypothetical protein
1665	 50.79	0	2088082..2088774	+	230	117924983	-	Mmc1_1685	-	hypothetical protein
1666	 50.11	-1	2088957..2089391	+	144	117924984	-	Mmc1_1686	-	hypothetical protein
1667	 50.85	0	2089780..2090133	+	117	117924985	-	Mmc1_1687	-	peptidase M15A
1668	 51.75	0	2090526..2090867	+	113	117924986	-	Mmc1_1688	-	hypothetical protein
1669	 52.55	0	2090878..2091486	+	202	117924987	-	Mmc1_1689	-	hypothetical protein
1670	 55.75	0	2091491..2092828	+	445	117924988	-	Mmc1_1690	-	hypothetical protein
1671	 56.38	0	2092856..2093137	+	93	117924989	-	Mmc1_1691	-	hypothetical protein
1672	 47.49	-1	2093792..2094469	-	225	117924990	-	Mmc1_1692	-	hypothetical protein
1673	 50.12	-1	2094738..2095148	-	136	117924991	-	Mmc1_1693	-	hypothetical protein
1674	 52.15	0	2095417..2097345	+	642	117924992	-	Mmc1_1694	-	heat shock protein 90
1675	 59.11	+1	2097443..2097826	-	127	117924993	-	Mmc1_1695	-	hypothetical protein
1676	 47.37	-1	2098001..2098399	+	132	117924994	-	Mmc1_1696	-	hypothetical protein
1677	 55.63	0	2098537..2099895	+	452	117924995	-	Mmc1_1697	-	anion transporter
1678	 54.83	0	2099913..2100875	+	320	117924996	-	Mmc1_1698	-	UspA domain-containing protein
1679	 56.25	0	2100941..2103109	+	722	117924997	-	Mmc1_1699	-	23S rRNA m(2)G2445 methyltransferase
1680	 50.27	0	2103327..2104265	+	312	117924998	-	Mmc1_1700	-	exopolyphosphatase-related protein
1681	 53.57	0	2104347..2105354	-	335	117924999	-	Mmc1_1701	-	ferrochelatase
1682	 53.24	0	2105777..2106640	+	287	117925000	-	Mmc1_1702	-	MRP ATP/GTP-binding protein
1683	 55.27	0	2106713..2108116	+	467	117925001	-	Mmc1_1703	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
1684	 53.50	0	2108726..2109082	+	118	117925002	-	Mmc1_1704	-	DsrE family protein
1685	 49.25	-1	2109097..2109498	+	133	117925003	-	Mmc1_1705	-	DsrE family protein
1686	 48.64	-1	2109518..2109811	+	97	117925004	-	Mmc1_1706	-	DsrH family protein
1687	 53.04	0	2110000..2110344	+	114	117925005	-	Mmc1_1707	-	hypothetical protein
1688	 50.96	0	2110549..2111280	+	243	117925006	-	Mmc1_1708	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1689	 49.33	-1	2111295..2112488	+	397	117925007	-	Mmc1_1709	-	polysulphide reductase, NrfD
1690	 49.75	-1	2112728..2114890	+	720	117925008	-	Mmc1_1710	-	response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1691	 54.61	0	2115027..2116328	+	433	117925009	-	Mmc1_1711	-	peptidase U32
1692	 55.48	0	2116450..2118237	+	595	117925010	-	Mmc1_1712	-	TPR repeat-containing protein
1693	 60.07	+1	2118293..2118595	-	100	117925011	-	Mmc1_1713	-	hypothetical protein
1694	 54.44	0	2119557..2120153	+	198	117925012	-	Mmc1_1715	-	hypothetical protein
1695	 51.69	0	2120705..2121679	+	324	117925013	-	Mmc1_1716	-	hypothetical protein
1696	 55.06	0	2121694..2121960	+	88	117925014	-	Mmc1_1717	-	hypothetical protein
1697	 52.43	0	2122164..2122781	+	205	117925015	-	Mmc1_1718	-	hypothetical protein
1698	 57.69	0	2122778..2123479	+	233	117925016	-	Mmc1_1719	-	hypothetical protein
1699	 55.80	0	2123617..2125143	+	508	117925017	-	Mmc1_1720	-	hypothetical protein
1700	 56.31	0	2125140..2125583	+	147	117925018	-	Mmc1_1721	-	hypothetical protein
1701	 52.73	0	2125662..2126780	+	372	117925019	-	Mmc1_1722	-	hypothetical protein
1702	 56.33	0	2126796..2127095	+	99	117925020	-	Mmc1_1723	-	hypothetical protein
1703	 57.91	0	2127257..2128375	+	372	117925021	-	Mmc1_1724	-	hypothetical protein
1704	 53.48	0	2128386..2128658	+	90	117925022	-	Mmc1_1725	-	hypothetical protein
1705	 53.99	0	2129203..2130717	+	504	117925023	-	Mmc1_1726	-	putative PAS/PAC sensor protein
1706	 53.65	0	2130883..2132442	-	519	117925024	-	Mmc1_1727	-	sulfotransferase
1707	 52.48	0	2133115..2135067	+	650	117925025	-	Mmc1_1728	-	citrate transporter
1708	 50.32	0	2135467..2137620	-	717	117925026	-	Mmc1_1729	-	ferrous iron transport protein B
1709	 47.37	-1	2137676..2137903	-	75	117925027	-	Mmc1_1730	-	FeoA family protein
1710	 52.54	0	2138376..2139182	+	268	117925028	-	Mmc1_1731	-	ModE family transcriptional regulator
1711	 52.95	0	2139198..2139977	+	259	117925029	-	Mmc1_1732	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
1712	 48.46	-1	2140435..2141829	+	464	117925030	-	Mmc1_1733	-	diguanylate cyclase
1713	 53.09	0	2141839..2143584	-	581	117925031	-	Mmc1_1734	-	sulphate transporter
1714	 48.92	-1	2144069..2146288	-	739	117925032	-	Mmc1_1735	-	cyclic nucleotide-binding protein
1715	 42.33	-2	2146631..2146819	+	62	117925033	-	Mmc1_1736	-	hypothetical protein
1716	 57.39	0	2146856..2147911	+	351	117925034	-	Mmc1_1737	-	cobalamin synthesis protein, P47K
1717	 56.77	0	2148338..2150155	+	605	117925035	-	Mmc1_1738	-	DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit
1718	 52.08	0	2150263..2150646	+	127	117925036	-	Mmc1_1739	-	hypothetical protein
1719	 57.05	0	2150656..2151258	+	200	117925037	-	Mmc1_1740	-	DNA replication and repair protein RecR
1720	 53.88	0	2151478..2153511	+	677	117925038	-	Mmc1_1741	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
1721	 52.99	0	2153572..2155209	+	545	117925039	-	Mmc1_1742	-	thiamine pyrophosphate binding domain-containing protein
1722	 51.77	0	2155386..2156177	+	263	117925040	-	Mmc1_1743	-	hypothetical protein
1723	 51.22	0	2156247..2156492	-	81	117925041	-	Mmc1_1744	-	hypothetical protein
1724	 56.80	0	2156554..2157303	+	249	117925042	-	Mmc1_1745	-	ferredoxin
1725	 57.46	0	2157310..2158971	+	553	117925043	-	Mmc1_1746	-	L-aspartate oxidase
1726	 53.04	0	2159150..2160316	+	388	117925044	-	Mmc1_1747	-	succinyl-CoA synthetase (ADP-forming) beta subunit
1727	 56.24	0	2160319..2161191	+	290	117925045	-	Mmc1_1748	-	succinyl-CoA synthetase (ADP-forming) alpha subunit
1728	 52.73	0	2161258..2162979	+	573	117925046	-	Mmc1_1749	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
1729	 53.36	0	2162976..2163854	+	292	117925047	-	Mmc1_1750	-	pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit
1730	 52.11	0	2163872..2164510	+	212	117925048	-	Mmc1_1751	-	pentapeptide repeat-containing protein
1731	 48.33	-1	2164519..2164818	+	99	117925049	-	Mmc1_1752	-	hypothetical protein
1732	 53.74	0	2164858..2165499	+	213	117925050	-	Mmc1_1753	-	adenylate kinase
1733	 52.79	0	2165761..2167806	+	681	117925051	hppA	Mmc1_1754	-	membrane-bound proton-translocating pyrophosphatase
1734	 52.84	0	2168991..2170256	+	421	117925052	-	Mmc1_1755	-	aminotransferase
1735	 54.55	0	2170357..2171676	+	439	117925053	-	Mmc1_1756	-	homoserine dehydrogenase
1736	 59.25	+1	2171931..2173076	+	381	117925054	-	Mmc1_1757	-	hypothetical protein
1737	 58.01	0	2173076..2174854	+	592	117925055	-	Mmc1_1758	-	exonuclease RecJ
1738	 53.98	0	2175069..2176967	+	632	117925056	-	Mmc1_1759	-	transposase, IS4 family protein
1739	 53.07	0	2177072..2179381	-	769	117925057	-	Mmc1_1760	-	ATP-dependent Clp protease ATP-binding subunit ClpA
1740	 52.05	0	2179525..2179866	-	113	117925058	-	Mmc1_1761	-	ATP-dependent Clp protease adaptor protein ClpS
1741	 54.53	0	2180071..2180523	-	150	117925059	-	Mmc1_1762	-	hypothetical protein
1742	 59.77	+1	2180622..2182304	-	560	117925060	-	Mmc1_1763	-	DNA repair protein RecN
1743	 56.91	0	2182308..2183219	-	303	117925061	-	Mmc1_1764	-	NAD(+) kinase
1744	 54.77	0	2183228..2184118	-	296	117925062	-	Mmc1_1765	-	hypothetical protein
1745	 49.14	-1	2184278..2185087	+	269	117925063	-	Mmc1_1766	-	GTP cyclohydrolase
1746	 55.17	0	2185093..2186823	+	576	117925064	-	Mmc1_1767	-	prolyl-tRNA synthetase
1747	 53.12	0	2186972..2187451	+	159	117925065	-	Mmc1_1768	-	inhibitor of MCP methylation-like protein
1748	 57.19	0	2187468..2188121	+	217	117925066	-	Mmc1_1769	-	inhibitor of MCP methylation-like protein
1749	 55.56	0	2188244..2189863	-	539	117925067	-	Mmc1_1770	-	L-aspartate oxidase
1750	 51.68	0	2190208..2190801	+	197	117925068	-	Mmc1_1771	-	RNA polymerase sigma factor RpoE
1751	 51.25	0	2190903..2191382	+	159	117925069	-	Mmc1_1772	-	positive regulator of sigma(E), RseC/MucC
1752	 53.40	0	2191616..2193085	+	489	117925070	-	Mmc1_1773	-	protease Do
1753	 52.33	0	2193231..2193509	-	92	117925071	-	Mmc1_1774	-	hypothetical protein
1754	 52.45	0	2193807..2194010	+	67	117925072	-	Mmc1_1775	-	SSU ribosomal protein S21P
1755	 56.14	0	2194201..2197155	-	984	117925073	-	Mmc1_1776	-	ribonuclease E
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.