IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
276	 38.24	0	300617..301717	-	366	16802324	-	lmo0278	-	hypothetical protein
277	 39.62	0	302008..304140	+	710	16802325	-	lmo0279	-	anaerobic ribonucleoside triphosphate reductase
278	 44.93	+2	304133..304684	+	183	16802326	-	lmo0280	-	hypothetical protein
279	 32.29	-1	304942..305613	-	223	16802327	-	lmo0281	-	hypothetical protein
280	 38.33	0	305775..306554	-	259	16802328	-	lmo0282	-	hypothetical protein
281	 40.42	0	306644..307306	-	220	16802329	-	lmo0283	-	hypothetical protein
282	 40.41	0	307303..308319	-	338	16802330	-	lmo0284	-	hypothetical protein
283	 35.77	0	308334..309155	-	273	16802331	-	lmo0285	-	putative lipoprotein
284	 41.12	0	309538..310719	+	393	16802332	-	lmo0286	-	transaminase
285	 40.34	0	310932..311645	+	237	16802333	-	lmo0287	-	hypothetical protein
286	 39.72	0	311830..313662	+	610	16802334	-	lmo0288	-	hypothetical protein
287	 35.22	0	313659..314981	+	440	16802335	-	lmo0289	-	hypothetical protein
288	 37.26	0	314984..315823	+	279	16802336	-	lmo0290	-	hypothetical protein
289	 37.55	0	315945..316775	+	276	16802337	-	lmo0291	-	hypothetical protein
290	 39.92	0	316873..318375	+	500	16802338	-	lmo0292	-	hypothetical protein
291	 47.08	+2	319049..319528	+	159	16802339	-	lmo0293	-	SPOUT methyltransferase superfamily protein
292	 32.75	-1	319560..320423	-	287	16802340	-	lmo0294	-	hypothetical protein
293	 33.20	-1	320542..321279	+	245	16802341	-	lmo0295	-	hypothetical protein
294	 41.94	+1	321490..322128	+	212	16802342	-	lmo0296	-	hypothetical protein
295	 38.46	0	322134..324005	-	623	16802343	-	lmo0297	-	hypothetical protein
296	 42.62	+1	324104..325417	-	437	16802344	-	lmo0298	-	hypothetical protein
297	 43.99	+1	325422..325712	-	96	16802345	-	lmo0299	-	hypothetical protein
298	 42.82	+1	325729..327120	-	463	16802346	-	lmo0300	-	hypothetical protein
299	 42.69	+1	327113..327454	-	113	16802347	-	lmo0301	-	hypothetical protein
300	 40.35	0	327621..327905	+	94	16802348	-	lmo0302	-	hypothetical protein
301	 31.17	-2	327941..328495	+	184	16802349	-	lmo0303	-	putaive secreted, lysin rich protein
302	 30.81	-2	328701..329966	+	421	16802350	-	lmo0304	-	hypothetical protein
303	 42.90	+1	329923..330999	+	358	16802351	-	lmo0305	-	hypothetical protein
304	 27.08	-2	331063..331446	-	127	16802352	-	lmo0306	-	hypothetical protein
305	 30.63	-2	331543..332688	+	381	16802353	-	lmo0307	-	hypothetical protein
306	 28.10	-2	333534..335195	+	553	16802354	-	lmo0309	-	hypothetical protein
307	 28.13	-2	335350..336426	+	358	16802355	-	lmo0310	-	hypothetical protein
308	 30.11	-2	336541..337161	+	206	16802356	-	lmo0311	-	hypothetical protein
309	 30.84	-2	337161..338363	+	400	16802357	-	lmo0312	-	hypothetical protein
310	 29.05	-2	338341..339087	+	248	16802358	-	lmo0313	-	hypothetical protein
311	 45.29	+2	339270..340055	+	261	16802359	-	lmo0314	-	hypothetical protein
312	 46.67	+2	340278..340952	+	224	16802360	-	lmo0315	-	hypothetical protein
313	 48.40	+2	340945..341754	+	269	16802361	-	lmo0316	-	hydroxyethylthiazole kinase
314	 45.90	+2	341751..342554	+	267	16802362	-	lmo0317	-	hypothetical protein
315	 47.13	+2	342551..343195	+	214	16802363	-	lmo0318	-	hypothetical protein
316	 42.09	+1	343221..344636	-	471	16802364	-	lmo0319	-	hypothetical protein
317	 39.58	0	344850..346049	-	399	16802365	-	lmo0320	-	hypothetical protein
318	 40.00	0	346377..347036	+	219	16802366	-	lmo0321	-	hypothetical protein
319	 31.04	-2	347219..347611	+	130	16802367	-	lmo0322	-	hypothetical protein
320	 39.30	0	347658..348428	-	256	16802368	-	lmo0323	-	hypothetical protein
321	 37.08	0	348586..349065	+	159	16802369	-	lmo0324	-	hypothetical protein
322	 33.78	-1	349326..350228	+	300	16802370	-	lmo0325	-	hypothetical protein
323	 38.83	0	350392..351264	+	290	16802371	-	lmo0326	-	hypothetical protein
324	 37.46	0	351459..355505	+	1348	16802372	-	lmo0327	-	hypothetical protein
325	 32.31	-1	355643..356323	+	226	16802373	-	lmo0328	-	hypothetical protein
326	 33.99	-1	356567..356872	+	101	16802374	-	lmo0329	-	hypothetical protein
327	 35.91	0	356890..357705	+	271	16802375	-	lmo0330	-	hypothetical protein
328	 34.44	-1	357775..359676	-	633	16802376	-	lmo0331	-	hypothetical protein
329	 30.36	-2	360172..360507	+	111	16802377	-	lmo0332	-	hypothetical protein
330	 35.73	0	360936..366272	+	1778	16802378	-	lmo0333	-	hypothetical protein
331	 30.48	-2	366508..367032	+	174	16802379	-	lmo0334	-	hypothetical protein
332	 41.40	+1	367248..367532	+	94	16802380	-	lmo0335	-	hypothetical protein
333	 42.01	+1	367533..367901	+	122	16802381	-	lmo0336	-	hypothetical protein
334	 39.63	0	367898..369373	+	491	16802382	-	lmo0337	-	hypothetical protein
335	 28.87	-2	369377..369757	+	126	16802383	-	lmo0338	-	hypothetical protein
336	 37.37	0	370032..370403	+	123	16802384	-	lmo0339	-	hypothetical protein
337	 39.73	0	370416..370634	+	72	16802385	-	lmo0340	-	hypothetical protein
338	 35.44	0	370732..371064	-	110	16802386	-	lmo0341	-	hypothetical protein
339	 47.10	+2	371130..373127	-	665	16802387	-	lmo0342	-	hypothetical protein
340	 40.94	0	373129..373785	-	218	16802388	-	lmo0343	-	putative translaldolase
341	 40.92	0	373832..374596	-	254	16802389	-	lmo0344	-	short chain dehydrogenase
342	 40.94	0	374621..375067	-	148	16802390	-	lmo0345	-	hypothetical protein
343	 41.57	+1	375074..375838	-	254	16802391	-	lmo0346	-	hypothetical protein
344	 44.70	+1	375842..376492	-	216	16802392	-	lmo0347	-	hypothetical protein
345	 42.77	+1	376514..377509	-	331	16802393	-	lmo0348	-	hypothetical protein
346	 42.40	+1	377531..377872	-	113	16802394	-	lmo0349	-	hypothetical protein
347	 38.43	0	377888..378319	-	143	16802395	-	lmo0350	-	hypothetical protein
348	 38.10	0	378404..378781	-	125	16802396	-	lmo0351	-	hypothetical protein
349	 36.34	0	378964..379728	+	254	16802397	-	lmo0352	-	hypothetical protein
350	 38.41	0	379794..380207	+	137	16802398	-	lmo0353	-	hypothetical protein
351	 39.16	0	380253..381779	-	508	16802399	-	lmo0354	-	hypothetical protein
352	 38.86	0	382016..383536	+	506	16802400	-	lmo0355	-	fumarate reductase flavoprotein subunit
353	 37.66	0	383710..384726	+	338	16802401	-	lmo0356	-	hypothetical protein
354	 29.08	-2	384926..385372	+	148	16802402	-	lmo0357	-	hypothetical protein
355	 41.15	0	385386..386780	+	464	16802403	-	lmo0358	-	hypothetical protein
356	 37.86	0	386780..387640	+	286	16802404	-	lmo0359	-	hypothetical protein
357	 38.13	0	387697..388467	+	256	16802405	-	lmo0360	-	hypothetical protein
358	 38.37	0	388807..389541	-	244	16802406	-	lmo0361	-	hypothetical protein
359	 44.44	+1	389538..389717	-	59	16802407	-	lmo0362	-	hypothetical protein
360	 36.25	0	389813..390430	-	205	16802408	-	lmo0363	-	hypothetical protein
361	 32.38	-1	390529..391473	+	314	16802409	-	lmo0364	-	hypothetical protein
362	 40.51	0	391604..393052	+	482	16802410	-	lmo0365	-	hypothetical protein
363	 39.62	0	393086..394246	+	386	16802411	-	lmo0366	-	hypothetical protein
364	 45.42	+2	394264..395529	+	421	16802412	-	lmo0367	-	hypothetical protein
365	 39.41	0	395602..396111	+	169	16802413	-	lmo0368	-	hypothetical protein
366	 38.06	0	396208..396927	+	239	16802414	-	lmo0369	-	hypothetical protein
367	 41.37	0	396964..397299	+	111	16802415	-	lmo0370	-	hypothetical protein
368	 38.94	0	397340..398053	-	237	16802416	-	lmo0371	-	hypothetical protein
369	 38.39	0	398210..399652	+	480	16802417	-	lmo0372	-	hypothetical protein
370	 38.43	0	399645..400979	+	444	16802418	-	lmo0373	-	hypothetical protein
371	 39.27	0	400997..401299	+	100	16802419	-	lmo0374	-	hypothetical protein
372	 32.82	-1	401386..401580	+	64	16802420	-	lmo0375	-	hypothetical protein
373	 42.13	+1	401619..402539	-	306	16802421	-	lmo0376	-	hypothetical protein
374	 40.24	0	402641..403060	+	139	16802422	-	lmo0377	-	hypothetical protein
375	 27.07	-2	403279..403725	+	148	16802423	-	lmo0378	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.