IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1608	 60.84	+1	2014799..2015296	-	165	117924926	-	Mmc1_1628	-	hypothetical protein
1609	 54.85	0	2015378..2016037	-	219	117924927	-	Mmc1_1629	-	DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
1610	 59.24	+1	2016131..2018164	+	677	117924928	-	Mmc1_1630	-	molybdopterin oxidoreductase
1611	 59.73	+1	2018258..2019352	+	364	117924929	-	Mmc1_1631	-	Beta-N-acetylhexosaminidase
1612	 50.25	0	2019397..2019804	+	135	117924930	-	Mmc1_1632	-	hypothetical protein
1613	 44.40	-2	2021071..2022543	+	490	117924931	-	Mmc1_1633	-	radical SAM domain-containing protein
1614	 45.18	-2	2022859..2026209	+	1116	117924932	-	Mmc1_1634	-	ankyrin repeat-containing protein
1615	 54.59	0	2026800..2028671	+	623	117924933	-	Mmc1_1635	-	glycosyl transferase, group 1
1616	 56.17	0	2028673..2031579	+	968	117924934	-	Mmc1_1636	-	TPR repeat-containing protein
1617	 53.60	0	2031995..2032675	+	226	117924935	-	Mmc1_1637	-	hypothetical protein
1618	 55.02	0	2033323..2035203	+	626	117924936	-	Mmc1_1638	-	sulfate transporter
1619	 49.40	-1	2035327..2035662	+	111	117924937	-	Mmc1_1639	-	peptidase S16, lon-like protein
1620	 47.39	-1	2035862..2037277	-	471	117924938	-	Mmc1_1640	-	metal dependent phosphohydrolase
1621	 54.77	0	2037469..2038788	-	439	117924939	-	Mmc1_1641	-	DEAD/DEAH box helicase domain-containing protein
1622	 49.43	-1	2039130..2039570	-	146	117924940	-	Mmc1_1642	-	cache type 2 domain-containing protein
1623	 58.33	0	2040259..2040438	+	59	117924941	-	Mmc1_1643	-	50S ribosomal protein L32P
1624	 53.75	0	2040631..2041683	+	350	117924942	-	Mmc1_1644	-	phosphate:acyl-[acyl carrier protein] acyltransferase
1625	 56.20	0	2041791..2042831	+	346	117924943	-	Mmc1_1645	-	3-oxoacyl-[acyl-carrier-protein] synthase III
1626	 52.11	0	2042900..2044486	+	528	117924944	-	Mmc1_1646	-	lytic transglycosylase, catalytic
1627	 53.76	0	2044541..2045896	-	451	117924945	-	Mmc1_1647	-	hypothetical protein
1628	 50.22	0	2046120..2046794	+	224	117924946	-	Mmc1_1648	-	hemerythrin HHE cation binding domain-containing protein
1629	 49.05	-1	2047344..2048705	+	453	117924947	-	Mmc1_1649	-	diguanylate cyclase
1630	 55.07	0	2048787..2049605	-	272	117924948	-	Mmc1_1650	-	heat shock protein DnaJ domain-containing protein
1631	 54.82	0	2049751..2053347	-	1198	117924949	-	Mmc1_1651	-	transcription-repair coupling factor
1632	 50.87	0	2053510..2054199	-	229	117924950	-	Mmc1_1652	-	hypothetical protein
1633	 51.16	0	2054217..2054906	-	229	117924951	-	Mmc1_1653	-	hypothetical protein
1634	 54.06	0	2055203..2057716	+	837	117924952	-	Mmc1_1654	-	PAS/PAC sensor hybrid histidine kinase
1635	 55.90	0	2057858..2058526	+	222	117924953	-	Mmc1_1655	-	methyltransferase type 12
1636	 52.75	0	2058523..2059974	-	483	117924954	-	Mmc1_1656	-	diguanylate cyclase
1637	 56.21	0	2059999..2060763	-	254	117924955	-	Mmc1_1657	-	hydroxyacylglutathione hydrolase
1638	 55.90	0	2060898..2061668	+	256	117924956	-	Mmc1_1658	-	methyltransferase type 11
1639	 54.66	0	2061661..2062551	+	296	117924957	-	Mmc1_1659	-	tyrosine recombinase XerD subunit
1640	 56.97	0	2062552..2063655	+	367	117924958	-	Mmc1_1660	-	short-chain dehydrogenase/reductase SDR
1641	 54.44	0	2063786..2064619	+	277	117924959	-	Mmc1_1661	-	sodium/calcium exchange protein-like protein
1642	 52.84	0	2064948..2065229	-	93	117924960	-	Mmc1_1662	-	hypothetical protein
1643	 62.87	+2	2065279..2065752	-	157	117924961	-	Mmc1_1663	-	protein tyrosine phosphatase, receptor type, F-like protein
1644	 52.15	0	2065968..2066270	-	100	117924962	-	Mmc1_1664	-	hypothetical protein
1645	 53.42	0	2066491..2067894	+	467	117924963	-	Mmc1_1665	-	sigma-54 dependent trancsriptional regulator
1646	 55.72	0	2067891..2068877	-	328	117924964	-	Mmc1_1666	-	beta-lactamase domain-containing protein
1647	 58.83	+1	2069513..2070061	+	182	117924965	-	Mmc1_1667	-	hypothetical protein
1648	 55.01	0	2070110..2070598	-	162	117924966	-	Mmc1_1668	-	hypothetical protein
1649	 51.93	0	2071031..2071702	+	223	117924967	-	Mmc1_1669	-	outer membrane lipoprotein carrier protein LolA
1650	 48.35	-1	2071807..2072292	+	161	117924968	-	Mmc1_1670	-	nucleotide-binding protein
1651	 57.45	0	2072353..2073816	+	487	117924969	-	Mmc1_1671	-	MiaB-like tRNA modifying enzyme YliG
1652	 59.30	+1	2073819..2075162	+	447	117924970	-	Mmc1_1672	-	recombination factor protein RarA
1653	 55.65	0	2075153..2075524	+	123	117924971	-	Mmc1_1673	-	camphor resistance protein CrcB
1654	 57.91	0	2075698..2076690	+	330	117924972	-	Mmc1_1674	-	phage integrase family protein
1655	 54.94	0	2076789..2078255	-	488	117924973	-	Mmc1_1675	-	hypothetical protein
1656	 52.98	0	2078528..2079199	+	223	117924974	-	Mmc1_1676	-	hypothetical protein
1657	 48.86	-1	2079260..2079523	-	87	117924975	-	Mmc1_1677	-	hypothetical protein
1658	 52.75	0	2079752..2081353	+	533	117924976	-	Mmc1_1678	-	peptide chain release factor 3
1659	 49.92	-1	2081806..2082402	+	198	117924977	-	Mmc1_1679	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1660	 51.78	0	2082692..2083282	+	196	117924978	-	Mmc1_1680	-	stress protein
1661	 56.02	0	2083312..2084166	+	284	117924979	-	Mmc1_1681	-	6-phosphogluconate dehydrogenase, NAD-binding
1662	 51.40	0	2084233..2084946	+	237	117924980	-	Mmc1_1682	-	hypothetical protein
1663	 50.56	0	2085246..2085953	-	235	117924981	-	Mmc1_1683	-	cob(II)yrinic acid a,c-diamide reductase
1664	 52.38	0	2086401..2087198	-	265	117924982	-	Mmc1_1684	-	hypothetical protein
1665	 50.79	0	2088082..2088774	+	230	117924983	-	Mmc1_1685	-	hypothetical protein
1666	 50.11	-1	2088957..2089391	+	144	117924984	-	Mmc1_1686	-	hypothetical protein
1667	 50.85	0	2089780..2090133	+	117	117924985	-	Mmc1_1687	-	peptidase M15A
1668	 51.75	0	2090526..2090867	+	113	117924986	-	Mmc1_1688	-	hypothetical protein
1669	 52.55	0	2090878..2091486	+	202	117924987	-	Mmc1_1689	-	hypothetical protein
1670	 55.75	0	2091491..2092828	+	445	117924988	-	Mmc1_1690	-	hypothetical protein
1671	 56.38	0	2092856..2093137	+	93	117924989	-	Mmc1_1691	-	hypothetical protein
1672	 47.49	-1	2093792..2094469	-	225	117924990	-	Mmc1_1692	-	hypothetical protein
1673	 50.12	-1	2094738..2095148	-	136	117924991	-	Mmc1_1693	-	hypothetical protein
1674	 52.15	0	2095417..2097345	+	642	117924992	-	Mmc1_1694	-	heat shock protein 90
1675	 59.11	+1	2097443..2097826	-	127	117924993	-	Mmc1_1695	-	hypothetical protein
1676	 47.37	-1	2098001..2098399	+	132	117924994	-	Mmc1_1696	-	hypothetical protein
1677	 55.63	0	2098537..2099895	+	452	117924995	-	Mmc1_1697	-	anion transporter
1678	 54.83	0	2099913..2100875	+	320	117924996	-	Mmc1_1698	-	UspA domain-containing protein
1679	 56.25	0	2100941..2103109	+	722	117924997	-	Mmc1_1699	-	23S rRNA m(2)G2445 methyltransferase
1680	 50.27	0	2103327..2104265	+	312	117924998	-	Mmc1_1700	-	exopolyphosphatase-related protein
1681	 53.57	0	2104347..2105354	-	335	117924999	-	Mmc1_1701	-	ferrochelatase
1682	 53.24	0	2105777..2106640	+	287	117925000	-	Mmc1_1702	-	MRP ATP/GTP-binding protein
1683	 55.27	0	2106713..2108116	+	467	117925001	-	Mmc1_1703	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
1684	 53.50	0	2108726..2109082	+	118	117925002	-	Mmc1_1704	-	DsrE family protein
1685	 49.25	-1	2109097..2109498	+	133	117925003	-	Mmc1_1705	-	DsrE family protein
1686	 48.64	-1	2109518..2109811	+	97	117925004	-	Mmc1_1706	-	DsrH family protein
1687	 53.04	0	2110000..2110344	+	114	117925005	-	Mmc1_1707	-	hypothetical protein
1688	 50.96	0	2110549..2111280	+	243	117925006	-	Mmc1_1708	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1689	 49.33	-1	2111295..2112488	+	397	117925007	-	Mmc1_1709	-	polysulphide reductase, NrfD
1690	 49.75	-1	2112728..2114890	+	720	117925008	-	Mmc1_1710	-	response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1691	 54.61	0	2115027..2116328	+	433	117925009	-	Mmc1_1711	-	peptidase U32
1692	 55.48	0	2116450..2118237	+	595	117925010	-	Mmc1_1712	-	TPR repeat-containing protein
1693	 60.07	+1	2118293..2118595	-	100	117925011	-	Mmc1_1713	-	hypothetical protein
1694	 54.44	0	2119557..2120153	+	198	117925012	-	Mmc1_1715	-	hypothetical protein
1695	 51.69	0	2120705..2121679	+	324	117925013	-	Mmc1_1716	-	hypothetical protein
1696	 55.06	0	2121694..2121960	+	88	117925014	-	Mmc1_1717	-	hypothetical protein
1697	 52.43	0	2122164..2122781	+	205	117925015	-	Mmc1_1718	-	hypothetical protein
1698	 57.69	0	2122778..2123479	+	233	117925016	-	Mmc1_1719	-	hypothetical protein
1699	 55.80	0	2123617..2125143	+	508	117925017	-	Mmc1_1720	-	hypothetical protein
1700	 56.31	0	2125140..2125583	+	147	117925018	-	Mmc1_1721	-	hypothetical protein
1701	 52.73	0	2125662..2126780	+	372	117925019	-	Mmc1_1722	-	hypothetical protein
1702	 56.33	0	2126796..2127095	+	99	117925020	-	Mmc1_1723	-	hypothetical protein
1703	 57.91	0	2127257..2128375	+	372	117925021	-	Mmc1_1724	-	hypothetical protein
1704	 53.48	0	2128386..2128658	+	90	117925022	-	Mmc1_1725	-	hypothetical protein
1705	 53.99	0	2129203..2130717	+	504	117925023	-	Mmc1_1726	-	putative PAS/PAC sensor protein
1706	 53.65	0	2130883..2132442	-	519	117925024	-	Mmc1_1727	-	sulfotransferase
1707	 52.48	0	2133115..2135067	+	650	117925025	-	Mmc1_1728	-	citrate transporter
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.