IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
861	 32.08	-1	908499..909056	-	185	16802909	-	lmo0868	-	hypothetical protein
862	 35.64	0	909159..910157	+	332	16802910	-	lmo0869	-	hypothetical protein
863	 35.26	0	910173..910484	+	103	16802911	-	lmo0870	-	hypothetical protein
864	 40.40	0	910517..910870	-	117	16802912	-	lmo0871	-	hypothetical protein
865	 40.10	0	910998..912164	+	388	16802913	-	lmo0872	-	hypothetical protein
866	 36.31	0	912372..914390	+	672	16802914	-	lmo0873	-	hypothetical protein
867	 34.85	0	914405..914734	+	109	16802915	-	lmo0874	-	hypothetical protein
868	 34.82	0	914735..915070	+	111	16802916	-	lmo0875	-	hypothetical protein
869	 40.42	0	915090..916415	+	441	16802917	-	lmo0876	-	hypothetical protein
870	 39.64	0	916436..917164	+	242	16802918	-	lmo0877	-	hypothetical protein
871	 43.29	+1	917164..918117	+	317	16802919	-	lmo0878	-	hypothetical protein
872	 39.32	0	918135..918902	+	255	16802920	-	lmo0879	-	hypothetical protein
873	 37.65	0	919020..920408	+	462	16802921	-	lmo0880	-	hypothetical protein
874	 36.90	0	920452..920928	-	158	16802922	-	lmo0881	-	hypothetical protein
875	 39.54	0	921062..921544	+	160	16802923	-	lmo0882	-	hypothetical protein
876	 40.45	0	921537..923012	+	491	16802924	-	lmo0883	-	hypothetical protein
877	 41.74	+1	923161..924540	+	459	16802925	-	lmo0884	-	protoporphyrinogen oxidase
878	 37.54	0	924542..924898	+	118	16802926	-	lmo0885	-	hypothetical protein
879	 41.64	+1	924917..926023	+	368	16802927	dal	lmo0886	-	hypothetical protein
880	 40.86	0	926229..926507	+	92	16802928	-	lmo0887	-	hypothetical protein
881	 42.24	+1	926511..926858	+	115	16802929	-	lmo0888	-	hypothetical protein
882	 37.51	0	927110..927946	+	278	16802930	RsbR	lmo0889	-	hypothetical protein
883	 38.10	0	927952..928308	+	118	16802931	rsbS	lmo0890	-	hypothetical protein
884	 37.47	0	928311..928721	+	136	16802932	rsbT	lmo0891	-	hypothetical protein
885	 36.62	0	928738..929742	+	334	16802933	rsbU	lmo0892	-	hypothetical protein
886	 37.68	0	929892..930236	+	114	16802934	rsbV	lmo0893	-	anti-anti-sigma factor (antagonist of RsbW)
887	 38.40	0	930220..930693	+	157	16802935	rsbW	lmo0894	-	serine-protein kinase RsbW
888	 38.85	0	930671..931450	+	259	16802936	sigB	lmo0895	-	RNA polymerase sigma factor SigB
889	 36.83	0	931451..932050	+	199	16802937	rsbX	lmo0896	-	indirect negative regulation of sigma B dependant gene expression (serine phosphatase)
890	 39.61	0	932257..933882	+	541	16802938	-	lmo0897	-	hypothetical protein
891	 39.35	0	933959..936136	+	725	16802939	-	lmo0898	-	hypothetical protein
892	 40.38	0	936136..936603	+	155	16802940	-	lmo0899	-	hypothetical protein
893	 36.64	0	937202..937594	+	130	16802941	-	lmo0900	-	hypothetical protein
894	 38.31	0	937739..939025	+	428	16802942	-	lmo0901	-	hypothetical protein
895	 39.22	0	939106..939819	+	237	16802943	-	lmo0902	-	hypothetical protein
896	 34.65	0	940316..940696	+	126	16802944	-	lmo0903	-	hypothetical protein
897	 37.63	0	940810..941484	+	224	16802945	-	lmo0904	-	hypothetical protein
898	 42.97	+1	941615..942112	+	165	16802946	-	lmo0905	-	hypothetical protein
899	 42.59	+1	942148..943497	+	449	16802947	-	lmo0906	-	glutathione reductase
900	 42.96	+1	943526..944200	+	224	16802948	-	lmo0907	-	hypothetical protein
901	 35.27	0	944243..945379	-	378	16802949	-	lmo0908	-	hypothetical protein
902	 39.95	0	945520..945912	+	130	16802950	-	lmo0909	-	hypothetical protein
903	 35.42	0	945915..947018	+	367	16802951	-	lmo0910	-	hypothetical protein
904	 37.30	0	947101..947604	+	167	16802952	-	lmo0911	-	hypothetical protein
905	 41.45	+1	947718..948530	+	270	16802953	-	lmo0912	-	hypothetical protein
906	 38.85	0	948754..950220	+	488	16802954	-	lmo0913	-	hypothetical protein
907	 37.25	0	950363..950668	+	101	16802955	-	lmo0914	-	hypothetical protein
908	 38.06	0	950673..951941	+	422	16802956	-	lmo0915	-	hypothetical protein
909	 37.61	0	951956..952306	+	116	16802957	-	lmo0916	-	hypothetical protein
910	 37.05	0	952318..953769	+	483	16802958	-	lmo0917	-	hypothetical protein
911	 35.60	0	953842..955740	+	632	16802959	-	lmo0918	-	hypothetical protein
912	 37.85	0	956031..957602	+	523	16802960	-	lmo0919	-	hypothetical protein
913	 39.77	0	957724..958764	+	346	16802961	-	lmo0920	-	hypothetical protein
914	 34.76	0	958783..959622	+	279	16802962	-	lmo0921	-	hypothetical protein
915	 37.46	0	959711..960631	+	306	16802963	-	lmo0922	-	pantothenate kinase
916	 37.76	0	960748..961221	+	157	16802964	-	lmo0923	-	hypothetical protein
917	 38.80	0	961469..962584	+	371	16802965	-	lmo0925	-	hypothetical protein
918	 36.83	0	962607..963263	+	218	16802966	-	lmo0926	-	hypothetical protein
919	 36.34	0	963294..965255	-	653	16802967	-	lmo0927	-	hypothetical protein
920	 39.42	0	965513..966136	+	207	16802968	-	lmo0928	-	hypothetical protein
921	 34.08	-1	966245..966913	+	222	16802969	-	lmo0929	-	hypothetical protein
922	 38.66	0	967029..967760	+	243	16802970	-	lmo0930	-	hypothetical protein
923	 35.84	0	967784..968779	+	331	16802971	-	lmo0931	-	hypothetical protein
924	 33.00	-1	968819..969424	-	201	16802972	-	lmo0932	-	hypothetical protein
925	 35.76	0	969549..970496	-	315	16802973	-	lmo0933	-	hypothetical protein
926	 42.11	+1	971037..972176	+	379	16802974	-	lmo0934	-	hypothetical protein
927	 35.49	0	972197..972706	+	169	16802975	-	lmo0935	-	hypothetical protein
928	 39.27	0	972719..973459	+	246	16802976	-	lmo0936	-	hypothetical protein
929	 28.40	-2	973509..973670	-	53	16802977	-	lmo0937	-	hypothetical protein
930	 39.65	0	973758..974216	-	152	16802978	-	lmo0938	-	hypothetical protein
931	 34.00	-1	974229..974975	-	248	16802979	-	lmo0939	-	hypothetical protein
932	 38.01	0	975071..976033	-	320	16802980	-	lmo0940	-	hypothetical protein
933	 36.92	0	976065..977039	-	324	16802981	-	lmo0941	-	hypothetical protein
934	 36.27	0	977051..978856	-	601	16802982	-	lmo0942	-	hypothetical protein
935	 35.24	0	979059..979529	+	156	16802983	fri	lmo0943	-	non-heme iron-binding ferritin
936	 36.96	0	979762..980064	+	100	16802984	-	lmo0944	-	hypothetical protein
937	 37.40	0	980177..981307	+	376	16802985	-	lmo0945	-	hypothetical protein
938	 34.21	-1	981317..981544	+	75	16802986	-	lmo0946	-	hypothetical protein
939	 37.77	0	981743..982960	-	405	16802987	-	lmo0947	-	hypothetical protein
940	 38.99	0	982957..983646	-	229	16802988	-	lmo0948	-	hypothetical protein
941	 33.24	-1	983768..984814	+	348	16802989	-	lmo0949	-	hypothetical protein
942	 35.78	0	984823..985722	-	299	16802990	-	lmo0950	-	hypothetical protein
943	 35.64	0	985743..986564	-	273	16802991	-	lmo0951	-	hypothetical protein
944	 36.38	0	986722..987180	+	152	16802992	-	lmo0952	-	hypothetical protein
945	 42.54	+1	987274..987501	+	75	16802993	-	lmo0953	-	hypothetical protein
946	 33.97	-1	987735..988049	+	104	16802994	-	lmo0954	-	hypothetical protein
947	 33.22	-1	988065..988910	+	281	16802995	-	lmo0955	-	hypothetical protein
948	 38.98	0	989099..990232	+	377	16802996	-	lmo0956	-	hypothetical protein
949	 37.02	0	990248..990952	+	234	16802997	-	lmo0957	-	hypothetical protein
950	 40.66	0	990968..991690	+	240	16802998	-	lmo0958	-	hypothetical protein
951	 35.32	0	991810..992865	+	351	16802999	-	lmo0959	-	hypothetical protein
952	 39.49	0	992978..993886	+	302	16803000	-	lmo0960	-	hypothetical protein
953	 40.67	0	993900..995126	+	408	16803001	-	lmo0961	-	hypothetical protein
954	 35.66	0	995210..995767	+	185	16803002	lemA	lmo0962	-	epitope LemA
955	 38.91	0	995790..996704	+	304	16803003	-	lmo0963	-	heat shock protein HtpX
956	 37.73	0	996739..997557	-	272	16803004	-	lmo0964	-	hypothetical protein
957	 34.53	-1	997795..998379	-	194	16803005	-	lmo0965	-	hypothetical protein
958	 40.17	0	998396..998863	-	155	16803006	-	lmo0966	-	hypothetical protein
959	 37.22	0	999022..999690	+	222	16803007	-	lmo0967	-	hypothetical protein
960	 39.25	0	999722..1000516	+	264	16803008	ppnK	lmo0968	-	inorganic polyphosphate/ATP-NAD kinase
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.