IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1216	 53.43	0	1534699..1535340	+	213	117924534	-	Mmc1_1234	-	hypothetical protein
1217	 55.56	0	1535352..1537034	+	560	117924535	-	Mmc1_1235	-	type III restriction enzyme, res subunit
1218	 56.34	0	1537034..1537459	+	141	117924536	-	Mmc1_1236	-	hypothetical protein
1219	 52.52	0	1537470..1538183	+	237	117924537	-	Mmc1_1237	-	hypothetical protein
1220	 57.01	0	1538180..1538956	+	258	117924538	-	Mmc1_1238	-	hypothetical protein
1221	 55.40	0	1538953..1541091	+	712	117924539	-	Mmc1_1239	-	TOPRIM domain-containing protein
1222	 60.48	+1	1541444..1541944	+	166	117924540	-	Mmc1_1240	-	hypothetical protein
1223	 60.27	+1	1541941..1542159	+	72	117924541	-	Mmc1_1241	-	hypothetical protein
1224	 55.88	0	1542152..1542559	+	135	117924542	-	Mmc1_1242	-	hypothetical protein
1225	 57.51	0	1542805..1543197	+	130	117924543	-	Mmc1_1243	-	peptidase M15A
1226	 50.72	0	1543200..1543475	-	91	117924544	-	Mmc1_1244	-	histone family protein DNA-binding protein
1227	 58.20	0	1543578..1543766	+	62	117924545	-	Mmc1_1245	-	hypothetical protein
1228	 60.61	+1	1543763..1544059	+	98	117924546	-	Mmc1_1246	-	hypothetical protein
1229	 57.33	0	1544056..1544655	+	199	117924547	-	Mmc1_1247	-	hypothetical protein
1230	 42.87	-2	1544658..1545506	-	282	117924548	-	Mmc1_1248	-	hypothetical protein
1231	 56.63	0	1545860..1547194	+	444	117924549	-	Mmc1_1249	-	nuclease
1232	 43.98	-2	1547248..1547463	+	71	117924550	-	Mmc1_1250	-	cold-shock DNA-binding protein family protein
1233	 48.19	-1	1547493..1547768	+	91	117924551	-	Mmc1_1251	-	histone family protein DNA-binding protein
1234	 54.28	0	1547823..1548500	-	225	117924552	-	Mmc1_1252	-	hypothetical protein
1235	 54.04	0	1548527..1548724	-	65	117924553	-	Mmc1_1253	-	hypothetical protein
1236	 59.24	+1	1548821..1549345	+	174	117924554	-	Mmc1_1254	-	hypothetical protein
1237	 46.28	-1	1549348..1549656	-	102	117924555	-	Mmc1_1255	-	CcdB-like toxin protein
1238	 46.75	-1	1549656..1549901	-	81	117924556	-	Mmc1_1256	-	post-segregation antitoxin CcdA
1239	 55.52	0	1550003..1551859	+	618	117924557	-	Mmc1_1257	-	phage terminase GpA
1240	 51.42	0	1551860..1552141	-	93	117924558	-	Mmc1_1258	-	hypothetical protein
1241	 50.46	0	1552177..1552392	+	71	117924559	-	Mmc1_1259	-	hypothetical protein
1242	 58.99	+1	1552392..1553876	+	494	117924560	-	Mmc1_1260	-	lambda family phage portal protein
1243	 58.31	0	1553935..1555191	+	418	117924561	-	Mmc1_1261	-	serine peptidase
1244	 60.66	+1	1555206..1555871	+	221	117924562	-	Mmc1_1262	-	putative phage protein GP19
1245	 57.30	0	1555874..1556887	+	337	117924563	-	Mmc1_1263	-	hypothetical protein
1246	 57.23	0	1556890..1557207	+	105	117924564	-	Mmc1_1264	-	hypothetical protein
1247	 55.43	0	1557210..1557467	+	85	117924565	-	Mmc1_1265	-	hypothetical protein
1248	 56.97	0	1557479..1558396	+	305	117924566	-	Mmc1_1266	-	hypothetical protein
1249	 56.45	0	1558399..1558770	+	123	117924567	-	Mmc1_1267	-	hypothetical protein
1250	 52.55	0	1558772..1559182	+	136	117924568	-	Mmc1_1268	-	hypothetical protein
1251	 54.79	0	1559188..1559928	+	246	117924569	-	Mmc1_1269	-	hypothetical protein
1252	 55.01	0	1559934..1560302	+	122	117924570	-	Mmc1_1270	-	hypothetical protein
1253	 45.41	-2	1560398..1560952	-	184	117924571	-	Mmc1_1271	-	hypothetical protein
1254	 59.97	+1	1561033..1564584	+	1183	117924572	-	Mmc1_1272	-	TP901 family phage tail tape measure protein
1255	 60.11	+1	1564594..1564959	+	121	117924573	-	Mmc1_1273	-	hypothetical protein
1256	 56.52	0	1564965..1565999	+	344	117924574	-	Mmc1_1274	-	hypothetical protein
1257	 58.56	+1	1565999..1566973	+	324	117924575	-	Mmc1_1275	-	hypothetical protein
1258	 55.17	0	1566948..1567469	+	173	117924576	-	Mmc1_1276	-	hypothetical protein
1259	 56.85	0	1567481..1567867	+	128	117924577	-	Mmc1_1277	-	hypothetical protein
1260	 59.81	+1	1567871..1569007	+	378	117924578	-	Mmc1_1278	-	hypothetical protein
1261	 58.97	+1	1569004..1570380	+	458	117924579	-	Mmc1_1279	-	hypothetical protein
1262	 40.95	-2	1570600..1571400	+	266	117924580	-	Mmc1_1280	-	hypothetical protein
1263	 39.45	-2	1571392..1572258	-	288	117924581	-	Mmc1_1281	-	DNA adenine methylase
1264	 38.36	-2	1572547..1573362	+	271	117924582	-	Mmc1_1282	-	DNA methylase N-4/N-6 domain-containing protein
1265	 55.09	0	1573400..1576750	-	1116	117924583	-	Mmc1_1283	-	hypothetical protein
1266	 54.08	0	1576747..1577652	-	301	117924584	-	Mmc1_1284	-	hypothetical protein
1267	 50.97	0	1577777..1578343	+	188	117924585	-	Mmc1_1285	-	hypothetical protein
1268	 52.63	0	1578806..1580707	+	633	117924586	-	Mmc1_1286	-	hypothetical protein
1269	 52.42	0	1580710..1581846	+	378	117924587	-	Mmc1_1287	-	histidine kinase
1270	 50.54	0	1581840..1582757	+	305	117924588	-	Mmc1_1288	-	response regulator receiver protein
1271	 45.04	-2	1582761..1583324	+	187	117924589	-	Mmc1_1289	-	sigma-70 region 4 domain-containing protein
1272	 56.34	0	1583598..1584827	+	409	117924590	-	Mmc1_1290	-	sigma-54 factor interaction domain-containing protein
1273	 50.46	0	1584995..1585981	+	328	117924591	-	Mmc1_1291	-	ATPase central domain-containing protein
1274	 52.77	0	1586002..1588527	+	841	117924592	-	Mmc1_1292	-	hypothetical protein
1275	 48.15	-1	1588627..1588842	-	71	117924593	-	Mmc1_1293	-	hypothetical protein
1276	 55.65	0	1588916..1589251	-	111	117924594	-	Mmc1_1294	-	hypothetical protein
1277	 56.55	0	1589296..1590363	-	355	117924595	-	Mmc1_1295	-	hypothetical protein
1278	 57.58	0	1590941..1591435	+	164	117924596	-	Mmc1_1296	-	hypothetical protein
1279	 59.03	+1	1591432..1592334	+	300	117924597	-	Mmc1_1297	-	hypothetical protein
1280	 55.81	0	1592340..1592984	+	214	117924598	-	Mmc1_1298	-	hypothetical protein
1281	 48.42	-1	1592996..1593658	+	220	117924599	-	Mmc1_1299	-	hypothetical protein
1282	 54.55	0	1593655..1595337	+	560	117924600	-	Mmc1_1300	-	type III restriction enzyme, res subunit
1283	 55.40	0	1595337..1595762	+	141	117924601	-	Mmc1_1301	-	hypothetical protein
1284	 52.02	0	1595780..1596496	+	238	117924602	-	Mmc1_1302	-	hypothetical protein
1285	 56.89	0	1596493..1597269	+	258	117924603	-	Mmc1_1303	-	hypothetical protein
1286	 55.54	0	1597266..1599404	+	712	117924604	-	Mmc1_1304	-	TOPRIM domain-containing protein
1287	 59.88	+1	1599757..1600257	+	166	117924605	-	Mmc1_1305	-	hypothetical protein
1288	 59.82	+1	1600254..1600472	+	72	117924606	-	Mmc1_1306	-	hypothetical protein
1289	 57.39	0	1600465..1600863	+	132	117924607	-	Mmc1_1307	-	hypothetical protein
1290	 52.23	0	1600998..1601288	+	96	117924608	-	Mmc1_1308	-	integration host factor, alpha subunit
1291	 52.75	0	1601348..1602037	+	229	117924609	-	Mmc1_1309	-	deoxyribonuclease I
1292	 56.89	0	1602218..1602616	+	132	117924610	-	Mmc1_1310	-	peptidase M15A
1293	 52.38	0	1602619..1602807	+	62	117924611	-	Mmc1_1311	-	hypothetical protein
1294	 60.00	+1	1602804..1603103	+	99	117924612	-	Mmc1_1312	-	hypothetical protein
1295	 55.17	0	1603825..1604424	+	199	117924613	-	Mmc1_1313	-	hypothetical protein
1296	 49.19	-1	1604426..1604734	-	102	117924614	-	Mmc1_1314	-	plasmid stabilization system protein
1297	 50.79	0	1604731..1604982	-	83	117924615	-	Mmc1_1315	-	CopG/Arc/MetJ family transcriptional regulator
1298	 48.81	-1	1605114..1605992	+	292	117924616	-	Mmc1_1316	-	HNH nuclease
1299	 59.22	+1	1606084..1606647	+	187	117924617	-	Mmc1_1317	-	hypothetical protein
1300	 58.20	0	1606640..1607998	+	452	117924618	-	Mmc1_1318	-	nuclease
1301	 52.91	0	1608032..1608220	-	62	117924619	-	Mmc1_1319	-	hypothetical protein
1302	 55.41	0	1608320..1609021	-	233	117924620	-	Mmc1_1320	-	hypothetical protein
1303	 56.57	0	1609484..1609681	-	65	117924621	-	Mmc1_1321	-	hypothetical protein
1304	 58.59	+1	1609776..1611632	+	618	117924622	-	Mmc1_1322	-	phage terminase GpA
1305	 51.42	0	1611633..1611914	-	93	117924623	-	Mmc1_1323	-	hypothetical protein
1306	 52.14	0	1611932..1612165	+	77	117924624	-	Mmc1_1324	-	hypothetical protein
1307	 58.79	+1	1612165..1613649	+	494	117924625	-	Mmc1_1325	-	lambda family phage portal protein
1308	 58.73	+1	1614072..1615382	+	436	117924626	-	Mmc1_1326	-	serine peptidase
1309	 59.01	+1	1615397..1616062	+	221	117924627	-	Mmc1_1327	-	putative phage protein GP19
1310	 56.90	0	1616065..1617078	+	337	117924628	-	Mmc1_1328	-	hypothetical protein
1311	 59.75	+1	1617081..1617398	+	105	117924629	-	Mmc1_1329	-	hypothetical protein
1312	 55.43	0	1617401..1617658	+	85	117924630	-	Mmc1_1330	-	hypothetical protein
1313	 56.86	0	1617670..1618587	+	305	117924631	-	Mmc1_1331	-	hypothetical protein
1314	 56.39	0	1618590..1618949	+	119	117924632	-	Mmc1_1332	-	hypothetical protein
1315	 54.07	0	1618951..1619355	+	134	117924633	-	Mmc1_1333	-	hypothetical protein
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.