IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
760	 35.58	0	791977..792867	+	296	16802808	-	lmo0766	-	hypothetical protein
761	 34.82	0	792879..793754	+	291	16802809	-	lmo0767	-	hypothetical protein
762	 36.04	0	793777..795030	+	417	16802810	-	lmo0768	-	hypothetical protein
763	 34.99	0	795034..796062	+	342	16802811	-	lmo0769	-	hypothetical protein
764	 34.67	0	796075..797193	-	372	16802812	-	lmo0770	-	hypothetical protein
765	 31.47	-1	797353..798105	+	250	16802813	-	lmo0771	-	hypothetical protein
766	 32.56	-1	798141..798788	+	215	16802814	-	lmo0772	-	hypothetical protein
767	 39.80	0	798828..799817	-	329	16802815	-	lmo0773	-	hypothetical protein
768	 42.58	+1	799996..800925	+	309	16802816	-	lmo0774	-	hypothetical protein
769	 36.94	0	800965..801297	+	110	16802817	-	lmo0775	-	hypothetical protein
770	 41.06	0	801336..802202	-	288	16802818	-	lmo0776	-	hypothetical protein
771	 39.32	0	802356..802739	+	127	16802819	-	lmo0777	-	hypothetical protein
772	 34.48	-1	803201..803548	+	115	16802820	-	lmo0778	-	hypothetical protein
773	 38.46	0	803745..804212	-	155	16802821	-	lmo0779	-	hypothetical protein
774	 31.03	-2	804382..804729	+	115	16802822	-	lmo0780	-	hypothetical protein
775	 42.43	+1	804887..805765	-	292	16802823	-	lmo0781	-	mannose-specific PTS system protein IID
776	 42.68	+1	805784..806596	-	270	16802824	-	lmo0782	-	hypothetical protein
777	 38.07	0	806770..807255	-	161	16802825	-	lmo0783	-	hypothetical protein
778	 40.00	0	807255..807689	-	144	16802826	-	lmo0784	-	hypothetical protein
779	 37.88	0	807976..810792	-	938	16802827	-	lmo0785	-	hypothetical protein
780	 35.38	0	810985..811620	+	211	16802828	-	lmo0786	-	hypothetical protein
781	 38.13	0	811813..813189	+	458	16802829	-	lmo0787	-	hypothetical protein
782	 40.54	0	813451..817878	+	1475	16802830	-	lmo0788	-	hypothetical protein
783	 33.57	-1	817914..818762	-	282	16802831	-	lmo0789	-	hypothetical protein
784	 40.67	0	818789..819265	-	158	16802832	-	lmo0790	-	hypothetical protein
785	 34.72	0	819389..820039	+	216	16802833	-	lmo0791	-	hypothetical protein
786	 37.04	0	820145..821035	+	296	16802834	-	lmo0792	-	hypothetical protein
787	 40.88	0	821070..821771	-	233	16802835	-	lmo0793	-	hypothetical protein
788	 40.97	0	821886..822527	-	213	16802836	-	lmo0794	-	hypothetical protein
789	 39.41	0	822611..823531	-	306	16802837	-	lmo0795	-	hypothetical protein
790	 40.30	0	823638..824168	-	176	16802838	-	lmo0796	-	hypothetical protein
791	 34.85	0	824423..824884	+	153	16802839	-	lmo0797	-	hypothetical protein
792	 40.31	0	824936..826396	-	486	16802840	-	lmo0798	-	hypothetical protein
793	 35.43	0	826752..827513	-	253	16802841	-	lmo0799	-	hypothetical protein
794	 35.04	0	827666..828016	+	116	16802842	-	lmo0800	-	hypothetical protein
795	 31.63	-1	828168..830108	+	646	16802843	-	lmo0801	-	hypothetical protein
796	 33.18	-1	830259..830897	+	212	16802844	-	lmo0802	-	hypothetical protein
797	 38.46	0	831025..833073	+	682	16802845	-	lmo0803	-	hypothetical protein
798	 32.48	-1	833117..833587	-	156	16802846	-	lmo0804	-	hypothetical protein
799	 32.25	-1	833615..834076	-	153	16802847	-	lmo0805	-	hypothetical protein
800	 36.46	0	834287..834829	+	180	16802848	-	lmo0806	-	hypothetical protein
801	 38.26	0	834845..835939	+	364	16802849	-	lmo0807	-	hypothetical protein
802	 36.30	0	835939..836748	+	269	16802850	-	lmo0808	-	hypothetical protein
803	 38.41	0	836745..837551	+	268	16802851	-	lmo0809	-	hypothetical protein
804	 39.20	0	837548..838621	+	357	16802852	-	lmo0810	-	hypothetical protein
805	 38.03	0	838751..839452	+	233	16802853	-	lmo0811	-	hypothetical protein
806	 42.17	+1	839520..840062	+	180	16802854	-	lmo0812	-	hypothetical protein
807	 42.38	+1	840200..841072	+	290	16802855	-	lmo0813	-	hypothetical protein
808	 44.84	+2	841157..842086	+	309	16802856	-	lmo0814	-	hypothetical protein
809	 30.02	-2	842313..842765	+	150	16802857	-	lmo0815	-	hypothetical protein
810	 29.19	-2	842781..843287	+	168	16802858	-	lmo0816	-	hypothetical protein
811	 40.82	0	843311..843724	-	137	16802859	-	lmo0817	-	hypothetical protein
812	 41.58	+1	843949..846579	+	876	16802860	-	lmo0818	-	hypothetical protein
813	 37.22	0	846594..847442	+	282	16802861	-	lmo0819	-	hypothetical protein
814	 38.71	0	847552..848109	+	185	16802862	-	lmo0820	-	hypothetical protein
815	 34.24	-1	848126..848788	+	220	16802863	-	lmo0821	-	hypothetical protein
816	 41.03	0	848804..849193	-	129	16802864	-	lmo0822	-	hypothetical protein
817	 38.67	0	849314..850138	+	274	16802865	-	lmo0823	-	hypothetical protein
818	 41.07	0	850216..851184	+	322	16802866	-	lmo0824	-	hypothetical protein
819	 42.15	+1	851225..852505	+	426	16802867	-	lmo0825	-	hypothetical protein
820	 40.24	0	852704..854338	+	544	16802868	-	lmo0826	-	hypothetical protein
821	 33.99	-1	854443..854748	+	101	16802869	-	lmo0827	-	hypothetical protein
822	 35.84	0	854745..855581	+	278	16802870	-	lmo0828	-	hypothetical protein
823	 42.13	+1	855759..859406	+	1215	16802871	nifJ	lmo0829	-	hypothetical protein
824	 37.05	0	859656..861617	-	653	16802872	fbp	lmo0830	-	hypothetical protein
825	 37.50	0	861731..862642	-	303	16802873	-	lmo0831	-	hypothetical protein
826	 27.02	-2	863322..863606	+	94	16802874	-	lmo0832	-	hypothetical protein
827	 33.00	-1	863798..864688	+	296	16802875	-	lmo0833	-	hypothetical protein
828	 30.67	-2	864824..865537	+	237	16802876	-	lmo0834	-	hypothetical protein
829	 34.73	0	865530..866534	+	334	16802877	-	lmo0835	-	peptidoglycan binding protein
830	 34.30	-1	866577..866990	-	137	16802878	-	lmo0836	-	phosphate-starvation-inducible protein PsiE
831	 36.29	0	869095..870480	+	461	16802879	uhpT	lmo0838	-	sugar phosphate antiporter
832	 41.77	+1	870587..871807	-	406	16802880	-	lmo0839	-	hypothetical protein
833	 33.33	-1	871940..872410	-	156	16802881	-	lmo0840	-	hypothetical protein
834	 42.15	+1	872616..875258	+	880	16802882	-	lmo0841	-	hypothetical protein
835	 36.67	0	875721..881855	+	2044	16802883	-	lmo0842	-	peptidoglycan binding protein
836	 39.15	0	881992..882249	-	85	16802884	-	lmo0843	-	hypothetical protein
837	 38.62	0	882328..882705	+	125	16802885	-	lmo0844	-	hypothetical protein
838	 41.21	0	882962..884065	+	367	16802886	-	lmo0845	-	hypothetical protein
839	 34.24	-1	884170..885270	+	366	16802887	-	lmo0846	-	hypothetical protein
840	 37.01	0	885440..886882	+	480	16802888	-	lmo0847	-	hypothetical protein
841	 38.41	0	886875..887603	+	242	16802889	-	lmo0848	-	hypothetical protein
842	 37.01	0	887652..889502	-	616	16802890	-	lmo0849	-	amidase
843	 33.33	-1	890069..890215	+	48	16802891	-	lmo0850	-	hypothetical protein
844	 35.57	0	890439..891197	+	252	16802892	-	lmo0851	-	hypothetical protein
845	 40.72	0	891277..891831	+	184	16802893	-	lmo0852	-	hypothetical protein
846	 38.01	0	891848..892189	+	113	16802894	-	lmo0853	-	hypothetical protein
847	 38.32	0	892192..892512	+	106	16802895	-	lmo0854	-	hypothetical protein
848	 39.71	0	892662..893774	+	370	16802896	ddl	lmo0855	-	D-alanyl-alanine synthetase A
849	 40.17	0	893838..895211	+	457	16802897	murF	lmo0856	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase
850	 38.80	0	895278..895991	+	237	16802898	-	lmo0857	-	hypothetical protein
851	 37.62	0	896003..897028	-	341	16802899	-	lmo0858	-	hypothetical protein
852	 38.71	0	897273..898592	+	439	16802900	-	lmo0859	-	hypothetical protein
853	 37.77	0	898589..899467	+	292	16802901	-	lmo0860	-	hypothetical protein
854	 39.33	0	899454..900287	+	277	16802902	-	lmo0861	-	hypothetical protein
855	 39.99	0	900303..901835	+	510	16802903	-	lmo0862	-	hypothetical protein
856	 40.66	0	901837..902751	+	304	16802904	-	lmo0863	-	hypothetical protein
857	 38.39	0	902773..903840	+	355	16802905	-	lmo0864	-	hypothetical protein
858	 41.04	0	903837..905510	+	557	16802906	-	lmo0865	-	hypothetical protein
859	 42.48	+1	905962..907524	+	520	16802907	-	lmo0866	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.