IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.00   STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
623	 35.23	0	669423..669950	+	175	16802671	-	lmo0629	-	hypothetical protein
624	 34.17	-1	670309..672339	+	676	16802672	-	lmo0630	-	hypothetical protein
625	 34.88	0	672341..672793	+	150	16802673	-	lmo0631	-	hypothetical protein
626	 42.18	+1	672794..673855	+	353	16802674	-	lmo0632	-	putative fructose-like permease EIIC subunit 2
627	 37.22	0	673870..674178	+	102	16802675	-	lmo0633	-	putative fructose-like phosphotransferase EIIB subunit 2
628	 37.51	0	674205..675473	+	422	16802676	-	lmo0634	-	hypothetical protein
629	 34.18	-1	675563..676267	+	234	16802677	-	lmo0635	-	hypothetical protein
630	 38.85	0	676372..676788	+	138	16802678	-	lmo0636	-	hypothetical protein
631	 42.09	+1	676802..677395	+	197	16802679	-	lmo0637	-	hypothetical protein
632	 34.29	-1	678494..679123	+	209	16802680	-	lmo0638	-	hypothetical protein
633	 36.14	0	679763..680296	+	177	16802681	-	lmo0639	-	hypothetical protein
634	 39.00	0	680360..681277	+	305	16802682	-	lmo0640	-	hypothetical protein
635	 41.47	+1	681543..683423	+	626	16802683	-	lmo0641	-	hypothetical protein
636	 37.31	0	683519..684247	+	242	16802684	-	lmo0642	-	hypothetical protein
637	 37.63	0	684390..685040	+	216	16802685	-	lmo0643	-	hypothetical protein
638	 37.29	0	685083..686903	-	606	16802686	-	lmo0644	-	hypothetical protein
639	 39.51	0	687138..688529	+	463	16802687	-	lmo0645	-	hypothetical protein
640	 41.07	0	688619..689458	+	279	16802688	-	lmo0646	-	hypothetical protein
641	 34.04	-1	689541..689825	-	94	16802689	-	lmo0647	-	hypothetical protein
642	 33.02	-1	689923..690873	+	316	16802690	-	lmo0648	-	hypothetical protein
643	 33.80	-1	690897..691538	+	213	16802691	-	lmo0649	-	hypothetical protein
644	 38.54	0	691581..694271	+	896	16802692	-	lmo0650	-	hypothetical protein
645	 35.49	0	694317..694964	+	215	16802693	-	lmo0651	-	hypothetical protein
646	 39.29	0	694973..695509	-	178	16802694	-	lmo0652	-	hypothetical protein
647	 40.50	0	695496..696416	-	306	16802695	-	lmo0653	-	hypothetical protein
648	 37.62	0	696606..696815	+	69	16802696	-	lmo0654	-	hypothetical protein
649	 38.84	0	696883..697590	+	235	16802697	-	lmo0655	-	hypothetical protein
650	 36.17	0	697634..698197	-	187	16802698	-	lmo0656	-	hypothetical protein
651	 39.09	0	698317..698733	+	138	16802699	-	lmo0657	-	hypothetical protein
652	 37.89	0	698785..699420	+	211	16802700	-	lmo0658	-	hypothetical protein
653	 30.55	-2	699410..700306	-	298	16802701	-	lmo0659	-	hypothetical protein
654	 33.68	-1	700537..700821	+	94	16802702	-	lmo0660	-	hypothetical protein
655	 44.66	+1	700876..701184	-	102	16802703	-	lmo0661	-	hypothetical protein
656	 41.18	0	701247..702062	-	271	16802704	thiD	lmo0662	-	hypothetical protein
657	 38.18	0	702088..702954	-	288	16802705	-	lmo0663	-	hypothetical protein
658	 42.55	+1	703128..703691	+	187	16802706	-	lmo0664	-	hypothetical protein
659	 41.67	+1	703688..703951	+	87	16802707	-	lmo0665	-	hypothetical protein
660	 40.74	0	703961..704338	+	125	16802708	-	lmo0666	-	hypothetical protein
661	 39.32	0	704452..705387	+	311	16802709	-	lmo0667	-	hypothetical protein
662	 39.69	0	705380..706150	+	256	16802710	-	lmo0668	-	hypothetical protein
663	 40.68	0	706408..707292	+	294	16802711	-	lmo0669	-	hypothetical protein
664	 39.55	0	707310..707486	+	58	16802712	-	lmo0670	-	hypothetical protein
665	 34.65	0	707612..708220	+	202	16802713	-	lmo0671	-	hypothetical protein
666	 36.83	0	709134..709562	+	142	16802714	-	lmo0672	-	hypothetical protein
667	 32.38	-1	709601..709810	-	69	16802715	-	lmo0673	-	hypothetical protein
668	 35.07	0	709829..710749	-	306	16802716	-	lmo0674	-	hypothetical protein
669	 32.70	-1	711121..711435	+	104	16802717	-	lmo0675	-	hypothetical protein
670	 38.15	0	711428..712195	+	255	16802718	fliP	lmo0676	-	flagellar biosynthesis protein FliP
671	 41.03	0	712208..712480	+	90	16802719	fliQ	lmo0677	-	flagellar biosynthesis protein FliQ
672	 37.80	0	712483..713244	+	253	16802720	fliR	lmo0678	-	flagellar biosynthesis protein FliR
673	 41.36	0	713260..714306	+	348	16802721	flhB	lmo0679	-	flagellar biosynthesis protein FlhB
674	 41.57	+1	714353..716428	+	691	16802722	flhA	lmo0680	-	flagellar biosynthesis protein FlhA
675	 41.83	+1	716450..717673	+	407	16802723	-	lmo0681	-	flagellar biosynthesis regulator FlhF
676	 41.54	+1	717670..718449	+	259	16802724	flgG	lmo0682	-	flagellar basal body rod protein FlgG
677	 38.78	0	718478..719266	+	262	16802725	-	lmo0683	-	hypothetical protein
678	 37.20	0	719291..719626	+	111	16802726	-	lmo0684	-	hypothetical protein
679	 42.96	+1	719653..720504	+	283	16802727	-	lmo0685	-	flagellar motor protein MotA
680	 42.51	+1	720464..721291	+	275	16802728	motB	lmo0686	-	hypothetical protein
681	 37.13	0	721301..721801	+	166	16802729	-	lmo0687	-	hypothetical protein
682	 38.61	0	721824..723737	+	637	16802730	-	lmo0688	-	hypothetical protein
683	 38.06	0	723750..724658	+	302	16802731	-	lmo0689	-	hypothetical protein
684	 38.19	0	724896..725759	+	287	16802732	flaA	lmo0690	-	flagellin
685	 40.83	0	726034..726393	+	119	16802733	cheY	lmo0691	-	chemotaxis response regulator CheY
686	 40.93	0	726413..728269	+	618	16802734	cheA	lmo0692	-	two-component sensor histidine kinase CheA
687	 42.00	+1	728282..728581	+	99	16802735	-	lmo0693	-	flagellar motor switch protein
688	 37.71	0	728600..729010	+	136	16802736	-	lmo0694	-	hypothetical protein
689	 43.08	+1	729026..730072	+	348	16802737	-	lmo0695	-	hypothetical protein
690	 39.48	0	730074..730496	+	140	16802738	flgD	lmo0696	-	flagellar basal body rod modification protein
691	 41.99	+1	730516..731751	+	411	16802739	flgE	lmo0697	-	flagellar hook protein FlgE
692	 40.08	0	731765..732001	+	78	16802740	-	lmo0698	-	flagellar motor switch protein
693	 40.38	0	732022..733014	+	330	16802741	fliM	lmo0699	-	flagellar motor switch protein FliM
694	 40.83	0	733017..734564	+	515	16802742	-	lmo0700	-	flagellar motor switch protein
695	 39.39	0	734570..735973	+	467	16802743	-	lmo0701	-	hypothetical protein
696	 35.82	0	735996..737162	+	388	16802744	-	lmo0702	-	hypothetical protein
697	 32.69	-1	737269..737733	+	154	16802745	-	lmo0703	-	hypothetical protein
698	 35.43	0	737743..738171	+	142	16802746	-	lmo0704	-	hypothetical protein
699	 42.14	+1	738191..739711	+	506	16802747	flgK	lmo0705	-	flagellar hook-associated protein FlgK
700	 38.24	0	739723..740598	+	291	16802748	flgL	lmo0706	-	flagellar hook-associated protein FlgL
701	 39.38	0	740610..741899	+	429	16802749	fliD	lmo0707	-	flagellar capping protein
702	 33.33	-1	741918..742304	+	128	16802750	-	lmo0708	-	hypothetical protein
703	 34.04	-1	742276..742557	+	93	16802751	-	lmo0709	-	hypothetical protein
704	 41.54	+1	742578..742979	+	133	16802752	flgB	lmo0710	-	flagellar basal body rod protein FlgB
705	 42.58	+1	742991..743401	+	136	16802753	flgC	lmo0711	-	flagellar basal body rod protein FlgC
706	 40.40	0	743418..743714	+	98	16802754	fliE	lmo0712	-	flagellar hook-basal body protein FliE
707	 41.86	+1	743782..745434	+	550	16802755	fliF	lmo0713	-	flagellar MS-ring protein
708	 40.92	0	745437..746543	+	368	16802756	fliG	lmo0714	-	flagellar motor switch protein G
709	 38.38	0	746530..747222	+	230	16802757	fliH	lmo0715	-	flagellar assembly protein H
710	 43.01	+1	747219..748520	+	433	16802758	fliI	lmo0716	-	flagellum-specific ATP synthase
711	 42.45	+1	748537..749205	+	222	16802759	-	lmo0717	-	hypothetical protein
712	 37.67	0	749219..749863	+	214	16802760	-	lmo0718	-	hypothetical protein
713	 39.14	0	749985..750311	+	108	16802761	-	lmo0719	-	hypothetical protein
714	 38.58	0	750311..750634	+	107	16802762	-	lmo0720	-	hypothetical protein
715	 38.12	0	750680..751327	-	215	16802763	-	lmo0721	-	putative fibronectin-binding protein
716	 42.69	+1	751598..753328	+	576	16802764	-	lmo0722	-	pyruvate oxidase
717	 40.48	0	753490..755295	+	601	16802765	-	lmo0723	-	hypothetical protein
718	 39.51	0	755308..756036	+	242	16802766	-	lmo0724	-	hypothetical protein
719	 38.50	0	756079..756291	-	70	16802767	-	lmo0725	-	peptidoglycan binding protein
720	 46.53	+2	756494..756637	+	47	16802768	-	lmo0726	-	hypothetical protein
721	 40.75	0	756738..758543	+	601	16802769	-	lmo0727	-	D-fructose-6-phosphate amidotransferase
722	 41.30	0	758656..759396	+	246	16802770	-	lmo0728	-	hypothetical protein
38.00	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.