IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1354	 53.88	0	1665966..1666880	+	304	117924672	-	Mmc1_1372	-	hypothetical protein
1355	 54.05	0	1666899..1667564	+	221	117924673	-	Mmc1_1373	-	hypothetical protein
1356	 39.92	-2	1667686..1667928	+	80	117924674	-	Mmc1_1374	-	hypothetical protein
1357	 40.34	-2	1668156..1668797	+	213	117924675	-	Mmc1_1375	-	hypothetical protein
1358	 54.47	0	1668990..1670498	-	502	117924676	-	Mmc1_1376	-	transposase IS66
1359	 48.64	-1	1670495..1670788	-	97	117924677	-	Mmc1_1377	-	hypothetical protein
1360	 53.16	0	1670785..1671258	-	157	117924678	-	Mmc1_1378	-	putative transposase
1361	 58.21	0	1671740..1672129	-	129	117924679	-	Mmc1_1379	-	hypothetical protein
1362	 37.07	-2	1672812..1673774	+	320	117924680	-	Mmc1_1380	-	hypothetical protein
1363	 61.80	+1	1673903..1674169	-	88	117924681	-	Mmc1_1381	-	micrococcal nuclease-like protein
1364	 54.79	0	1674219..1675910	-	563	117924682	-	Mmc1_1382	-	transposase, IS4 family protein
1365	 42.46	-2	1676187..1676876	-	229	117924683	-	Mmc1_1383	-	hypothetical protein
1366	 52.46	0	1677245..1678708	+	487	117924684	-	Mmc1_1384	-	hypothetical protein
1367	 56.63	0	1679793..1684106	+	1437	117924685	-	Mmc1_1385	-	TPR repeat-containing protein
1368	 55.99	0	1684327..1686537	-	736	117924686	-	Mmc1_1386	-	peptidase M28
1369	 52.86	0	1686859..1687821	+	320	117924687	-	Mmc1_1387	-	cyclic nucleotide-binding protein
1370	 56.52	0	1687889..1689760	-	623	117924688	-	Mmc1_1388	-	ABC transporter related
1371	 57.60	0	1689828..1690169	+	113	117924689	-	Mmc1_1389	-	hypothetical protein
1372	 57.94	0	1690186..1690953	+	255	117924690	-	Mmc1_1390	-	pseudouridine synthase
1373	 50.83	0	1691142..1691747	+	201	117924691	-	Mmc1_1391	-	hypothetical protein
1374	 52.99	0	1691829..1694000	-	723	117924692	-	Mmc1_1392	-	glycogen branching enzyme
1375	 58.33	0	1694297..1694800	+	167	117924693	-	Mmc1_1393	-	CMP/dCMP deaminase, zinc-binding
1376	 54.13	0	1694805..1695506	-	233	117924694	-	Mmc1_1394	-	HAD family hydrolase
1377	 50.40	0	1695689..1696942	+	417	117924695	-	Mmc1_1395	-	type IV pilus assembly PilZ
1378	 54.80	0	1697121..1698392	-	423	117924696	-	Mmc1_1396	-	glutamate N-acetyltransferase / N-acetylglutamate synthase
1379	 56.62	0	1698426..1698863	+	145	117924697	-	Mmc1_1397	-	hypothetical protein
1380	 57.36	0	1698874..1699335	+	153	117924698	-	Mmc1_1398	-	NUDIX hydrolase
1381	 52.06	0	1699376..1700806	-	476	117924699	-	Mmc1_1399	-	response regulator receiver modulated diguanylate cyclase
1382	 60.04	+1	1701008..1701913	-	301	117924700	-	Mmc1_1400	-	methyltransferase type 11
1383	 58.57	+1	1701987..1702715	+	242	117924701	-	Mmc1_1401	-	phosphoribosyltransferase
1384	 50.78	0	1702937..1703194	+	85	117924702	-	Mmc1_1402	-	glutaredoxin 3
1385	 57.37	0	1703214..1704041	+	275	117924703	-	Mmc1_1403	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1386	 52.60	0	1704054..1705226	+	390	117924704	-	Mmc1_1404	-	diguanylate cyclase
1387	 53.99	0	1705489..1706553	+	354	117924705	-	Mmc1_1405	-	dTDP-glucose 4,6-dehydratase
1388	 53.84	0	1706550..1707422	+	290	117924706	-	Mmc1_1406	-	glucose-1-phosphate thymidylyltransferase
1389	 58.91	+1	1707567..1708340	+	257	117924707	-	Mmc1_1407	-	hypothetical protein
1390	 54.57	0	1708346..1708717	-	123	117924708	-	Mmc1_1408	-	hypothetical protein
1391	 57.22	0	1708949..1710790	+	613	117924709	-	Mmc1_1409	-	citrate transporter
1392	 55.51	0	1710892..1712244	-	450	117924710	-	Mmc1_1410	-	3-deoxy-D-arabinoheptulosonate-7-phosphate synthase
1393	 53.19	0	1712643..1715417	-	924	117924711	-	Mmc1_1411	-	UTP-GlnB uridylyltransferase, GlnD
1394	 56.71	0	1715650..1716684	+	344	117924712	-	Mmc1_1412	-	rod shape-determining protein MreB
1395	 59.31	+1	1716701..1717624	+	307	117924713	-	Mmc1_1413	-	rod shape-determining protein MreC
1396	 61.05	+1	1717621..1718136	+	171	117924714	-	Mmc1_1414	-	rod shape-determining protein MreD
1397	 56.99	0	1718123..1719952	+	609	117924715	-	Mmc1_1415	-	peptidoglycan glycosyltransferase
1398	 56.54	0	1719949..1721103	+	384	117924716	-	Mmc1_1416	-	rod shape-determining protein RodA
1399	 58.49	+1	1721137..1722102	+	321	117924717	-	Mmc1_1417	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1400	 58.60	+1	1722099..1723238	+	379	117924718	-	Mmc1_1418	-	methyltransferase type 11
1401	 62.46	+1	1723241..1723834	+	197	117924719	-	Mmc1_1419	-	hypothetical protein
1402	 56.09	0	1723979..1725424	+	481	117924720	-	Mmc1_1420	-	protein of unknown function DUF463, YcjX family protein
1403	 58.37	0	1725424..1726641	+	405	117924721	-	Mmc1_1421	-	membrane protein-like protein
1404	 53.68	0	1726903..1727988	+	361	117924722	-	Mmc1_1422	-	phosphoserine aminotransferase
1405	 57.39	0	1728112..1729695	+	527	117924723	-	Mmc1_1423	-	D-3-phosphoglycerate dehydrogenase
1406	 59.39	+1	1729819..1730739	-	306	117924724	-	Mmc1_1424	-	adenosylcobinamide-phosphate synthase
1407	 53.82	0	1730816..1731064	+	82	117924725	-	Mmc1_1425	-	hypothetical protein
1408	 57.13	0	1731092..1732738	+	548	117924726	-	Mmc1_1426	-	hypothetical protein
1409	 54.50	0	1732799..1733554	+	251	117924727	-	Mmc1_1427	-	methyltransferase type 12
1410	 48.16	-1	1733558..1734292	+	244	117924728	-	Mmc1_1428	-	glycosyl transferase family protein
1411	 53.33	0	1734408..1735517	+	369	117924729	-	Mmc1_1429	-	GDP-mannose 4,6-dehydratase
1412	 59.03	+1	1735595..1738423	-	942	117924730	-	Mmc1_1430	-	Sel1 domain-containing protein
1413	 56.93	0	1738420..1740873	-	817	117924731	-	Mmc1_1431	-	Sel1 domain-containing protein
1414	 55.67	0	1741220..1742929	+	569	117924732	-	Mmc1_1432	-	pyruvate kinase
1415	 56.29	0	1743050..1743637	+	195	117924733	-	Mmc1_1433	-	putative methyltransferase
1416	 54.34	0	1743661..1744155	+	164	117924734	-	Mmc1_1434	-	phosphopantetheine adenylyltransferase
1417	 56.24	0	1744196..1745509	+	437	117924735	-	Mmc1_1435	-	RNA modification protein
1418	 55.96	0	1745575..1746555	+	326	117924736	-	Mmc1_1436	-	PhoH family protein
1419	 57.61	0	1746736..1749309	+	857	117924737	-	Mmc1_1437	-	metal dependent phosphohydrolase
1420	 59.01	+1	1749323..1749766	+	147	117924738	-	Mmc1_1438	-	hypothetical protein
1421	 61.52	+1	1749766..1751340	+	524	117924739	-	Mmc1_1439	-	apolipoprotein N-acyltransferase
1422	 54.35	0	1751351..1752316	+	321	117924740	glyQ	Mmc1_1440	-	glycyl-tRNA synthetase subunit alpha
1423	 60.01	+1	1752319..1754421	+	700	117924741	-	Mmc1_1441	-	glycine--tRNA ligase
1424	 56.71	0	1754636..1756453	+	605	117924742	-	Mmc1_1442	-	ATP-dependent DNA helicase RecQ
1425	 56.38	0	1758364..1758810	-	148	117924743	-	Mmc1_1445	-	hypothetical protein
1426	 51.53	0	1758814..1759731	-	305	117924744	-	Mmc1_1446	-	SPFH domain-containing protein/band 7 family protein
1427	 60.51	+1	1759796..1760347	-	183	117924745	-	Mmc1_1447	-	hexapaptide repeat-containing transferase
1428	 58.56	+1	1760359..1761345	-	328	117924746	-	Mmc1_1448	-	sporulation domain-containing protein
1429	 55.96	0	1761348..1763954	-	868	117924747	-	Mmc1_1449	-	DNA mismatch repair protein MutS
1430	 51.89	0	1764219..1764827	-	202	117924748	-	Mmc1_1450	-	hypothetical protein
1431	 55.51	0	1765149..1768007	-	952	117924749	-	Mmc1_1451	-	hypothetical protein
1432	 52.94	0	1768280..1768534	-	84	117924750	-	Mmc1_1452	-	hypothetical protein
1433	 58.78	+1	1768829..1770223	+	464	117924751	-	Mmc1_1453	-	dihydrolipoamide dehydrogenase
1434	 48.82	-1	1770405..1770998	+	197	117924752	-	Mmc1_1454	-	methyltransferase type 11
1435	 48.94	-1	1771237..1772088	+	283	117924753	-	Mmc1_1455	-	response regulator receiver protein
1436	 53.72	0	1772290..1777161	-	1623	117924754	-	Mmc1_1456	-	glutamate dehydrogenase (NAD)
1437	 43.81	-2	1777391..1777600	-	69	117924755	-	Mmc1_1457	-	hypothetical protein
1438	 53.11	0	1778420..1778869	+	149	117924756	-	Mmc1_1458	-	hypothetical protein
1439	 53.14	0	1778989..1779195	-	68	117924757	-	Mmc1_1459	-	hypothetical protein
1440	 57.36	0	1779205..1781526	-	773	117924758	-	Mmc1_1460	-	RNA-binding S1 domain-containing protein
1441	 57.07	0	1781599..1782150	-	183	117924759	-	Mmc1_1461	-	hypothetical protein
1442	 58.16	0	1782147..1783286	-	379	117924760	-	Mmc1_1462	-	hypothetical protein
1443	 53.69	0	1783365..1784951	-	528	117924761	-	Mmc1_1463	-	radical SAM domain-containing protein
1444	 59.96	+1	1785107..1786717	-	536	117924762	-	Mmc1_1464	-	ABC transporter related
1445	 55.91	0	1786723..1787754	-	343	117924763	-	Mmc1_1465	-	binding-protein-dependent transport systems inner membrane component
1446	 57.51	0	1788353..1789138	+	261	117924764	-	Mmc1_1466	-	response regulator receiver protein
1447	 55.02	0	1789135..1790946	-	603	117924765	-	Mmc1_1467	-	ABC transporter related
1448	 58.17	0	1790943..1792826	-	627	117924766	-	Mmc1_1468	-	ABC transporter related
1449	 55.82	0	1793002..1793997	+	331	117924767	-	Mmc1_1469	-	peptidoglycan N-acetylmuramoylhydrolase
1450	 55.83	0	1794039..1794887	+	282	117924768	-	Mmc1_1470	-	rare lipoprotein A
1451	 53.49	0	1794930..1796090	+	386	117924769	-	Mmc1_1471	-	penicillin-binding protein 6
1452	 49.13	-1	1796208..1796669	+	153	117924770	-	Mmc1_1472	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1453	 60.27	+1	1796762..1798825	+	687	117924771	-	Mmc1_1473	-	hypothetical protein
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.