IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
336	 37.37	0	370032..370403	+	123	16802384	-	lmo0339	-	hypothetical protein
337	 39.73	0	370416..370634	+	72	16802385	-	lmo0340	-	hypothetical protein
338	 35.44	0	370732..371064	-	110	16802386	-	lmo0341	-	hypothetical protein
339	 47.10	+2	371130..373127	-	665	16802387	-	lmo0342	-	hypothetical protein
340	 40.94	0	373129..373785	-	218	16802388	-	lmo0343	-	putative translaldolase
341	 40.92	0	373832..374596	-	254	16802389	-	lmo0344	-	short chain dehydrogenase
342	 40.94	0	374621..375067	-	148	16802390	-	lmo0345	-	hypothetical protein
343	 41.57	+1	375074..375838	-	254	16802391	-	lmo0346	-	hypothetical protein
344	 44.70	+1	375842..376492	-	216	16802392	-	lmo0347	-	hypothetical protein
345	 42.77	+1	376514..377509	-	331	16802393	-	lmo0348	-	hypothetical protein
346	 42.40	+1	377531..377872	-	113	16802394	-	lmo0349	-	hypothetical protein
347	 38.43	0	377888..378319	-	143	16802395	-	lmo0350	-	hypothetical protein
348	 38.10	0	378404..378781	-	125	16802396	-	lmo0351	-	hypothetical protein
349	 36.34	0	378964..379728	+	254	16802397	-	lmo0352	-	hypothetical protein
350	 38.41	0	379794..380207	+	137	16802398	-	lmo0353	-	hypothetical protein
351	 39.16	0	380253..381779	-	508	16802399	-	lmo0354	-	hypothetical protein
352	 38.86	0	382016..383536	+	506	16802400	-	lmo0355	-	fumarate reductase flavoprotein subunit
353	 37.66	0	383710..384726	+	338	16802401	-	lmo0356	-	hypothetical protein
354	 29.08	-2	384926..385372	+	148	16802402	-	lmo0357	-	hypothetical protein
355	 41.15	0	385386..386780	+	464	16802403	-	lmo0358	-	hypothetical protein
356	 37.86	0	386780..387640	+	286	16802404	-	lmo0359	-	hypothetical protein
357	 38.13	0	387697..388467	+	256	16802405	-	lmo0360	-	hypothetical protein
358	 38.37	0	388807..389541	-	244	16802406	-	lmo0361	-	hypothetical protein
359	 44.44	+1	389538..389717	-	59	16802407	-	lmo0362	-	hypothetical protein
360	 36.25	0	389813..390430	-	205	16802408	-	lmo0363	-	hypothetical protein
361	 32.38	-1	390529..391473	+	314	16802409	-	lmo0364	-	hypothetical protein
362	 40.51	0	391604..393052	+	482	16802410	-	lmo0365	-	hypothetical protein
363	 39.62	0	393086..394246	+	386	16802411	-	lmo0366	-	hypothetical protein
364	 45.42	+2	394264..395529	+	421	16802412	-	lmo0367	-	hypothetical protein
365	 39.41	0	395602..396111	+	169	16802413	-	lmo0368	-	hypothetical protein
366	 38.06	0	396208..396927	+	239	16802414	-	lmo0369	-	hypothetical protein
367	 41.37	0	396964..397299	+	111	16802415	-	lmo0370	-	hypothetical protein
368	 38.94	0	397340..398053	-	237	16802416	-	lmo0371	-	hypothetical protein
369	 38.39	0	398210..399652	+	480	16802417	-	lmo0372	-	hypothetical protein
370	 38.43	0	399645..400979	+	444	16802418	-	lmo0373	-	hypothetical protein
371	 39.27	0	400997..401299	+	100	16802419	-	lmo0374	-	hypothetical protein
372	 32.82	-1	401386..401580	+	64	16802420	-	lmo0375	-	hypothetical protein
373	 42.13	+1	401619..402539	-	306	16802421	-	lmo0376	-	hypothetical protein
374	 40.24	0	402641..403060	+	139	16802422	-	lmo0377	-	hypothetical protein
375	 27.07	-2	403279..403725	+	148	16802423	-	lmo0378	-	hypothetical protein
376	 31.36	-1	403743..404198	+	151	16802424	-	lmo0379	-	hypothetical protein
377	 27.14	-2	404365..404994	+	209	16802425	-	lmo0380	-	hypothetical protein
378	 28.94	-2	405221..405607	+	128	16802426	-	lmo0381	-	hypothetical protein
379	 41.34	0	405680..406441	-	253	16802427	-	lmo0382	-	hypothetical protein
380	 43.69	+1	406637..408103	+	488	16802428	-	lmo0383	-	hypothetical protein
381	 44.16	+1	408116..408937	+	273	16802429	-	lmo0384	-	hypothetical protein
382	 42.02	+1	408954..409931	+	325	16802430	-	lmo0385	-	hypothetical protein
383	 47.21	+2	409944..411860	+	638	16802431	-	lmo0386	-	hypothetical protein
384	 36.56	0	411992..412363	+	123	16802432	-	lmo0387	-	hypothetical protein
385	 37.13	0	412457..412825	+	122	16802433	-	lmo0388	-	hypothetical protein
386	 37.37	0	412849..413964	-	371	16802434	ltrA	lmo0389	-	low temperature requirement protein A
387	 40.99	0	414095..414760	+	221	16802435	-	lmo0390	-	uracil-DNA glycosylase
388	 39.33	0	414928..415227	+	99	16802436	-	lmo0391	-	hypothetical protein
389	 42.12	+1	415224..416168	+	314	16802437	-	lmo0392	-	hypothetical protein
390	 38.44	0	416203..416652	+	149	16802438	-	lmo0393	-	hypothetical protein
391	 34.21	-1	416796..417479	+	227	16802439	-	lmo0394	-	hypothetical protein
392	 37.09	0	417535..417960	+	141	16802440	-	lmo0395	-	hypothetical protein
393	 40.82	0	417963..418763	-	266	16802441	proC	lmo0396	-	pyrroline-5-carboxylate reductase
394	 39.13	0	418891..419373	+	160	16802442	-	lmo0397	-	hypothetical protein
395	 39.43	0	419544..420002	+	152	16802443	-	lmo0398	-	hypothetical protein
396	 44.74	+2	419999..420331	+	110	16802444	-	lmo0399	-	hypothetical protein
397	 42.59	+1	420335..421447	+	370	16802445	-	lmo0400	-	hypothetical protein
398	 40.03	0	421469..424096	+	875	16802446	-	lmo0401	-	alpha-mannosidase
399	 38.55	0	424130..426064	+	644	16802447	-	lmo0402	-	hypothetical protein
400	 32.85	-1	426190..426606	+	138	16802448	-	lmo0403	-	hypothetical protein
401	 32.08	-1	426597..426995	+	132	16802449	-	lmo0404	-	hypothetical protein
402	 40.58	0	427104..428111	+	335	16802450	-	lmo0405	-	hypothetical protein
403	 37.53	0	428127..428507	+	126	16802451	-	lmo0406	-	hypothetical protein
404	 33.08	-1	428576..428968	+	130	16802452	-	lmo0407	-	hypothetical protein
405	 37.12	0	428981..429403	+	140	16802453	-	lmo0408	-	hypothetical protein
406	 36.86	0	429630..432095	+	821	16802454	-	lmo0409	-	hypothetical protein
407	 39.86	0	433153..434745	-	530	16802455	-	lmo0411	-	phosphoenolpyruvate synthase
408	 40.66	0	434945..435817	-	290	16802456	-	lmo0412	-	hypothetical protein
409	 42.19	+1	436161..436352	+	63	16802457	-	lmo0413	-	hypothetical protein
410	 41.48	+1	436379..437188	+	269	16802458	-	lmo0414	-	hypothetical protein
411	 36.69	0	437482..438882	+	466	16802459	-	lmo0415	-	hypothetical protein
412	 34.31	-1	439009..439212	+	67	16802460	-	lmo0416	-	hypothetical protein
413	 27.98	-2	439214..439624	+	136	16802461	-	lmo0417	-	hypothetical protein
414	 37.33	0	439677..439976	-	99	16802462	-	lmo0418	-	hypothetical protein
415	 33.87	-1	440056..440610	-	184	16802463	-	lmo0419	-	hypothetical protein
416	 39.48	0	440758..441570	+	270	16802464	-	lmo0420	-	hypothetical protein
417	 37.17	0	441622..442872	-	416	16802465	-	lmo0421	-	hypothetical protein
418	 31.71	-1	442869..443300	-	143	16802466	lstR	lmo0422	-	lineage-specific thermal regulator protein
419	 32.79	-1	443303..443851	-	182	16802467	-	lmo0423	-	RNA polymerase factor sigma C
420	 40.91	0	444031..444888	-	285	16802468	-	lmo0424	-	hypothetical protein
421	 39.76	0	445049..447010	+	653	16802469	-	lmo0425	-	hypothetical protein
422	 36.34	0	447010..447474	+	154	16802470	-	lmo0426	-	hypothetical protein
423	 39.88	0	447471..447791	+	106	16802471	-	lmo0427	-	hypothetical protein
424	 43.54	+1	447804..448910	+	368	16802472	-	lmo0428	-	hypothetical protein
425	 41.23	0	448926..451508	+	860	16802473	-	lmo0429	-	hypothetical protein
426	 36.30	0	451531..452406	-	291	16802474	-	lmo0430	-	hypothetical protein
427	 40.53	0	452524..453093	+	189	16802475	-	lmo0431	-	hypothetical protein
428	 41.10	0	453107..453853	+	248	16802476	-	lmo0432	-	hypothetical protein
429	 37.33	0	454534..456936	+	800	16802477	inlA	lmo0433	-	internalin A
430	 36.45	0	457021..458913	+	630	16802478	inlB	lmo0434	-	internalin B
431	 33.55	-1	459681..465722	+	2013	16802479	-	lmo0435	-	peptidoglycan binding protein
432	 31.89	-1	465934..466419	-	161	16802480	-	lmo0436	-	hypothetical protein
433	 41.02	0	466517..467362	+	281	16802481	-	lmo0437	-	hypothetical protein
434	 33.82	-1	467519..468136	+	205	16802482	-	lmo0438	-	hypothetical protein
435	 38.30	0	468169..469437	-	422	16802483	-	lmo0439	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.