IslandPathversion 1.0

IslandPath Analysis: Magnetococcus sp. MC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.32 STD DEV: 4.16
Magnetococcus sp. MC-1, complete genome - 1..4719581
3716 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1155	 38.94	-2	1474120..1474779	+	219	117924473	-	Mmc1_1173	-	hypothetical protein
1156	 34.44	-2	1474772..1475494	+	240	117924474	-	Mmc1_1174	-	hypothetical protein
1157	 56.97	0	1475644..1476633	-	329	117924475	-	Mmc1_1175	-	polysaccharide deacetylase
1158	 58.47	0	1476630..1477886	-	418	117924476	-	Mmc1_1176	-	hypothetical protein
1159	 60.61	+1	1477883..1478707	-	274	117924477	-	Mmc1_1177	-	hypothetical protein
1160	 56.39	0	1478796..1479155	-	119	117924478	-	Mmc1_1178	-	hypothetical protein
1161	 60.53	+1	1479152..1479526	-	124	117924479	-	Mmc1_1179	-	hemerythrin-like metal-binding protein
1162	 59.32	+1	1479513..1480370	-	285	117924480	-	Mmc1_1180	-	HpcH/HpaI aldolase
1163	 51.72	0	1480367..1480861	-	164	117924481	-	Mmc1_1181	-	hypothetical protein
1164	 60.02	+1	1480976..1481968	+	330	117924482	-	Mmc1_1182	-	hypothetical protein
1165	 59.04	+1	1481940..1483028	-	362	117924483	-	Mmc1_1183	-	molybdate ABC transporter, ATPase subunit
1166	 56.61	0	1483025..1483690	-	221	117924484	-	Mmc1_1184	-	molybdate ABC transporter, inner membrane subunit
1167	 51.70	0	1484002..1484295	-	97	117924485	-	Mmc1_1185	-	hypothetical protein
1168	 51.79	0	1484310..1484504	-	64	117924486	-	Mmc1_1186	-	hypothetical protein
1169	 57.84	0	1484510..1485121	-	203	117924487	-	Mmc1_1187	-	hypothetical protein
1170	 50.40	0	1485118..1485492	-	124	117924488	-	Mmc1_1188	-	ferredoxin
1171	 52.20	0	1485536..1486081	-	181	117924489	-	Mmc1_1189	-	NifZ family protein
1172	 58.40	0	1486062..1487246	-	394	117924490	-	Mmc1_1190	-	homocitrate synthase
1173	 54.40	0	1487292..1487609	-	105	117924491	-	Mmc1_1191	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1174	 49.11	-1	1487654..1488103	-	149	117924492	-	Mmc1_1192	-	hypothetical protein
1175	 53.97	0	1488146..1488586	-	146	117924493	-	Mmc1_1193	-	dinitrogenase iron-molybdenum cofactor biosynthesis
1176	 57.94	0	1488591..1490000	-	469	117924494	-	Mmc1_1194	-	nitrogenase molybdenum-iron cofactor biosynthesis protein NifN
1177	 57.36	0	1489993..1491378	-	461	117924495	-	Mmc1_1195	-	nitrogenase MoFe cofactor biosynthesis protein NifE
1178	 53.81	0	1491905..1493110	+	401	117924496	-	Mmc1_1196	-	hypothetical protein
1179	 51.00	0	1493232..1493531	-	99	117924497	-	Mmc1_1197	-	hypothetical protein
1180	 56.43	0	1493539..1494222	-	227	117924498	-	Mmc1_1198	-	dinitrogenase iron-molybdenum cofactor biosynthesis
1181	 51.60	0	1494325..1494543	-	72	117924499	-	Mmc1_1199	-	NifT/FixU family protein
1182	 53.46	0	1494628..1496202	-	524	117924500	-	Mmc1_1200	-	nitrogenase molybdenum-iron protein beta chain
1183	 53.19	0	1496361..1497800	-	479	117924501	-	Mmc1_1201	-	nitrogenase molybdenum-iron protein alpha chain
1184	 53.87	0	1497890..1498780	-	296	117924502	-	Mmc1_1202	-	nitrogenase iron protein subunit NifH
1185	 49.54	-1	1498982..1499845	+	287	117924503	-	Mmc1_1203	-	NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase
1186	 55.96	0	1500214..1501866	+	550	117924504	-	Mmc1_1204	-	transcriptional regulator NifA
1187	 52.46	0	1502128..1504302	+	724	117924505	-	Mmc1_1205	-	adenylate/guanylate cyclase
1188	 54.27	0	1504620..1506014	+	464	117924506	-	Mmc1_1206	-	nitrogenase cofactor biosynthesis protein NifB
1189	 55.32	0	1506026..1506307	+	93	117924507	-	Mmc1_1207	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1190	 51.93	0	1506324..1506764	+	146	117924508	-	Mmc1_1208	-	nitrogenase-associated protein
1191	 54.96	0	1506774..1507388	+	204	117924509	-	Mmc1_1209	-	NifQ family protein
1192	 55.14	0	1507367..1508320	+	317	117924510	-	Mmc1_1210	-	ADP-ribosyl-(dinitrogen reductase) hydrolase
1193	 59.26	+1	1508376..1508996	+	206	117924511	-	Mmc1_1211	-	nicotinamidase
1194	 57.87	0	1508993..1510333	+	446	117924512	-	Mmc1_1212	-	putative nicotinate phosphoribosyltransferase
1195	 47.42	-1	1510513..1511073	+	186	117924513	-	Mmc1_1213	-	hypothetical protein
1196	 54.34	0	1511106..1511543	+	145	117924514	-	Mmc1_1214	-	hypothetical protein
1197	 51.04	0	1511604..1514438	-	944	117924515	-	Mmc1_1215	-	periplasmic sensor hybrid histidine kinase
1198	 54.39	0	1514498..1515784	-	428	117924516	-	Mmc1_1216	-	signal peptide prediction
1199	 50.66	0	1515849..1518260	-	803	117924517	-	Mmc1_1217	-	multi-sensor hybrid histidine kinase
1200	 55.98	0	1518634..1519101	+	155	117924518	-	Mmc1_1218	-	acetyltransferase
1201	 55.44	0	1519256..1519540	-	94	117924519	-	Mmc1_1219	-	zinc finger CDGSH-type domain-containing protein
1202	 56.24	0	1519598..1520911	-	437	117924520	-	Mmc1_1220	-	histidinol dehydrogenase
1203	 58.41	0	1521163..1522422	-	419	117924521	-	Mmc1_1221	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1204	 48.71	-1	1523324..1524058	-	244	117924522	-	Mmc1_1222	-	beta-lactamase domain-containing protein
1205	 45.93	-2	1524165..1525760	-	531	117924523	-	Mmc1_1223	-	sodium/hydrogen exchanger
1206	 54.14	0	1525910..1527418	-	502	117924524	-	Mmc1_1224	-	transposase IS66
1207	 47.47	-1	1527474..1527770	-	98	117924525	-	Mmc1_1225	-	hypothetical protein
1208	 53.73	0	1527994..1528395	-	133	117924526	-	Mmc1_1226	-	putative bacteriophage-related protein
1209	 54.00	0	1528392..1529717	-	441	117924527	-	Mmc1_1227	-	resolvase domain-containing protein
1210	 55.10	0	1529714..1530154	-	146	117924528	-	Mmc1_1228	-	hypothetical protein
1211	 57.52	0	1531053..1531391	+	112	117924529	-	Mmc1_1229	-	hypothetical protein
1212	 56.73	0	1531499..1532464	+	321	117924530	-	Mmc1_1230	-	hypothetical protein
1213	 54.20	0	1532464..1533297	+	277	117924531	-	Mmc1_1231	-	hypothetical protein
1214	 56.57	0	1533300..1533794	+	164	117924532	-	Mmc1_1232	-	hypothetical protein
1215	 60.35	+1	1533791..1534693	+	300	117924533	-	Mmc1_1233	-	hypothetical protein
1216	 53.43	0	1534699..1535340	+	213	117924534	-	Mmc1_1234	-	hypothetical protein
1217	 55.56	0	1535352..1537034	+	560	117924535	-	Mmc1_1235	-	type III restriction enzyme, res subunit
1218	 56.34	0	1537034..1537459	+	141	117924536	-	Mmc1_1236	-	hypothetical protein
1219	 52.52	0	1537470..1538183	+	237	117924537	-	Mmc1_1237	-	hypothetical protein
1220	 57.01	0	1538180..1538956	+	258	117924538	-	Mmc1_1238	-	hypothetical protein
1221	 55.40	0	1538953..1541091	+	712	117924539	-	Mmc1_1239	-	TOPRIM domain-containing protein
1222	 60.48	+1	1541444..1541944	+	166	117924540	-	Mmc1_1240	-	hypothetical protein
1223	 60.27	+1	1541941..1542159	+	72	117924541	-	Mmc1_1241	-	hypothetical protein
1224	 55.88	0	1542152..1542559	+	135	117924542	-	Mmc1_1242	-	hypothetical protein
1225	 57.51	0	1542805..1543197	+	130	117924543	-	Mmc1_1243	-	peptidase M15A
1226	 50.72	0	1543200..1543475	-	91	117924544	-	Mmc1_1244	-	histone family protein DNA-binding protein
1227	 58.20	0	1543578..1543766	+	62	117924545	-	Mmc1_1245	-	hypothetical protein
1228	 60.61	+1	1543763..1544059	+	98	117924546	-	Mmc1_1246	-	hypothetical protein
1229	 57.33	0	1544056..1544655	+	199	117924547	-	Mmc1_1247	-	hypothetical protein
1230	 42.87	-2	1544658..1545506	-	282	117924548	-	Mmc1_1248	-	hypothetical protein
1231	 56.63	0	1545860..1547194	+	444	117924549	-	Mmc1_1249	-	nuclease
1232	 43.98	-2	1547248..1547463	+	71	117924550	-	Mmc1_1250	-	cold-shock DNA-binding protein family protein
1233	 48.19	-1	1547493..1547768	+	91	117924551	-	Mmc1_1251	-	histone family protein DNA-binding protein
1234	 54.28	0	1547823..1548500	-	225	117924552	-	Mmc1_1252	-	hypothetical protein
1235	 54.04	0	1548527..1548724	-	65	117924553	-	Mmc1_1253	-	hypothetical protein
1236	 59.24	+1	1548821..1549345	+	174	117924554	-	Mmc1_1254	-	hypothetical protein
1237	 46.28	-1	1549348..1549656	-	102	117924555	-	Mmc1_1255	-	CcdB-like toxin protein
1238	 46.75	-1	1549656..1549901	-	81	117924556	-	Mmc1_1256	-	post-segregation antitoxin CcdA
1239	 55.52	0	1550003..1551859	+	618	117924557	-	Mmc1_1257	-	phage terminase GpA
1240	 51.42	0	1551860..1552141	-	93	117924558	-	Mmc1_1258	-	hypothetical protein
1241	 50.46	0	1552177..1552392	+	71	117924559	-	Mmc1_1259	-	hypothetical protein
1242	 58.99	+1	1552392..1553876	+	494	117924560	-	Mmc1_1260	-	lambda family phage portal protein
1243	 58.31	0	1553935..1555191	+	418	117924561	-	Mmc1_1261	-	serine peptidase
1244	 60.66	+1	1555206..1555871	+	221	117924562	-	Mmc1_1262	-	putative phage protein GP19
1245	 57.30	0	1555874..1556887	+	337	117924563	-	Mmc1_1263	-	hypothetical protein
1246	 57.23	0	1556890..1557207	+	105	117924564	-	Mmc1_1264	-	hypothetical protein
1247	 55.43	0	1557210..1557467	+	85	117924565	-	Mmc1_1265	-	hypothetical protein
1248	 56.97	0	1557479..1558396	+	305	117924566	-	Mmc1_1266	-	hypothetical protein
1249	 56.45	0	1558399..1558770	+	123	117924567	-	Mmc1_1267	-	hypothetical protein
1250	 52.55	0	1558772..1559182	+	136	117924568	-	Mmc1_1268	-	hypothetical protein
1251	 54.79	0	1559188..1559928	+	246	117924569	-	Mmc1_1269	-	hypothetical protein
1252	 55.01	0	1559934..1560302	+	122	117924570	-	Mmc1_1270	-	hypothetical protein
1253	 45.41	-2	1560398..1560952	-	184	117924571	-	Mmc1_1271	-	hypothetical protein
1254	 59.97	+1	1561033..1564584	+	1183	117924572	-	Mmc1_1272	-	TP901 family phage tail tape measure protein
54.32	MEAN

4.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.