IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.00   STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
655	 44.66	+1	700876..701184	-	102	16802703	-	lmo0661	-	hypothetical protein
656	 41.18	0	701247..702062	-	271	16802704	thiD	lmo0662	-	hypothetical protein
657	 38.18	0	702088..702954	-	288	16802705	-	lmo0663	-	hypothetical protein
658	 42.55	+1	703128..703691	+	187	16802706	-	lmo0664	-	hypothetical protein
659	 41.67	+1	703688..703951	+	87	16802707	-	lmo0665	-	hypothetical protein
660	 40.74	0	703961..704338	+	125	16802708	-	lmo0666	-	hypothetical protein
661	 39.32	0	704452..705387	+	311	16802709	-	lmo0667	-	hypothetical protein
662	 39.69	0	705380..706150	+	256	16802710	-	lmo0668	-	hypothetical protein
663	 40.68	0	706408..707292	+	294	16802711	-	lmo0669	-	hypothetical protein
664	 39.55	0	707310..707486	+	58	16802712	-	lmo0670	-	hypothetical protein
665	 34.65	0	707612..708220	+	202	16802713	-	lmo0671	-	hypothetical protein
666	 36.83	0	709134..709562	+	142	16802714	-	lmo0672	-	hypothetical protein
667	 32.38	-1	709601..709810	-	69	16802715	-	lmo0673	-	hypothetical protein
668	 35.07	0	709829..710749	-	306	16802716	-	lmo0674	-	hypothetical protein
669	 32.70	-1	711121..711435	+	104	16802717	-	lmo0675	-	hypothetical protein
670	 38.15	0	711428..712195	+	255	16802718	fliP	lmo0676	-	flagellar biosynthesis protein FliP
671	 41.03	0	712208..712480	+	90	16802719	fliQ	lmo0677	-	flagellar biosynthesis protein FliQ
672	 37.80	0	712483..713244	+	253	16802720	fliR	lmo0678	-	flagellar biosynthesis protein FliR
673	 41.36	0	713260..714306	+	348	16802721	flhB	lmo0679	-	flagellar biosynthesis protein FlhB
674	 41.57	+1	714353..716428	+	691	16802722	flhA	lmo0680	-	flagellar biosynthesis protein FlhA
675	 41.83	+1	716450..717673	+	407	16802723	-	lmo0681	-	flagellar biosynthesis regulator FlhF
676	 41.54	+1	717670..718449	+	259	16802724	flgG	lmo0682	-	flagellar basal body rod protein FlgG
677	 38.78	0	718478..719266	+	262	16802725	-	lmo0683	-	hypothetical protein
678	 37.20	0	719291..719626	+	111	16802726	-	lmo0684	-	hypothetical protein
679	 42.96	+1	719653..720504	+	283	16802727	-	lmo0685	-	flagellar motor protein MotA
680	 42.51	+1	720464..721291	+	275	16802728	motB	lmo0686	-	hypothetical protein
681	 37.13	0	721301..721801	+	166	16802729	-	lmo0687	-	hypothetical protein
682	 38.61	0	721824..723737	+	637	16802730	-	lmo0688	-	hypothetical protein
683	 38.06	0	723750..724658	+	302	16802731	-	lmo0689	-	hypothetical protein
684	 38.19	0	724896..725759	+	287	16802732	flaA	lmo0690	-	flagellin
685	 40.83	0	726034..726393	+	119	16802733	cheY	lmo0691	-	chemotaxis response regulator CheY
686	 40.93	0	726413..728269	+	618	16802734	cheA	lmo0692	-	two-component sensor histidine kinase CheA
687	 42.00	+1	728282..728581	+	99	16802735	-	lmo0693	-	flagellar motor switch protein
688	 37.71	0	728600..729010	+	136	16802736	-	lmo0694	-	hypothetical protein
689	 43.08	+1	729026..730072	+	348	16802737	-	lmo0695	-	hypothetical protein
690	 39.48	0	730074..730496	+	140	16802738	flgD	lmo0696	-	flagellar basal body rod modification protein
691	 41.99	+1	730516..731751	+	411	16802739	flgE	lmo0697	-	flagellar hook protein FlgE
692	 40.08	0	731765..732001	+	78	16802740	-	lmo0698	-	flagellar motor switch protein
693	 40.38	0	732022..733014	+	330	16802741	fliM	lmo0699	-	flagellar motor switch protein FliM
694	 40.83	0	733017..734564	+	515	16802742	-	lmo0700	-	flagellar motor switch protein
695	 39.39	0	734570..735973	+	467	16802743	-	lmo0701	-	hypothetical protein
696	 35.82	0	735996..737162	+	388	16802744	-	lmo0702	-	hypothetical protein
697	 32.69	-1	737269..737733	+	154	16802745	-	lmo0703	-	hypothetical protein
698	 35.43	0	737743..738171	+	142	16802746	-	lmo0704	-	hypothetical protein
699	 42.14	+1	738191..739711	+	506	16802747	flgK	lmo0705	-	flagellar hook-associated protein FlgK
700	 38.24	0	739723..740598	+	291	16802748	flgL	lmo0706	-	flagellar hook-associated protein FlgL
701	 39.38	0	740610..741899	+	429	16802749	fliD	lmo0707	-	flagellar capping protein
702	 33.33	-1	741918..742304	+	128	16802750	-	lmo0708	-	hypothetical protein
703	 34.04	-1	742276..742557	+	93	16802751	-	lmo0709	-	hypothetical protein
704	 41.54	+1	742578..742979	+	133	16802752	flgB	lmo0710	-	flagellar basal body rod protein FlgB
705	 42.58	+1	742991..743401	+	136	16802753	flgC	lmo0711	-	flagellar basal body rod protein FlgC
706	 40.40	0	743418..743714	+	98	16802754	fliE	lmo0712	-	flagellar hook-basal body protein FliE
707	 41.86	+1	743782..745434	+	550	16802755	fliF	lmo0713	-	flagellar MS-ring protein
708	 40.92	0	745437..746543	+	368	16802756	fliG	lmo0714	-	flagellar motor switch protein G
709	 38.38	0	746530..747222	+	230	16802757	fliH	lmo0715	-	flagellar assembly protein H
710	 43.01	+1	747219..748520	+	433	16802758	fliI	lmo0716	-	flagellum-specific ATP synthase
711	 42.45	+1	748537..749205	+	222	16802759	-	lmo0717	-	hypothetical protein
712	 37.67	0	749219..749863	+	214	16802760	-	lmo0718	-	hypothetical protein
713	 39.14	0	749985..750311	+	108	16802761	-	lmo0719	-	hypothetical protein
714	 38.58	0	750311..750634	+	107	16802762	-	lmo0720	-	hypothetical protein
715	 38.12	0	750680..751327	-	215	16802763	-	lmo0721	-	putative fibronectin-binding protein
716	 42.69	+1	751598..753328	+	576	16802764	-	lmo0722	-	pyruvate oxidase
717	 40.48	0	753490..755295	+	601	16802765	-	lmo0723	-	hypothetical protein
718	 39.51	0	755308..756036	+	242	16802766	-	lmo0724	-	hypothetical protein
719	 38.50	0	756079..756291	-	70	16802767	-	lmo0725	-	peptidoglycan binding protein
720	 46.53	+2	756494..756637	+	47	16802768	-	lmo0726	-	hypothetical protein
721	 40.75	0	756738..758543	+	601	16802769	-	lmo0727	-	D-fructose-6-phosphate amidotransferase
722	 41.30	0	758656..759396	+	246	16802770	-	lmo0728	-	hypothetical protein
723	 40.00	0	759479..759958	+	159	16802771	-	lmo0729	-	hypothetical protein
724	 34.51	-1	759972..760310	+	112	16802772	-	lmo0730	-	hypothetical protein
725	 39.51	0	760455..760859	+	134	16802773	-	lmo0731	-	hypothetical protein
726	 37.87	0	761552..763468	+	638	16802774	-	lmo0732	-	peptidoglycan binding protein
727	 37.06	0	763798..764307	+	169	16802775	-	lmo0733	-	hypothetical protein
728	 34.33	-1	764465..765469	-	334	16802776	-	lmo0734	-	hypothetical protein
729	 35.86	0	765683..766354	+	223	16802777	-	lmo0735	-	hypothetical protein
730	 37.14	0	766351..766797	+	148	16802778	-	lmo0736	-	ribose-5-phosphate isomerase B
731	 38.05	0	766810..767742	+	310	16802779	-	lmo0737	-	hypothetical protein
732	 39.27	0	767766..769619	+	617	16802780	-	lmo0738	-	hypothetical protein
733	 35.66	0	769639..771012	+	457	16802781	-	lmo0739	-	hypothetical protein
734	 33.79	-1	771026..771685	-	219	16802782	-	lmo0740	-	hypothetical protein
735	 34.13	-1	771949..772326	+	125	16802783	-	lmo0741	-	hypothetical protein
736	 34.35	-1	772310..772999	+	229	16802784	-	lmo0742	-	hypothetical protein
737	 34.47	-1	772996..773700	+	234	16802785	-	lmo0743	-	hypothetical protein
738	 35.18	0	773715..775715	+	666	16802786	-	lmo0744	-	hypothetical protein
739	 36.31	0	775744..776247	+	167	16802787	-	lmo0745	-	hypothetical protein
740	 29.67	-2	776398..776697	-	99	16802788	-	lmo0746	-	hypothetical protein
741	 30.12	-2	776761..777102	+	113	16802789	-	lmo0747	-	hypothetical protein
742	 31.94	-1	777209..777496	+	95	16802790	-	lmo0748	-	hypothetical protein
743	 35.75	0	777493..777699	+	68	16802791	-	lmo0749	-	hypothetical protein
744	 33.14	-1	777692..778207	+	171	16802792	-	lmo0750	-	hypothetical protein
745	 35.69	0	778262..778558	+	98	16802793	-	lmo0751	-	hypothetical protein
746	 39.78	0	778654..779490	+	278	16802794	-	lmo0752	-	hypothetical protein
747	 33.48	-1	779616..780296	+	226	16802795	-	lmo0753	-	hypothetical protein
748	 39.54	0	780377..780988	+	203	16802796	-	lmo0754	-	hypothetical protein
749	 40.63	0	781103..781924	+	273	16802797	-	lmo0755	-	hypothetical protein
750	 42.05	+1	781896..782801	+	301	16802798	-	lmo0756	-	hypothetical protein
751	 42.92	+1	782794..783774	+	326	16802799	-	lmo0757	-	hypothetical protein
752	 41.89	+1	783901..784788	+	295	16802800	-	lmo0758	-	hypothetical protein
753	 40.52	0	784788..785747	+	319	16802801	-	lmo0759	-	hypothetical protein
754	 40.72	0	785754..786362	+	202	16802802	-	lmo0760	-	hypothetical protein
38.00	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.