IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
305	 30.63	-2	331543..332688	+	381	16802353	-	lmo0307	-	hypothetical protein
306	 28.10	-2	333534..335195	+	553	16802354	-	lmo0309	-	hypothetical protein
307	 28.13	-2	335350..336426	+	358	16802355	-	lmo0310	-	hypothetical protein
308	 30.11	-2	336541..337161	+	206	16802356	-	lmo0311	-	hypothetical protein
309	 30.84	-2	337161..338363	+	400	16802357	-	lmo0312	-	hypothetical protein
310	 29.05	-2	338341..339087	+	248	16802358	-	lmo0313	-	hypothetical protein
311	 45.29	+2	339270..340055	+	261	16802359	-	lmo0314	-	hypothetical protein
312	 46.67	+2	340278..340952	+	224	16802360	-	lmo0315	-	hypothetical protein
313	 48.40	+2	340945..341754	+	269	16802361	-	lmo0316	-	hydroxyethylthiazole kinase
314	 45.90	+2	341751..342554	+	267	16802362	-	lmo0317	-	hypothetical protein
315	 47.13	+2	342551..343195	+	214	16802363	-	lmo0318	-	hypothetical protein
316	 42.09	+1	343221..344636	-	471	16802364	-	lmo0319	-	hypothetical protein
317	 39.58	0	344850..346049	-	399	16802365	-	lmo0320	-	hypothetical protein
318	 40.00	0	346377..347036	+	219	16802366	-	lmo0321	-	hypothetical protein
319	 31.04	-2	347219..347611	+	130	16802367	-	lmo0322	-	hypothetical protein
320	 39.30	0	347658..348428	-	256	16802368	-	lmo0323	-	hypothetical protein
321	 37.08	0	348586..349065	+	159	16802369	-	lmo0324	-	hypothetical protein
322	 33.78	-1	349326..350228	+	300	16802370	-	lmo0325	-	hypothetical protein
323	 38.83	0	350392..351264	+	290	16802371	-	lmo0326	-	hypothetical protein
324	 37.46	0	351459..355505	+	1348	16802372	-	lmo0327	-	hypothetical protein
325	 32.31	-1	355643..356323	+	226	16802373	-	lmo0328	-	hypothetical protein
326	 33.99	-1	356567..356872	+	101	16802374	-	lmo0329	-	hypothetical protein
327	 35.91	0	356890..357705	+	271	16802375	-	lmo0330	-	hypothetical protein
328	 34.44	-1	357775..359676	-	633	16802376	-	lmo0331	-	hypothetical protein
329	 30.36	-2	360172..360507	+	111	16802377	-	lmo0332	-	hypothetical protein
330	 35.73	0	360936..366272	+	1778	16802378	-	lmo0333	-	hypothetical protein
331	 30.48	-2	366508..367032	+	174	16802379	-	lmo0334	-	hypothetical protein
332	 41.40	+1	367248..367532	+	94	16802380	-	lmo0335	-	hypothetical protein
333	 42.01	+1	367533..367901	+	122	16802381	-	lmo0336	-	hypothetical protein
334	 39.63	0	367898..369373	+	491	16802382	-	lmo0337	-	hypothetical protein
335	 28.87	-2	369377..369757	+	126	16802383	-	lmo0338	-	hypothetical protein
336	 37.37	0	370032..370403	+	123	16802384	-	lmo0339	-	hypothetical protein
337	 39.73	0	370416..370634	+	72	16802385	-	lmo0340	-	hypothetical protein
338	 35.44	0	370732..371064	-	110	16802386	-	lmo0341	-	hypothetical protein
339	 47.10	+2	371130..373127	-	665	16802387	-	lmo0342	-	hypothetical protein
340	 40.94	0	373129..373785	-	218	16802388	-	lmo0343	-	putative translaldolase
341	 40.92	0	373832..374596	-	254	16802389	-	lmo0344	-	short chain dehydrogenase
342	 40.94	0	374621..375067	-	148	16802390	-	lmo0345	-	hypothetical protein
343	 41.57	+1	375074..375838	-	254	16802391	-	lmo0346	-	hypothetical protein
344	 44.70	+1	375842..376492	-	216	16802392	-	lmo0347	-	hypothetical protein
345	 42.77	+1	376514..377509	-	331	16802393	-	lmo0348	-	hypothetical protein
346	 42.40	+1	377531..377872	-	113	16802394	-	lmo0349	-	hypothetical protein
347	 38.43	0	377888..378319	-	143	16802395	-	lmo0350	-	hypothetical protein
348	 38.10	0	378404..378781	-	125	16802396	-	lmo0351	-	hypothetical protein
349	 36.34	0	378964..379728	+	254	16802397	-	lmo0352	-	hypothetical protein
350	 38.41	0	379794..380207	+	137	16802398	-	lmo0353	-	hypothetical protein
351	 39.16	0	380253..381779	-	508	16802399	-	lmo0354	-	hypothetical protein
352	 38.86	0	382016..383536	+	506	16802400	-	lmo0355	-	fumarate reductase flavoprotein subunit
353	 37.66	0	383710..384726	+	338	16802401	-	lmo0356	-	hypothetical protein
354	 29.08	-2	384926..385372	+	148	16802402	-	lmo0357	-	hypothetical protein
355	 41.15	0	385386..386780	+	464	16802403	-	lmo0358	-	hypothetical protein
356	 37.86	0	386780..387640	+	286	16802404	-	lmo0359	-	hypothetical protein
357	 38.13	0	387697..388467	+	256	16802405	-	lmo0360	-	hypothetical protein
358	 38.37	0	388807..389541	-	244	16802406	-	lmo0361	-	hypothetical protein
359	 44.44	+1	389538..389717	-	59	16802407	-	lmo0362	-	hypothetical protein
360	 36.25	0	389813..390430	-	205	16802408	-	lmo0363	-	hypothetical protein
361	 32.38	-1	390529..391473	+	314	16802409	-	lmo0364	-	hypothetical protein
362	 40.51	0	391604..393052	+	482	16802410	-	lmo0365	-	hypothetical protein
363	 39.62	0	393086..394246	+	386	16802411	-	lmo0366	-	hypothetical protein
364	 45.42	+2	394264..395529	+	421	16802412	-	lmo0367	-	hypothetical protein
365	 39.41	0	395602..396111	+	169	16802413	-	lmo0368	-	hypothetical protein
366	 38.06	0	396208..396927	+	239	16802414	-	lmo0369	-	hypothetical protein
367	 41.37	0	396964..397299	+	111	16802415	-	lmo0370	-	hypothetical protein
368	 38.94	0	397340..398053	-	237	16802416	-	lmo0371	-	hypothetical protein
369	 38.39	0	398210..399652	+	480	16802417	-	lmo0372	-	hypothetical protein
370	 38.43	0	399645..400979	+	444	16802418	-	lmo0373	-	hypothetical protein
371	 39.27	0	400997..401299	+	100	16802419	-	lmo0374	-	hypothetical protein
372	 32.82	-1	401386..401580	+	64	16802420	-	lmo0375	-	hypothetical protein
373	 42.13	+1	401619..402539	-	306	16802421	-	lmo0376	-	hypothetical protein
374	 40.24	0	402641..403060	+	139	16802422	-	lmo0377	-	hypothetical protein
375	 27.07	-2	403279..403725	+	148	16802423	-	lmo0378	-	hypothetical protein
376	 31.36	-1	403743..404198	+	151	16802424	-	lmo0379	-	hypothetical protein
377	 27.14	-2	404365..404994	+	209	16802425	-	lmo0380	-	hypothetical protein
378	 28.94	-2	405221..405607	+	128	16802426	-	lmo0381	-	hypothetical protein
379	 41.34	0	405680..406441	-	253	16802427	-	lmo0382	-	hypothetical protein
380	 43.69	+1	406637..408103	+	488	16802428	-	lmo0383	-	hypothetical protein
381	 44.16	+1	408116..408937	+	273	16802429	-	lmo0384	-	hypothetical protein
382	 42.02	+1	408954..409931	+	325	16802430	-	lmo0385	-	hypothetical protein
383	 47.21	+2	409944..411860	+	638	16802431	-	lmo0386	-	hypothetical protein
384	 36.56	0	411992..412363	+	123	16802432	-	lmo0387	-	hypothetical protein
385	 37.13	0	412457..412825	+	122	16802433	-	lmo0388	-	hypothetical protein
386	 37.37	0	412849..413964	-	371	16802434	ltrA	lmo0389	-	low temperature requirement protein A
387	 40.99	0	414095..414760	+	221	16802435	-	lmo0390	-	uracil-DNA glycosylase
388	 39.33	0	414928..415227	+	99	16802436	-	lmo0391	-	hypothetical protein
389	 42.12	+1	415224..416168	+	314	16802437	-	lmo0392	-	hypothetical protein
390	 38.44	0	416203..416652	+	149	16802438	-	lmo0393	-	hypothetical protein
391	 34.21	-1	416796..417479	+	227	16802439	-	lmo0394	-	hypothetical protein
392	 37.09	0	417535..417960	+	141	16802440	-	lmo0395	-	hypothetical protein
393	 40.82	0	417963..418763	-	266	16802441	proC	lmo0396	-	pyrroline-5-carboxylate reductase
394	 39.13	0	418891..419373	+	160	16802442	-	lmo0397	-	hypothetical protein
395	 39.43	0	419544..420002	+	152	16802443	-	lmo0398	-	hypothetical protein
396	 44.74	+2	419999..420331	+	110	16802444	-	lmo0399	-	hypothetical protein
397	 42.59	+1	420335..421447	+	370	16802445	-	lmo0400	-	hypothetical protein
398	 40.03	0	421469..424096	+	875	16802446	-	lmo0401	-	alpha-mannosidase
399	 38.55	0	424130..426064	+	644	16802447	-	lmo0402	-	hypothetical protein
400	 32.85	-1	426190..426606	+	138	16802448	-	lmo0403	-	hypothetical protein
401	 32.08	-1	426597..426995	+	132	16802449	-	lmo0404	-	hypothetical protein
402	 40.58	0	427104..428111	+	335	16802450	-	lmo0405	-	hypothetical protein
403	 37.53	0	428127..428507	+	126	16802451	-	lmo0406	-	hypothetical protein
404	 33.08	-1	428576..428968	+	130	16802452	-	lmo0407	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.