IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1563	 54.55	0	1952090..1953541	-	483	117924881	-	Mmc1_1583	-	adenylate/guanylate cyclase
1564	 52.46	0	1953914..1954786	+	290	117924882	-	Mmc1_1584	-	extracellular solute-binding protein
1565	 52.61	0	1954948..1957941	+	997	117924883	-	Mmc1_1585	-	methyl-accepting chemotaxis sensory transducer
1566	 57.12	0	1958061..1958825	-	254	117924884	-	Mmc1_1586	-	6-phosphogluconolactonase
1567	 53.30	0	1959596..1960186	-	196	117924885	-	Mmc1_1587	-	NapC/NirT cytochrome c domain-containing protein
1568	 54.25	0	1960255..1960713	-	152	117924886	-	Mmc1_1588	-	periplasmic nitrate reductase subunit NapB
1569	 56.18	0	1960723..1961580	-	285	117924887	-	Mmc1_1589	-	periplasmic nitrate reductase subunit NapH
1570	 58.37	0	1961577..1962347	-	256	117924888	-	Mmc1_1590	-	periplasmic nitrate reductase subunit NapG
1571	 54.14	0	1962473..1964986	-	837	117924889	-	Mmc1_1591	-	nitrate reductase
1572	 52.33	0	1964983..1965240	-	85	117924890	-	Mmc1_1592	-	NapD family protein
1573	 60.46	+1	1965237..1965800	-	187	117924891	-	Mmc1_1593	-	periplasmic nitrate reductase maturation protein NapF
1574	 52.53	0	1966411..1967457	+	348	117924892	-	Mmc1_1594	-	TonB-dependent receptor, plug
1575	 54.18	0	1967612..1969021	+	469	117924893	-	Mmc1_1595	-	hypothetical protein
1576	 50.68	0	1969052..1970152	+	366	117924894	-	Mmc1_1596	-	TonB-dependent receptor
1577	 49.67	-1	1970171..1970776	+	201	117924895	-	Mmc1_1597	-	hypothetical protein
1578	 53.96	0	1970850..1973744	+	964	117924896	-	Mmc1_1598	-	multi-sensor hybrid histidine kinase
1579	 53.21	0	1974183..1976174	-	663	117924897	-	Mmc1_1599	-	secreted hydrolase-like protein
1580	 52.82	0	1976425..1976778	-	117	117924898	-	Mmc1_1600	-	hypothetical protein
1581	 55.32	0	1976883..1978133	-	416	117924899	-	Mmc1_1601	-	protein of unknown function DUF395, YeeE/YedE
1582	 54.80	0	1978525..1979097	+	190	117924900	-	Mmc1_1602	-	hypothetical protein
1583	 55.18	0	1979245..1981473	-	742	117924901	-	Mmc1_1603	-	isocitrate dehydrogenase, NADP-dependent
1584	 57.86	0	1982004..1985774	-	1256	117924902	-	Mmc1_1604	-	helicase-associated
1585	 59.00	+1	1985917..1987989	-	690	117924903	-	Mmc1_1605	-	short chain dehydrogenase
1586	 55.40	0	1988077..1988955	-	292	117924904	-	Mmc1_1606	-	aldolase
1587	 54.53	0	1989129..1989713	-	194	117924905	-	Mmc1_1607	-	hypothetical protein
1588	 55.02	0	1989713..1990330	-	205	117924906	-	Mmc1_1608	-	hypothetical protein
1589	 54.43	0	1990347..1991384	-	345	117924907	-	Mmc1_1609	-	twitching motility protein
1590	 55.84	0	1991598..1992770	+	390	117924908	-	Mmc1_1610	-	recA protein
1591	 55.45	0	1992908..1995172	+	754	117924909	-	Mmc1_1611	-	DNA topoisomerase IV subunit A
1592	 55.80	0	1995221..1995763	+	180	117924910	-	Mmc1_1612	-	tripartite ATP-independent periplasmic transporter DctQ
1593	 57.36	0	1995763..1997148	+	461	117924911	-	Mmc1_1613	-	TRAP dicarboxylate transporter, DctM subunit
1594	 48.24	-1	1997567..1998076	-	169	117924912	-	Mmc1_1614	-	hypothetical protein
1595	 57.69	0	1998381..2002814	-	1477	117924913	-	Mmc1_1615	-	DNA translocase FtsK
1596	 53.63	0	2002818..2004497	-	559	117924914	-	Mmc1_1616	-	beta-lactamase domain-containing protein
1597	 49.26	-1	2004494..2005309	-	271	117924915	-	Mmc1_1617	-	Sec-independent protein translocase TatC
1598	 60.57	+1	2005545..2006003	-	152	117924916	-	Mmc1_1618	-	twin-arginine translocation protein, TatB subunit
1599	 52.86	0	2006070..2006279	-	69	117924917	-	Mmc1_1619	-	twin arginine-targeting protein translocase
1600	 54.02	0	2006406..2007338	-	310	117924918	-	Mmc1_1620	-	TPR repeat-containing protein
1601	 57.61	0	2007535..2008362	+	275	117924919	-	Mmc1_1621	-	DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase
1602	 46.40	-1	2008359..2008802	-	147	117924920	-	Mmc1_1622	-	type IV pilus assembly PilZ
1603	 56.32	0	2009123..2010301	-	392	117924921	-	Mmc1_1623	-	hypothetical protein
1604	 58.57	+1	2010303..2011859	-	518	117924922	-	Mmc1_1624	-	metal dependent phosphohydrolase
1605	 55.84	0	2011959..2012420	-	153	117924923	-	Mmc1_1625	-	hypothetical protein
1606	 57.19	0	2012457..2013554	-	365	117924924	-	Mmc1_1626	-	quinolinate synthetase
1607	 58.51	+1	2013615..2014778	+	387	117924925	-	Mmc1_1627	-	hypothetical protein
1608	 60.84	+1	2014799..2015296	-	165	117924926	-	Mmc1_1628	-	hypothetical protein
1609	 54.85	0	2015378..2016037	-	219	117924927	-	Mmc1_1629	-	DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
1610	 59.24	+1	2016131..2018164	+	677	117924928	-	Mmc1_1630	-	molybdopterin oxidoreductase
1611	 59.73	+1	2018258..2019352	+	364	117924929	-	Mmc1_1631	-	Beta-N-acetylhexosaminidase
1612	 50.25	0	2019397..2019804	+	135	117924930	-	Mmc1_1632	-	hypothetical protein
1613	 44.40	-2	2021071..2022543	+	490	117924931	-	Mmc1_1633	-	radical SAM domain-containing protein
1614	 45.18	-2	2022859..2026209	+	1116	117924932	-	Mmc1_1634	-	ankyrin repeat-containing protein
1615	 54.59	0	2026800..2028671	+	623	117924933	-	Mmc1_1635	-	glycosyl transferase, group 1
1616	 56.17	0	2028673..2031579	+	968	117924934	-	Mmc1_1636	-	TPR repeat-containing protein
1617	 53.60	0	2031995..2032675	+	226	117924935	-	Mmc1_1637	-	hypothetical protein
1618	 55.02	0	2033323..2035203	+	626	117924936	-	Mmc1_1638	-	sulfate transporter
1619	 49.40	-1	2035327..2035662	+	111	117924937	-	Mmc1_1639	-	peptidase S16, lon-like protein
1620	 47.39	-1	2035862..2037277	-	471	117924938	-	Mmc1_1640	-	metal dependent phosphohydrolase
1621	 54.77	0	2037469..2038788	-	439	117924939	-	Mmc1_1641	-	DEAD/DEAH box helicase domain-containing protein
1622	 49.43	-1	2039130..2039570	-	146	117924940	-	Mmc1_1642	-	cache type 2 domain-containing protein
1623	 58.33	0	2040259..2040438	+	59	117924941	-	Mmc1_1643	-	50S ribosomal protein L32P
1624	 53.75	0	2040631..2041683	+	350	117924942	-	Mmc1_1644	-	phosphate:acyl-[acyl carrier protein] acyltransferase
1625	 56.20	0	2041791..2042831	+	346	117924943	-	Mmc1_1645	-	3-oxoacyl-[acyl-carrier-protein] synthase III
1626	 52.11	0	2042900..2044486	+	528	117924944	-	Mmc1_1646	-	lytic transglycosylase, catalytic
1627	 53.76	0	2044541..2045896	-	451	117924945	-	Mmc1_1647	-	hypothetical protein
1628	 50.22	0	2046120..2046794	+	224	117924946	-	Mmc1_1648	-	hemerythrin HHE cation binding domain-containing protein
1629	 49.05	-1	2047344..2048705	+	453	117924947	-	Mmc1_1649	-	diguanylate cyclase
1630	 55.07	0	2048787..2049605	-	272	117924948	-	Mmc1_1650	-	heat shock protein DnaJ domain-containing protein
1631	 54.82	0	2049751..2053347	-	1198	117924949	-	Mmc1_1651	-	transcription-repair coupling factor
1632	 50.87	0	2053510..2054199	-	229	117924950	-	Mmc1_1652	-	hypothetical protein
1633	 51.16	0	2054217..2054906	-	229	117924951	-	Mmc1_1653	-	hypothetical protein
1634	 54.06	0	2055203..2057716	+	837	117924952	-	Mmc1_1654	-	PAS/PAC sensor hybrid histidine kinase
1635	 55.90	0	2057858..2058526	+	222	117924953	-	Mmc1_1655	-	methyltransferase type 12
1636	 52.75	0	2058523..2059974	-	483	117924954	-	Mmc1_1656	-	diguanylate cyclase
1637	 56.21	0	2059999..2060763	-	254	117924955	-	Mmc1_1657	-	hydroxyacylglutathione hydrolase
1638	 55.90	0	2060898..2061668	+	256	117924956	-	Mmc1_1658	-	methyltransferase type 11
1639	 54.66	0	2061661..2062551	+	296	117924957	-	Mmc1_1659	-	tyrosine recombinase XerD subunit
1640	 56.97	0	2062552..2063655	+	367	117924958	-	Mmc1_1660	-	short-chain dehydrogenase/reductase SDR
1641	 54.44	0	2063786..2064619	+	277	117924959	-	Mmc1_1661	-	sodium/calcium exchange protein-like protein
1642	 52.84	0	2064948..2065229	-	93	117924960	-	Mmc1_1662	-	hypothetical protein
1643	 62.87	+2	2065279..2065752	-	157	117924961	-	Mmc1_1663	-	protein tyrosine phosphatase, receptor type, F-like protein
1644	 52.15	0	2065968..2066270	-	100	117924962	-	Mmc1_1664	-	hypothetical protein
1645	 53.42	0	2066491..2067894	+	467	117924963	-	Mmc1_1665	-	sigma-54 dependent trancsriptional regulator
1646	 55.72	0	2067891..2068877	-	328	117924964	-	Mmc1_1666	-	beta-lactamase domain-containing protein
1647	 58.83	+1	2069513..2070061	+	182	117924965	-	Mmc1_1667	-	hypothetical protein
1648	 55.01	0	2070110..2070598	-	162	117924966	-	Mmc1_1668	-	hypothetical protein
1649	 51.93	0	2071031..2071702	+	223	117924967	-	Mmc1_1669	-	outer membrane lipoprotein carrier protein LolA
1650	 48.35	-1	2071807..2072292	+	161	117924968	-	Mmc1_1670	-	nucleotide-binding protein
1651	 57.45	0	2072353..2073816	+	487	117924969	-	Mmc1_1671	-	MiaB-like tRNA modifying enzyme YliG
1652	 59.30	+1	2073819..2075162	+	447	117924970	-	Mmc1_1672	-	recombination factor protein RarA
1653	 55.65	0	2075153..2075524	+	123	117924971	-	Mmc1_1673	-	camphor resistance protein CrcB
1654	 57.91	0	2075698..2076690	+	330	117924972	-	Mmc1_1674	-	phage integrase family protein
1655	 54.94	0	2076789..2078255	-	488	117924973	-	Mmc1_1675	-	hypothetical protein
1656	 52.98	0	2078528..2079199	+	223	117924974	-	Mmc1_1676	-	hypothetical protein
1657	 48.86	-1	2079260..2079523	-	87	117924975	-	Mmc1_1677	-	hypothetical protein
1658	 52.75	0	2079752..2081353	+	533	117924976	-	Mmc1_1678	-	peptide chain release factor 3
1659	 49.92	-1	2081806..2082402	+	198	117924977	-	Mmc1_1679	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1660	 51.78	0	2082692..2083282	+	196	117924978	-	Mmc1_1680	-	stress protein
1661	 56.02	0	2083312..2084166	+	284	117924979	-	Mmc1_1681	-	6-phosphogluconate dehydrogenase, NAD-binding
1662	 51.40	0	2084233..2084946	+	237	117924980	-	Mmc1_1682	-	hypothetical protein
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.