IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
386	 37.37	0	412849..413964	-	371	16802434	ltrA	lmo0389	-	low temperature requirement protein A
387	 40.99	0	414095..414760	+	221	16802435	-	lmo0390	-	uracil-DNA glycosylase
388	 39.33	0	414928..415227	+	99	16802436	-	lmo0391	-	hypothetical protein
389	 42.12	+1	415224..416168	+	314	16802437	-	lmo0392	-	hypothetical protein
390	 38.44	0	416203..416652	+	149	16802438	-	lmo0393	-	hypothetical protein
391	 34.21	-1	416796..417479	+	227	16802439	-	lmo0394	-	hypothetical protein
392	 37.09	0	417535..417960	+	141	16802440	-	lmo0395	-	hypothetical protein
393	 40.82	0	417963..418763	-	266	16802441	proC	lmo0396	-	pyrroline-5-carboxylate reductase
394	 39.13	0	418891..419373	+	160	16802442	-	lmo0397	-	hypothetical protein
395	 39.43	0	419544..420002	+	152	16802443	-	lmo0398	-	hypothetical protein
396	 44.74	+2	419999..420331	+	110	16802444	-	lmo0399	-	hypothetical protein
397	 42.59	+1	420335..421447	+	370	16802445	-	lmo0400	-	hypothetical protein
398	 40.03	0	421469..424096	+	875	16802446	-	lmo0401	-	alpha-mannosidase
399	 38.55	0	424130..426064	+	644	16802447	-	lmo0402	-	hypothetical protein
400	 32.85	-1	426190..426606	+	138	16802448	-	lmo0403	-	hypothetical protein
401	 32.08	-1	426597..426995	+	132	16802449	-	lmo0404	-	hypothetical protein
402	 40.58	0	427104..428111	+	335	16802450	-	lmo0405	-	hypothetical protein
403	 37.53	0	428127..428507	+	126	16802451	-	lmo0406	-	hypothetical protein
404	 33.08	-1	428576..428968	+	130	16802452	-	lmo0407	-	hypothetical protein
405	 37.12	0	428981..429403	+	140	16802453	-	lmo0408	-	hypothetical protein
406	 36.86	0	429630..432095	+	821	16802454	-	lmo0409	-	hypothetical protein
407	 39.86	0	433153..434745	-	530	16802455	-	lmo0411	-	phosphoenolpyruvate synthase
408	 40.66	0	434945..435817	-	290	16802456	-	lmo0412	-	hypothetical protein
409	 42.19	+1	436161..436352	+	63	16802457	-	lmo0413	-	hypothetical protein
410	 41.48	+1	436379..437188	+	269	16802458	-	lmo0414	-	hypothetical protein
411	 36.69	0	437482..438882	+	466	16802459	-	lmo0415	-	hypothetical protein
412	 34.31	-1	439009..439212	+	67	16802460	-	lmo0416	-	hypothetical protein
413	 27.98	-2	439214..439624	+	136	16802461	-	lmo0417	-	hypothetical protein
414	 37.33	0	439677..439976	-	99	16802462	-	lmo0418	-	hypothetical protein
415	 33.87	-1	440056..440610	-	184	16802463	-	lmo0419	-	hypothetical protein
416	 39.48	0	440758..441570	+	270	16802464	-	lmo0420	-	hypothetical protein
417	 37.17	0	441622..442872	-	416	16802465	-	lmo0421	-	hypothetical protein
418	 31.71	-1	442869..443300	-	143	16802466	lstR	lmo0422	-	lineage-specific thermal regulator protein
419	 32.79	-1	443303..443851	-	182	16802467	-	lmo0423	-	RNA polymerase factor sigma C
420	 40.91	0	444031..444888	-	285	16802468	-	lmo0424	-	hypothetical protein
421	 39.76	0	445049..447010	+	653	16802469	-	lmo0425	-	hypothetical protein
422	 36.34	0	447010..447474	+	154	16802470	-	lmo0426	-	hypothetical protein
423	 39.88	0	447471..447791	+	106	16802471	-	lmo0427	-	hypothetical protein
424	 43.54	+1	447804..448910	+	368	16802472	-	lmo0428	-	hypothetical protein
425	 41.23	0	448926..451508	+	860	16802473	-	lmo0429	-	hypothetical protein
426	 36.30	0	451531..452406	-	291	16802474	-	lmo0430	-	hypothetical protein
427	 40.53	0	452524..453093	+	189	16802475	-	lmo0431	-	hypothetical protein
428	 41.10	0	453107..453853	+	248	16802476	-	lmo0432	-	hypothetical protein
429	 37.33	0	454534..456936	+	800	16802477	inlA	lmo0433	-	internalin A
430	 36.45	0	457021..458913	+	630	16802478	inlB	lmo0434	-	internalin B
431	 33.55	-1	459681..465722	+	2013	16802479	-	lmo0435	-	peptidoglycan binding protein
432	 31.89	-1	465934..466419	-	161	16802480	-	lmo0436	-	hypothetical protein
433	 41.02	0	466517..467362	+	281	16802481	-	lmo0437	-	hypothetical protein
434	 33.82	-1	467519..468136	+	205	16802482	-	lmo0438	-	hypothetical protein
435	 38.30	0	468169..469437	-	422	16802483	-	lmo0439	-	hypothetical protein
436	 32.34	-1	469575..470078	+	167	16802484	-	lmo0440	-	hypothetical protein
437	 39.76	0	470122..472158	-	678	16802485	-	lmo0441	-	hypothetical protein
438	 42.86	+1	472330..472644	+	104	16802486	-	lmo0442	-	hypothetical protein
439	 38.82	0	472781..473710	+	309	16802487	-	lmo0443	-	hypothetical protein
440	 37.36	0	473936..476716	+	926	16802488	-	lmo0444	-	hypothetical protein
441	 33.53	-1	476960..478447	+	495	16802489	-	lmo0445	-	hypothetical protein
442	 38.99	0	478721..479710	+	329	16802490	-	lmo0446	-	hypothetical protein
443	 39.09	0	479765..481153	+	462	16802491	-	lmo0447	-	hypothetical protein
444	 35.95	0	481250..482701	+	483	16802492	-	lmo0448	-	hypothetical protein
445	 37.60	0	483166..483891	+	241	16802493	-	lmo0449	-	hypothetical protein
446	 39.64	0	483934..484599	-	221	16802494	-	lmo0450	-	hypothetical protein
447	 35.85	0	484620..485375	-	251	16802495	-	lmo0451	-	hypothetical protein
448	 39.35	0	485493..487652	-	719	16802496	-	lmo0452	-	hypothetical protein
449	 40.12	0	487649..488797	-	382	16802497	-	lmo0453	-	hypothetical protein
450	 39.98	0	488802..489749	-	315	16802498	-	lmo0454	-	hypothetical protein
451	 36.65	0	489905..491500	+	531	16802499	-	lmo0455	-	hypothetical protein
452	 41.12	0	491634..492917	+	427	16802500	-	lmo0456	-	hypothetical protein
453	 43.78	+1	492918..494018	+	366	16802501	-	lmo0457	-	hypothetical protein
454	 44.75	+2	494011..495561	+	516	16802502	-	lmo0458	-	hypothetical protein
455	 32.55	-1	496381..497919	+	512	16802503	-	lmo0459	-	hypothetical protein
456	 37.34	0	498171..500240	+	689	16802504	-	lmo0460	-	putative membrane associated lipoprotein
457	 33.54	-1	500306..500779	+	157	16802505	-	lmo0461	-	hypothetical protein
458	 35.19	0	500799..501284	+	161	16802506	-	lmo0462	-	hypothetical protein
459	 37.91	0	501312..501617	+	101	16802507	-	lmo0463	-	hypothetical protein
460	 34.83	0	501693..501959	+	88	16802508	-	lmo0464	-	hypothetical protein
461	 32.49	-1	502424..502660	-	78	16802509	-	lmo0465	-	hypothetical protein
462	 30.10	-2	502899..504629	+	576	16802510	-	lmo0466	-	hypothetical protein
463	 33.33	-1	504674..504997	+	107	16802511	-	lmo0467	-	hypothetical protein
464	 31.05	-2	504972..505277	+	101	16802512	-	lmo0468	-	hypothetical protein
465	 29.67	-2	505351..506223	+	290	16802513	-	lmo0469	-	hypothetical protein
466	 34.92	0	506368..506997	+	209	16802514	-	lmo0470	-	hypothetical protein
467	 33.04	-1	507723..508733	+	336	16802515	-	lmo0471	-	hypothetical protein
468	 30.18	-2	509400..510287	+	295	16802516	-	lmo0472	-	hypothetical protein
469	 27.59	-2	511215..511562	+	115	16802517	-	lmo0474	-	hypothetical protein
470	 29.22	-2	511966..512208	+	80	16802518	-	lmo0475	-	hypothetical protein
471	 41.00	0	512291..513268	-	325	16802519	-	lmo0476	-	hypothetical protein
472	 33.60	-1	514004..514381	+	125	16802520	-	lmo0477	-	putative secreted protein
473	 31.75	-1	514681..515058	+	125	16802521	-	lmo0478	-	putative secreted protein
474	 34.72	0	515391..515750	+	119	16802522	-	lmo0479	-	putative secreted protein
475	 38.50	0	516076..516636	+	186	16802523	-	lmo0480	-	hypothetical protein
476	 40.39	0	516746..518446	+	566	16802524	-	lmo0481	-	hypothetical protein
477	 41.30	0	518597..519700	+	367	16802525	-	lmo0482	-	hypothetical protein
478	 42.92	+1	519789..520268	+	159	16802526	-	lmo0483	-	hypothetical protein
479	 42.90	+1	520426..520791	+	121	16802527	-	lmo0484	-	heme-degrading monooxygenase IsdG
480	 41.67	+1	520961..521536	+	191	16802528	-	lmo0485	-	hypothetical protein
481	 46.20	+2	521601..521771	+	56	16802529	rpmF	lmo0486	-	50S ribosomal protein L32
482	 41.29	0	521863..522591	+	242	16802530	-	lmo0487	-	hypothetical protein
483	 38.03	0	522628..523521	-	297	16802531	-	lmo0488	-	hypothetical protein
484	 41.20	0	523719..525713	+	664	16802532	-	lmo0489	-	hypothetical protein
485	 39.73	0	525813..526688	+	291	16802533	aroE	lmo0490	-	shikimate 5-dehydrogenase
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.