IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
471	 41.00	0	512291..513268	-	325	16802519	-	lmo0476	-	hypothetical protein
472	 33.60	-1	514004..514381	+	125	16802520	-	lmo0477	-	putative secreted protein
473	 31.75	-1	514681..515058	+	125	16802521	-	lmo0478	-	putative secreted protein
474	 34.72	0	515391..515750	+	119	16802522	-	lmo0479	-	putative secreted protein
475	 38.50	0	516076..516636	+	186	16802523	-	lmo0480	-	hypothetical protein
476	 40.39	0	516746..518446	+	566	16802524	-	lmo0481	-	hypothetical protein
477	 41.30	0	518597..519700	+	367	16802525	-	lmo0482	-	hypothetical protein
478	 42.92	+1	519789..520268	+	159	16802526	-	lmo0483	-	hypothetical protein
479	 42.90	+1	520426..520791	+	121	16802527	-	lmo0484	-	heme-degrading monooxygenase IsdG
480	 41.67	+1	520961..521536	+	191	16802528	-	lmo0485	-	hypothetical protein
481	 46.20	+2	521601..521771	+	56	16802529	rpmF	lmo0486	-	50S ribosomal protein L32
482	 41.29	0	521863..522591	+	242	16802530	-	lmo0487	-	hypothetical protein
483	 38.03	0	522628..523521	-	297	16802531	-	lmo0488	-	hypothetical protein
484	 41.20	0	523719..525713	+	664	16802532	-	lmo0489	-	hypothetical protein
485	 39.73	0	525813..526688	+	291	16802533	aroE	lmo0490	-	shikimate 5-dehydrogenase
486	 40.97	0	526754..527512	+	252	16802534	aroD	lmo0491	-	3-dehydroquinate dehydratase
487	 32.45	-1	527580..528488	-	302	16802535	-	lmo0492	-	hypothetical protein
488	 38.56	0	528563..530323	-	586	16802536	-	lmo0493	-	hypothetical protein
489	 43.60	+1	530515..531108	+	197	16802537	-	lmo0494	-	hypothetical protein
490	 40.42	0	531294..532253	+	319	16802538	-	lmo0495	-	hypothetical protein
491	 31.11	-2	532328..532552	+	74	16802539	-	lmo0496	-	hypothetical protein
492	 32.14	-1	532603..534111	-	502	16802540	-	lmo0497	-	hypothetical protein
493	 43.56	+1	534307..534756	+	149	16802541	-	lmo0498	-	hypothetical protein
494	 39.76	0	534753..535421	+	222	16802542	-	lmo0499	-	hypothetical protein
495	 37.94	0	535428..536078	+	216	16802543	-	lmo0500	-	hypothetical protein
496	 35.76	0	536187..538247	+	686	16802544	-	lmo0501	-	hypothetical protein
497	 38.97	0	538251..538853	+	200	16802545	-	lmo0502	-	hypothetical protein
498	 38.25	0	538881..539348	+	155	16802546	-	lmo0503	-	hypothetical protein
499	 36.34	0	539365..539763	+	132	16802547	-	lmo0504	-	hypothetical protein
500	 38.10	0	539774..540424	+	216	16802548	-	lmo0505	-	hypothetical protein
501	 41.36	0	540421..541467	+	348	16802549	-	lmo0506	-	hypothetical protein
502	 36.39	0	541483..541776	+	97	16802550	-	lmo0507	-	hypothetical protein
503	 39.78	0	541791..543062	+	423	16802551	-	lmo0508	-	hypothetical protein
504	 42.74	+1	543202..544137	+	311	16802552	prs	lmo0509	-	hypothetical protein
505	 32.12	-1	544923..545501	+	192	16802553	-	lmo0510	-	hypothetical protein
506	 37.59	0	545609..546289	+	226	16802554	-	lmo0511	-	hypothetical protein
507	 42.78	+1	546314..546673	-	119	16802555	-	lmo0512	-	hypothetical protein
508	 41.39	+1	546680..547138	-	152	16802556	-	lmo0513	-	hypothetical protein
509	 37.07	0	547520..549337	+	605	16802557	-	lmo0514	-	hypothetical protein
510	 37.73	0	549438..549869	+	143	16802558	-	lmo0515	-	hypothetical protein
511	 37.74	0	549916..551346	-	476	16802559	-	lmo0516	-	hypothetical protein
512	 37.75	0	551467..552282	-	271	16802560	-	lmo0517	-	hypothetical protein
513	 44.17	+1	552563..552931	-	122	16802561	-	lmo0518	-	hypothetical protein
514	 41.74	+1	553078..554493	+	471	16802562	-	lmo0519	-	hypothetical protein
515	 42.19	+1	554624..555628	+	334	16802563	-	lmo0520	-	hypothetical protein
516	 41.69	+1	555660..556976	-	438	16802564	-	lmo0521	-	hypothetical protein
517	 37.98	0	557178..557930	+	250	16802565	-	lmo0522	-	hypothetical protein
518	 32.88	-1	558037..558480	+	147	16802566	-	lmo0523	-	hypothetical protein
519	 39.89	0	558526..560187	-	553	16802567	-	lmo0524	-	hypothetical protein
520	 38.06	0	560443..561774	+	443	16802568	-	lmo0525	-	hypothetical protein
521	 35.63	0	561819..562559	-	246	16802569	-	lmo0526	-	hypothetical protein
522	 36.65	0	562789..564264	+	491	16802570	-	lmo0527	-	transmembrane protein
523	 37.68	0	564257..565753	+	498	16802571	-	lmo0528	-	hypothetical protein
524	 40.53	0	565764..567014	+	416	16802572	-	lmo0529	-	hypothetical protein
525	 38.74	0	567030..569081	+	683	16802573	-	lmo0530	-	hypothetical protein
526	 36.49	0	569094..569948	+	284	16802574	-	lmo0531	-	hypothetical protein
527	 40.31	0	570008..570838	+	276	16802575	-	lmo0532	-	hypothetical protein
528	 36.67	0	570916..571185	+	89	16802576	-	lmo0533	-	hypothetical protein
529	 45.80	+2	571204..572559	+	451	16802577	-	lmo0534	-	hypothetical protein
530	 41.18	0	572600..573568	-	322	16802578	-	lmo0535	-	hypothetical protein
531	 40.59	0	573740..575062	+	440	16802579	-	lmo0536	-	hypothetical protein
532	 43.08	+1	575166..576437	+	423	16802580	-	lmo0537	-	allantoate amidohydrolase
533	 46.70	+2	576403..577584	+	393	16802581	-	lmo0538	-	hypothetical protein
534	 36.87	0	577632..578648	-	338	16802582	-	lmo0539	-	tagatose 1,6-diphosphate aldolase
535	 34.67	0	578886..580079	+	397	16802583	-	lmo0540	-	hypothetical protein
536	 38.44	0	580119..581039	-	306	16802584	-	lmo0541	-	hypothetical protein
537	 37.32	0	581150..581500	-	116	16802585	-	lmo0542	-	hypothetical protein
538	 41.03	0	581519..582505	-	328	16802586	-	lmo0543	-	hypothetical protein
539	 38.70	0	582526..583047	-	173	16802587	-	lmo0544	-	hypothetical protein
540	 33.60	-1	583072..583452	-	126	16802588	-	lmo0545	-	hypothetical protein
541	 40.69	0	583507..584757	-	416	16802589	-	lmo0546	-	hypothetical protein
542	 37.34	0	585015..585962	-	315	16802590	-	lmo0547	-	hypothetical protein
543	 31.08	-2	586329..586994	+	221	16802591	-	lmo0548	-	hypothetical protein
544	 36.05	0	587012..589033	+	673	16802592	-	lmo0549	-	hypothetical protein
545	 40.07	0	589066..589362	+	98	16802593	-	lmo0550	-	pepdidoglycan bound protein
546	 43.42	+1	589406..590248	+	280	16802594	-	lmo0551	-	hypothetical protein
547	 36.63	0	590324..591355	+	343	16802595	-	lmo0552	-	hypothetical protein
548	 35.85	0	591412..592047	-	211	16802596	-	lmo0553	-	hypothetical protein
549	 38.92	0	592257..593438	+	393	16802597	-	lmo0554	-	hypothetical protein
550	 40.77	0	593528..595006	+	492	16802598	-	lmo0555	-	hypothetical protein
551	 38.84	0	595135..595842	+	235	16802599	-	lmo0556	-	hypothetical protein
552	 38.07	0	595843..596538	+	231	16802600	-	lmo0557	-	hypothetical protein
553	 39.58	0	596580..597620	-	346	16802601	-	lmo0558	-	hypothetical protein
554	 30.91	-2	598020..598925	+	301	16802602	-	lmo0559	-	hypothetical protein
555	 43.28	+1	598968..600344	-	458	16802603	-	lmo0560	-	glutamate dehydrogenase
556	 37.50	0	600837..601148	-	103	16802604	hisE	lmo0561	-	phosphoribosyl-ATP pyrophosphatase
557	 40.25	0	601149..601466	-	105	16802605	-	lmo0562	-	phosphoribosyl-AMP cyclohydrolase
558	 45.50	+2	601463..602218	-	251	16802606	hisF	lmo0563	-	imidazole glycerol phosphate synthase subunit HisF
559	 42.74	+1	602208..602930	-	240	16802607	hisA	lmo0564	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
560	 40.67	0	602909..603535	-	208	16802608	hisH	lmo0565	-	imidazole glycerol phosphate synthase subunit HisH
561	 41.88	+1	603536..604120	-	194	16802609	hisB	lmo0566	-	imidazoleglycerol-phosphate dehydratase
562	 42.60	+1	604121..605404	-	427	16802610	hisD	lmo0567	-	histidinol dehydrogenase
563	 38.16	0	605401..606042	-	213	16802611	hisG	lmo0568	-	ATP phosphoribosyltransferase catalytic subunit
564	 40.19	0	606039..607220	-	393	16802612	hisZ	lmo0569	-	ATP phosphoribosyltransferase regulatory subunit
565	 40.34	0	607372..608199	+	275	16802613	hisJ	lmo0570	-	histidinol-phosphatase
566	 44.44	+1	608184..608480	-	98	16802614	-	lmo0571	-	hypothetical protein
567	 35.85	0	608557..609588	+	343	16802615	-	lmo0572	-	hypothetical protein
568	 41.20	0	609629..610924	-	431	16802616	-	lmo0573	-	hypothetical protein
569	 40.14	0	611240..612634	+	464	16802617	-	lmo0574	-	hypothetical protein
570	 39.92	0	612678..613406	+	242	16802618	-	lmo0575	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.