IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.00   STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
916	 37.76	0	960748..961221	+	157	16802964	-	lmo0923	-	hypothetical protein
917	 38.80	0	961469..962584	+	371	16802965	-	lmo0925	-	hypothetical protein
918	 36.83	0	962607..963263	+	218	16802966	-	lmo0926	-	hypothetical protein
919	 36.34	0	963294..965255	-	653	16802967	-	lmo0927	-	hypothetical protein
920	 39.42	0	965513..966136	+	207	16802968	-	lmo0928	-	hypothetical protein
921	 34.08	-1	966245..966913	+	222	16802969	-	lmo0929	-	hypothetical protein
922	 38.66	0	967029..967760	+	243	16802970	-	lmo0930	-	hypothetical protein
923	 35.84	0	967784..968779	+	331	16802971	-	lmo0931	-	hypothetical protein
924	 33.00	-1	968819..969424	-	201	16802972	-	lmo0932	-	hypothetical protein
925	 35.76	0	969549..970496	-	315	16802973	-	lmo0933	-	hypothetical protein
926	 42.11	+1	971037..972176	+	379	16802974	-	lmo0934	-	hypothetical protein
927	 35.49	0	972197..972706	+	169	16802975	-	lmo0935	-	hypothetical protein
928	 39.27	0	972719..973459	+	246	16802976	-	lmo0936	-	hypothetical protein
929	 28.40	-2	973509..973670	-	53	16802977	-	lmo0937	-	hypothetical protein
930	 39.65	0	973758..974216	-	152	16802978	-	lmo0938	-	hypothetical protein
931	 34.00	-1	974229..974975	-	248	16802979	-	lmo0939	-	hypothetical protein
932	 38.01	0	975071..976033	-	320	16802980	-	lmo0940	-	hypothetical protein
933	 36.92	0	976065..977039	-	324	16802981	-	lmo0941	-	hypothetical protein
934	 36.27	0	977051..978856	-	601	16802982	-	lmo0942	-	hypothetical protein
935	 35.24	0	979059..979529	+	156	16802983	fri	lmo0943	-	non-heme iron-binding ferritin
936	 36.96	0	979762..980064	+	100	16802984	-	lmo0944	-	hypothetical protein
937	 37.40	0	980177..981307	+	376	16802985	-	lmo0945	-	hypothetical protein
938	 34.21	-1	981317..981544	+	75	16802986	-	lmo0946	-	hypothetical protein
939	 37.77	0	981743..982960	-	405	16802987	-	lmo0947	-	hypothetical protein
940	 38.99	0	982957..983646	-	229	16802988	-	lmo0948	-	hypothetical protein
941	 33.24	-1	983768..984814	+	348	16802989	-	lmo0949	-	hypothetical protein
942	 35.78	0	984823..985722	-	299	16802990	-	lmo0950	-	hypothetical protein
943	 35.64	0	985743..986564	-	273	16802991	-	lmo0951	-	hypothetical protein
944	 36.38	0	986722..987180	+	152	16802992	-	lmo0952	-	hypothetical protein
945	 42.54	+1	987274..987501	+	75	16802993	-	lmo0953	-	hypothetical protein
946	 33.97	-1	987735..988049	+	104	16802994	-	lmo0954	-	hypothetical protein
947	 33.22	-1	988065..988910	+	281	16802995	-	lmo0955	-	hypothetical protein
948	 38.98	0	989099..990232	+	377	16802996	-	lmo0956	-	hypothetical protein
949	 37.02	0	990248..990952	+	234	16802997	-	lmo0957	-	hypothetical protein
950	 40.66	0	990968..991690	+	240	16802998	-	lmo0958	-	hypothetical protein
951	 35.32	0	991810..992865	+	351	16802999	-	lmo0959	-	hypothetical protein
952	 39.49	0	992978..993886	+	302	16803000	-	lmo0960	-	hypothetical protein
953	 40.67	0	993900..995126	+	408	16803001	-	lmo0961	-	hypothetical protein
954	 35.66	0	995210..995767	+	185	16803002	lemA	lmo0962	-	epitope LemA
955	 38.91	0	995790..996704	+	304	16803003	-	lmo0963	-	heat shock protein HtpX
956	 37.73	0	996739..997557	-	272	16803004	-	lmo0964	-	hypothetical protein
957	 34.53	-1	997795..998379	-	194	16803005	-	lmo0965	-	hypothetical protein
958	 40.17	0	998396..998863	-	155	16803006	-	lmo0966	-	hypothetical protein
959	 37.22	0	999022..999690	+	222	16803007	-	lmo0967	-	hypothetical protein
960	 39.25	0	999722..1000516	+	264	16803008	ppnK	lmo0968	-	inorganic polyphosphate/ATP-NAD kinase
961	 38.38	0	1000535..1001425	+	296	16803009	-	lmo0969	-	hypothetical protein
962	 38.78	0	1001503..1002291	+	262	16803010	-	lmo0970	-	enoyl-(acyl carrier protein) reductase
963	 36.39	0	1002319..1003593	-	424	16803011	dltD	lmo0971	-	DltD protein for D-alanine esterification of lipoteichoic acid and wall teichoic acid
964	 32.91	-1	1003593..1003829	-	78	16803012	dltC	lmo0972	-	D-alanine--poly(phosphoribitol) ligase subunit 2
965	 35.61	0	1003855..1005039	-	394	16803013	dltB	lmo0973	-	DltB protein for D-alanine esterification of lipoteichoic acid and wall teichoic acid
966	 38.10	0	1005036..1006568	-	510	16803014	dltA	lmo0974	-	D-alanine--D-alanyl carrier protein ligase
967	 36.44	0	1006959..1007633	+	224	16803015	-	lmo0975	-	hypothetical protein
968	 41.22	0	1007669..1008112	-	147	16803016	-	lmo0976	-	hypothetical protein
969	 36.80	0	1008130..1008879	-	249	16803017	-	lmo0977	-	hypothetical protein
970	 38.63	0	1009098..1010117	+	339	16803018	-	lmo0978	-	branched-chain amino acid aminotransferase
971	 40.26	0	1010313..1011077	+	254	16803019	-	lmo0979	-	hypothetical protein
972	 38.91	0	1011074..1011826	+	250	16803020	-	lmo0980	-	hypothetical protein
973	 39.57	0	1011860..1013335	-	491	16803021	-	lmo0981	-	hypothetical protein
974	 38.08	0	1013475..1014527	+	350	16803022	-	lmo0982	-	hypothetical protein
975	 32.71	-1	1014540..1015019	+	159	16803023	-	lmo0983	-	hypothetical protein
976	 33.11	-1	1015153..1015608	+	151	16803024	-	lmo0984	-	hypothetical protein
977	 34.73	0	1015605..1016033	+	142	16803025	-	lmo0985	-	hypothetical protein
978	 36.29	0	1016030..1016941	+	303	16803026	-	lmo0986	-	hypothetical protein
979	 36.73	0	1016934..1017788	+	284	16803027	-	lmo0987	-	hypothetical protein
980	 40.41	0	1017870..1019438	+	522	16803028	prfC	lmo0988	-	peptide chain release factor 3
981	 36.85	0	1019545..1019970	+	141	16803029	-	lmo0989	-	hypothetical protein
982	 39.50	0	1020022..1021383	+	453	16803030	-	lmo0990	-	hypothetical protein
983	 39.84	0	1021665..1022432	+	255	16803031	-	lmo0991	-	hypothetical protein
984	 38.93	0	1022535..1023302	+	255	16803032	-	lmo0992	-	hypothetical protein
985	 37.90	0	1023346..1024680	+	444	16803033	-	lmo0993	-	hypothetical protein
986	 34.69	0	1024761..1025129	-	122	16803034	-	lmo0994	-	hypothetical protein
987	 33.62	-1	1025159..1026190	-	343	16803035	-	lmo0995	-	hypothetical protein
988	 37.71	0	1026376..1026855	+	159	16803036	-	lmo0996	-	hypothetical protein
989	 39.72	0	1026871..1029045	-	724	16803037	clpE	lmo0997	-	ATP-dependent protease
990	 35.29	0	1029208..1029819	-	203	16803038	-	lmo0998	-	hypothetical protein
991	 34.97	0	1029965..1030756	+	263	16803039	-	lmo0999	-	hypothetical protein
992	 35.64	0	1030757..1032229	-	490	16803040	-	lmo1000	-	hypothetical protein
993	 32.63	-1	1032333..1032617	-	94	16803041	-	lmo1001	-	hypothetical protein
994	 39.33	0	1032924..1033190	+	88	16803042	ptsH	lmo1002	-	phosphocarrier protein HPr
995	 38.86	0	1033190..1034908	+	572	16803043	-	lmo1003	-	phosphotransferase system enzyme I
996	 33.33	-1	1035021..1036055	+	344	16803044	-	lmo1004	-	hypothetical protein
997	 40.53	0	1036068..1036928	+	286	16803045	-	lmo1005	-	hypothetical protein
998	 39.18	0	1036971..1038116	-	381	16803046	-	lmo1006	-	hypothetical protein
999	 37.39	0	1038336..1038557	+	73	16803047	-	lmo1007	-	hypothetical protein
1000	 34.19	-1	1038863..1039096	+	77	16803048	-	lmo1008	-	hypothetical protein
1001	 34.44	-1	1039297..1039749	+	150	16803049	-	lmo1009	-	hypothetical protein
1002	 38.11	0	1039746..1040624	+	292	16803050	-	lmo1010	-	hypothetical protein
1003	 41.07	0	1040672..1041382	+	236	16803051	-	lmo1011	-	hypothetical protein
1004	 39.70	0	1041446..1042561	+	371	16803052	-	lmo1012	-	hypothetical protein
1005	 37.83	0	1042605..1043450	-	281	16803053	-	lmo1013	-	hypothetical protein
1006	 38.94	0	1043821..1045014	+	397	16803054	gbuA	lmo1014	-	hypothetical protein
1007	 39.81	0	1045007..1045855	+	282	16803055	gbuB	lmo1015	-	hypothetical protein
1008	 38.10	0	1045869..1046771	+	300	16803056	gbuC	lmo1016	-	hypothetical protein
1009	 35.57	0	1046886..1047377	+	163	16803057	-	lmo1017	-	hypothetical protein
1010	 39.94	0	1047490..1048185	+	231	16803058	-	lmo1018	-	hypothetical protein
1011	 38.83	0	1048266..1049138	+	290	16803059	-	lmo1019	-	hypothetical protein
1012	 38.10	0	1049273..1049986	+	237	16803060	-	lmo1020	-	hypothetical protein
1013	 38.62	0	1049983..1051041	+	352	16803061	-	lmo1021	-	hypothetical protein
1014	 38.65	0	1051038..1051676	+	212	16803062	-	lmo1022	-	hypothetical protein
1015	 39.39	0	1051695..1052354	+	219	16803063	-	lmo1023	-	hypothetical protein
38.00	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.