IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.00   STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
790	 40.30	0	823638..824168	-	176	16802838	-	lmo0796	-	hypothetical protein
791	 34.85	0	824423..824884	+	153	16802839	-	lmo0797	-	hypothetical protein
792	 40.31	0	824936..826396	-	486	16802840	-	lmo0798	-	hypothetical protein
793	 35.43	0	826752..827513	-	253	16802841	-	lmo0799	-	hypothetical protein
794	 35.04	0	827666..828016	+	116	16802842	-	lmo0800	-	hypothetical protein
795	 31.63	-1	828168..830108	+	646	16802843	-	lmo0801	-	hypothetical protein
796	 33.18	-1	830259..830897	+	212	16802844	-	lmo0802	-	hypothetical protein
797	 38.46	0	831025..833073	+	682	16802845	-	lmo0803	-	hypothetical protein
798	 32.48	-1	833117..833587	-	156	16802846	-	lmo0804	-	hypothetical protein
799	 32.25	-1	833615..834076	-	153	16802847	-	lmo0805	-	hypothetical protein
800	 36.46	0	834287..834829	+	180	16802848	-	lmo0806	-	hypothetical protein
801	 38.26	0	834845..835939	+	364	16802849	-	lmo0807	-	hypothetical protein
802	 36.30	0	835939..836748	+	269	16802850	-	lmo0808	-	hypothetical protein
803	 38.41	0	836745..837551	+	268	16802851	-	lmo0809	-	hypothetical protein
804	 39.20	0	837548..838621	+	357	16802852	-	lmo0810	-	hypothetical protein
805	 38.03	0	838751..839452	+	233	16802853	-	lmo0811	-	hypothetical protein
806	 42.17	+1	839520..840062	+	180	16802854	-	lmo0812	-	hypothetical protein
807	 42.38	+1	840200..841072	+	290	16802855	-	lmo0813	-	hypothetical protein
808	 44.84	+2	841157..842086	+	309	16802856	-	lmo0814	-	hypothetical protein
809	 30.02	-2	842313..842765	+	150	16802857	-	lmo0815	-	hypothetical protein
810	 29.19	-2	842781..843287	+	168	16802858	-	lmo0816	-	hypothetical protein
811	 40.82	0	843311..843724	-	137	16802859	-	lmo0817	-	hypothetical protein
812	 41.58	+1	843949..846579	+	876	16802860	-	lmo0818	-	hypothetical protein
813	 37.22	0	846594..847442	+	282	16802861	-	lmo0819	-	hypothetical protein
814	 38.71	0	847552..848109	+	185	16802862	-	lmo0820	-	hypothetical protein
815	 34.24	-1	848126..848788	+	220	16802863	-	lmo0821	-	hypothetical protein
816	 41.03	0	848804..849193	-	129	16802864	-	lmo0822	-	hypothetical protein
817	 38.67	0	849314..850138	+	274	16802865	-	lmo0823	-	hypothetical protein
818	 41.07	0	850216..851184	+	322	16802866	-	lmo0824	-	hypothetical protein
819	 42.15	+1	851225..852505	+	426	16802867	-	lmo0825	-	hypothetical protein
820	 40.24	0	852704..854338	+	544	16802868	-	lmo0826	-	hypothetical protein
821	 33.99	-1	854443..854748	+	101	16802869	-	lmo0827	-	hypothetical protein
822	 35.84	0	854745..855581	+	278	16802870	-	lmo0828	-	hypothetical protein
823	 42.13	+1	855759..859406	+	1215	16802871	nifJ	lmo0829	-	hypothetical protein
824	 37.05	0	859656..861617	-	653	16802872	fbp	lmo0830	-	hypothetical protein
825	 37.50	0	861731..862642	-	303	16802873	-	lmo0831	-	hypothetical protein
826	 27.02	-2	863322..863606	+	94	16802874	-	lmo0832	-	hypothetical protein
827	 33.00	-1	863798..864688	+	296	16802875	-	lmo0833	-	hypothetical protein
828	 30.67	-2	864824..865537	+	237	16802876	-	lmo0834	-	hypothetical protein
829	 34.73	0	865530..866534	+	334	16802877	-	lmo0835	-	peptidoglycan binding protein
830	 34.30	-1	866577..866990	-	137	16802878	-	lmo0836	-	phosphate-starvation-inducible protein PsiE
831	 36.29	0	869095..870480	+	461	16802879	uhpT	lmo0838	-	sugar phosphate antiporter
832	 41.77	+1	870587..871807	-	406	16802880	-	lmo0839	-	hypothetical protein
833	 33.33	-1	871940..872410	-	156	16802881	-	lmo0840	-	hypothetical protein
834	 42.15	+1	872616..875258	+	880	16802882	-	lmo0841	-	hypothetical protein
835	 36.67	0	875721..881855	+	2044	16802883	-	lmo0842	-	peptidoglycan binding protein
836	 39.15	0	881992..882249	-	85	16802884	-	lmo0843	-	hypothetical protein
837	 38.62	0	882328..882705	+	125	16802885	-	lmo0844	-	hypothetical protein
838	 41.21	0	882962..884065	+	367	16802886	-	lmo0845	-	hypothetical protein
839	 34.24	-1	884170..885270	+	366	16802887	-	lmo0846	-	hypothetical protein
840	 37.01	0	885440..886882	+	480	16802888	-	lmo0847	-	hypothetical protein
841	 38.41	0	886875..887603	+	242	16802889	-	lmo0848	-	hypothetical protein
842	 37.01	0	887652..889502	-	616	16802890	-	lmo0849	-	amidase
843	 33.33	-1	890069..890215	+	48	16802891	-	lmo0850	-	hypothetical protein
844	 35.57	0	890439..891197	+	252	16802892	-	lmo0851	-	hypothetical protein
845	 40.72	0	891277..891831	+	184	16802893	-	lmo0852	-	hypothetical protein
846	 38.01	0	891848..892189	+	113	16802894	-	lmo0853	-	hypothetical protein
847	 38.32	0	892192..892512	+	106	16802895	-	lmo0854	-	hypothetical protein
848	 39.71	0	892662..893774	+	370	16802896	ddl	lmo0855	-	D-alanyl-alanine synthetase A
849	 40.17	0	893838..895211	+	457	16802897	murF	lmo0856	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase
850	 38.80	0	895278..895991	+	237	16802898	-	lmo0857	-	hypothetical protein
851	 37.62	0	896003..897028	-	341	16802899	-	lmo0858	-	hypothetical protein
852	 38.71	0	897273..898592	+	439	16802900	-	lmo0859	-	hypothetical protein
853	 37.77	0	898589..899467	+	292	16802901	-	lmo0860	-	hypothetical protein
854	 39.33	0	899454..900287	+	277	16802902	-	lmo0861	-	hypothetical protein
855	 39.99	0	900303..901835	+	510	16802903	-	lmo0862	-	hypothetical protein
856	 40.66	0	901837..902751	+	304	16802904	-	lmo0863	-	hypothetical protein
857	 38.39	0	902773..903840	+	355	16802905	-	lmo0864	-	hypothetical protein
858	 41.04	0	903837..905510	+	557	16802906	-	lmo0865	-	hypothetical protein
859	 42.48	+1	905962..907524	+	520	16802907	-	lmo0866	-	hypothetical protein
860	 35.99	0	907979..908467	+	162	16802908	-	lmo0867	-	hypothetical protein
861	 32.08	-1	908499..909056	-	185	16802909	-	lmo0868	-	hypothetical protein
862	 35.64	0	909159..910157	+	332	16802910	-	lmo0869	-	hypothetical protein
863	 35.26	0	910173..910484	+	103	16802911	-	lmo0870	-	hypothetical protein
864	 40.40	0	910517..910870	-	117	16802912	-	lmo0871	-	hypothetical protein
865	 40.10	0	910998..912164	+	388	16802913	-	lmo0872	-	hypothetical protein
866	 36.31	0	912372..914390	+	672	16802914	-	lmo0873	-	hypothetical protein
867	 34.85	0	914405..914734	+	109	16802915	-	lmo0874	-	hypothetical protein
868	 34.82	0	914735..915070	+	111	16802916	-	lmo0875	-	hypothetical protein
869	 40.42	0	915090..916415	+	441	16802917	-	lmo0876	-	hypothetical protein
870	 39.64	0	916436..917164	+	242	16802918	-	lmo0877	-	hypothetical protein
871	 43.29	+1	917164..918117	+	317	16802919	-	lmo0878	-	hypothetical protein
872	 39.32	0	918135..918902	+	255	16802920	-	lmo0879	-	hypothetical protein
873	 37.65	0	919020..920408	+	462	16802921	-	lmo0880	-	hypothetical protein
874	 36.90	0	920452..920928	-	158	16802922	-	lmo0881	-	hypothetical protein
875	 39.54	0	921062..921544	+	160	16802923	-	lmo0882	-	hypothetical protein
876	 40.45	0	921537..923012	+	491	16802924	-	lmo0883	-	hypothetical protein
877	 41.74	+1	923161..924540	+	459	16802925	-	lmo0884	-	protoporphyrinogen oxidase
878	 37.54	0	924542..924898	+	118	16802926	-	lmo0885	-	hypothetical protein
879	 41.64	+1	924917..926023	+	368	16802927	dal	lmo0886	-	hypothetical protein
880	 40.86	0	926229..926507	+	92	16802928	-	lmo0887	-	hypothetical protein
881	 42.24	+1	926511..926858	+	115	16802929	-	lmo0888	-	hypothetical protein
882	 37.51	0	927110..927946	+	278	16802930	RsbR	lmo0889	-	hypothetical protein
883	 38.10	0	927952..928308	+	118	16802931	rsbS	lmo0890	-	hypothetical protein
884	 37.47	0	928311..928721	+	136	16802932	rsbT	lmo0891	-	hypothetical protein
885	 36.62	0	928738..929742	+	334	16802933	rsbU	lmo0892	-	hypothetical protein
886	 37.68	0	929892..930236	+	114	16802934	rsbV	lmo0893	-	anti-anti-sigma factor (antagonist of RsbW)
887	 38.40	0	930220..930693	+	157	16802935	rsbW	lmo0894	-	serine-protein kinase RsbW
888	 38.85	0	930671..931450	+	259	16802936	sigB	lmo0895	-	RNA polymerase sigma factor SigB
889	 36.83	0	931451..932050	+	199	16802937	rsbX	lmo0896	-	indirect negative regulation of sigma B dependant gene expression (serine phosphatase)
38.00	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.