IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
543	 31.08	-2	586329..586994	+	221	16802591	-	lmo0548	-	hypothetical protein
544	 36.05	0	587012..589033	+	673	16802592	-	lmo0549	-	hypothetical protein
545	 40.07	0	589066..589362	+	98	16802593	-	lmo0550	-	pepdidoglycan bound protein
546	 43.42	+1	589406..590248	+	280	16802594	-	lmo0551	-	hypothetical protein
547	 36.63	0	590324..591355	+	343	16802595	-	lmo0552	-	hypothetical protein
548	 35.85	0	591412..592047	-	211	16802596	-	lmo0553	-	hypothetical protein
549	 38.92	0	592257..593438	+	393	16802597	-	lmo0554	-	hypothetical protein
550	 40.77	0	593528..595006	+	492	16802598	-	lmo0555	-	hypothetical protein
551	 38.84	0	595135..595842	+	235	16802599	-	lmo0556	-	hypothetical protein
552	 38.07	0	595843..596538	+	231	16802600	-	lmo0557	-	hypothetical protein
553	 39.58	0	596580..597620	-	346	16802601	-	lmo0558	-	hypothetical protein
554	 30.91	-2	598020..598925	+	301	16802602	-	lmo0559	-	hypothetical protein
555	 43.28	+1	598968..600344	-	458	16802603	-	lmo0560	-	glutamate dehydrogenase
556	 37.50	0	600837..601148	-	103	16802604	hisE	lmo0561	-	phosphoribosyl-ATP pyrophosphatase
557	 40.25	0	601149..601466	-	105	16802605	-	lmo0562	-	phosphoribosyl-AMP cyclohydrolase
558	 45.50	+2	601463..602218	-	251	16802606	hisF	lmo0563	-	imidazole glycerol phosphate synthase subunit HisF
559	 42.74	+1	602208..602930	-	240	16802607	hisA	lmo0564	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
560	 40.67	0	602909..603535	-	208	16802608	hisH	lmo0565	-	imidazole glycerol phosphate synthase subunit HisH
561	 41.88	+1	603536..604120	-	194	16802609	hisB	lmo0566	-	imidazoleglycerol-phosphate dehydratase
562	 42.60	+1	604121..605404	-	427	16802610	hisD	lmo0567	-	histidinol dehydrogenase
563	 38.16	0	605401..606042	-	213	16802611	hisG	lmo0568	-	ATP phosphoribosyltransferase catalytic subunit
564	 40.19	0	606039..607220	-	393	16802612	hisZ	lmo0569	-	ATP phosphoribosyltransferase regulatory subunit
565	 40.34	0	607372..608199	+	275	16802613	hisJ	lmo0570	-	histidinol-phosphatase
566	 44.44	+1	608184..608480	-	98	16802614	-	lmo0571	-	hypothetical protein
567	 35.85	0	608557..609588	+	343	16802615	-	lmo0572	-	hypothetical protein
568	 41.20	0	609629..610924	-	431	16802616	-	lmo0573	-	hypothetical protein
569	 40.14	0	611240..612634	+	464	16802617	-	lmo0574	-	hypothetical protein
570	 39.92	0	612678..613406	+	242	16802618	-	lmo0575	-	hypothetical protein
571	 34.43	-1	613836..615299	+	487	16802619	-	lmo0576	-	hypothetical protein
572	 44.23	+1	615353..615811	-	152	16802620	-	lmo0577	-	hypothetical protein
573	 39.84	0	615825..616577	-	250	16802621	-	lmo0578	-	hypothetical protein
574	 38.57	0	616742..616951	+	69	16802622	-	lmo0579	-	hypothetical protein
575	 39.12	0	616973..617629	+	218	16802623	-	lmo0580	-	hypothetical protein
576	 37.38	0	617660..618844	-	394	16802624	-	lmo0581	-	hypothetical protein
577	 38.85	0	618932..620380	-	482	16802625	iap	lmo0582	-	P60 extracellular protein, invasion associated protein Iap
578	 39.55	0	620805..623135	+	776	16802626	-	lmo0583	-	preprotein translocase subunit SecA
579	 34.70	0	623251..624423	+	390	16802627	-	lmo0584	-	hypothetical protein
580	 43.42	+1	624682..625395	+	237	16802628	-	lmo0585	-	putative secreted protein
581	 35.19	0	625463..626488	+	341	16802629	-	lmo0586	-	hypothetical protein
582	 40.27	0	626506..628971	+	821	16802630	-	lmo0587	-	putative secreted protein
583	 39.10	0	629088..630491	+	467	16802631	-	lmo0588	-	hypothetical protein
584	 37.44	0	630629..631042	+	137	16802632	-	lmo0589	-	hypothetical protein
585	 39.84	0	631045..632811	+	588	16802633	-	lmo0590	-	hypothetical protein
586	 36.06	0	632811..633581	+	256	16802634	-	lmo0591	-	hypothetical protein
587	 36.46	0	633709..634251	+	180	16802635	-	lmo0592	-	hypothetical protein
588	 36.45	0	634479..635279	+	266	16802636	-	lmo0593	-	hypothetical protein
589	 41.82	+1	635317..636423	-	368	16802637	metX	lmo0594	-	homoserine O-acetyltransferase
590	 40.92	0	636440..637717	-	425	16802638	-	lmo0595	-	hypothetical protein
591	 36.55	0	638165..638692	+	175	16802639	-	lmo0596	-	hypothetical protein
592	 36.18	0	638781..639482	-	233	16802640	-	lmo0597	-	hypothetical protein
593	 32.43	-1	640300..640632	+	110	16802641	-	lmo0599	-	hypothetical protein
594	 37.23	0	640625..641215	+	196	16802642	-	lmo0600	-	hypothetical protein
595	 35.15	0	641208..642308	+	366	16802643	-	lmo0601	-	hypothetical protein
596	 38.72	0	642414..642914	+	166	16802644	-	lmo0602	-	hypothetical protein
597	 39.28	0	642962..643348	-	128	16802645	-	lmo0603	-	hypothetical protein
598	 34.49	-1	643400..643744	-	114	16802646	-	lmo0604	-	hypothetical protein
599	 40.72	0	643891..645231	-	446	16802647	-	lmo0605	-	hypothetical protein
600	 36.80	0	645397..645858	+	153	16802648	-	lmo0606	-	hypothetical protein
601	 39.35	0	645878..647590	+	570	16802649	-	lmo0607	-	hypothetical protein
602	 39.22	0	647587..649404	+	605	16802650	-	lmo0608	-	hypothetical protein
603	 38.33	0	649520..649819	+	99	16802651	-	lmo0609	-	hypothetical protein
604	 36.78	0	649864..651633	-	589	16802652	-	lmo0610	-	hypothetical protein
605	 37.96	0	651794..652420	-	208	16802653	acpD	lmo0611	-	azoreductase
606	 37.06	0	652589..653044	+	151	16802654	-	lmo0612	-	hypothetical protein
607	 39.81	0	653041..653982	+	313	16802655	-	lmo0613	-	hypothetical protein
608	 33.15	-1	654078..654611	+	177	16802656	-	lmo0614	-	hypothetical protein
609	 33.74	-1	654608..654850	-	80	16802657	-	lmo0615	-	hypothetical protein
610	 33.90	-1	654957..656708	+	583	16802658	-	lmo0616	-	glycerophosphoryl diester phosphodiesterase
611	 32.32	-1	656749..657243	-	164	16802659	-	lmo0617	-	hypothetical protein
612	 37.01	0	657323..658465	-	380	16802660	-	lmo0618	-	hypothetical protein
613	 35.75	0	658572..659027	+	151	16802661	-	lmo0619	-	hypothetical protein
614	 35.11	0	659083..659475	+	130	16802662	-	lmo0620	-	hypothetical protein
615	 35.90	0	659572..660312	+	246	16802663	-	lmo0621	-	hypothetical protein
616	 28.67	-2	660398..660676	+	92	16802664	-	lmo0622	-	hypothetical protein
617	 37.08	0	660692..660958	+	88	16802665	-	lmo0623	-	hypothetical protein
618	 35.59	0	660996..661439	-	147	16802666	-	lmo0624	-	hypothetical protein
619	 38.18	0	661470..662171	-	233	16802667	-	lmo0625	-	hypothetical protein
620	 35.54	0	662257..663936	-	559	16802668	-	lmo0626	-	hypothetical protein
621	 36.96	0	664242..668990	+	1582	16802669	-	lmo0627	-	pepdidoglycan bound protein
622	 43.12	+1	669086..669361	+	91	16802670	-	lmo0628	-	hypothetical protein
623	 35.23	0	669423..669950	+	175	16802671	-	lmo0629	-	hypothetical protein
624	 34.17	-1	670309..672339	+	676	16802672	-	lmo0630	-	hypothetical protein
625	 34.88	0	672341..672793	+	150	16802673	-	lmo0631	-	hypothetical protein
626	 42.18	+1	672794..673855	+	353	16802674	-	lmo0632	-	putative fructose-like permease EIIC subunit 2
627	 37.22	0	673870..674178	+	102	16802675	-	lmo0633	-	putative fructose-like phosphotransferase EIIB subunit 2
628	 37.51	0	674205..675473	+	422	16802676	-	lmo0634	-	hypothetical protein
629	 34.18	-1	675563..676267	+	234	16802677	-	lmo0635	-	hypothetical protein
630	 38.85	0	676372..676788	+	138	16802678	-	lmo0636	-	hypothetical protein
631	 42.09	+1	676802..677395	+	197	16802679	-	lmo0637	-	hypothetical protein
632	 34.29	-1	678494..679123	+	209	16802680	-	lmo0638	-	hypothetical protein
633	 36.14	0	679763..680296	+	177	16802681	-	lmo0639	-	hypothetical protein
634	 39.00	0	680360..681277	+	305	16802682	-	lmo0640	-	hypothetical protein
635	 41.47	+1	681543..683423	+	626	16802683	-	lmo0641	-	hypothetical protein
636	 37.31	0	683519..684247	+	242	16802684	-	lmo0642	-	hypothetical protein
637	 37.63	0	684390..685040	+	216	16802685	-	lmo0643	-	hypothetical protein
638	 37.29	0	685083..686903	-	606	16802686	-	lmo0644	-	hypothetical protein
639	 39.51	0	687138..688529	+	463	16802687	-	lmo0645	-	hypothetical protein
640	 41.07	0	688619..689458	+	279	16802688	-	lmo0646	-	hypothetical protein
641	 34.04	-1	689541..689825	-	94	16802689	-	lmo0647	-	hypothetical protein
642	 33.02	-1	689923..690873	+	316	16802690	-	lmo0648	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.