IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.00   STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
230	 40.52	0	250592..253054	+	820	16802278	clpC	lmo0232	-	endopeptidase Clp ATP-binding chain C
231	 41.48	+1	253200..254573	+	457	16802279	-	lmo0233	-	DNA repair protein RadA
232	 35.57	0	254707..255780	+	357	16802280	-	lmo0234	-	hypothetical protein
233	 42.78	+1	255800..256498	+	232	16802281	ispD	lmo0235	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
234	 41.77	+1	256491..256964	+	157	16802282	ispF	lmo0236	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
235	 37.87	0	256983..258458	+	491	16802283	gltX	lmo0237	-	hypothetical protein
236	 44.88	+2	258856..259470	+	204	16802284	cysE	lmo0238	-	hypothetical protein
237	 40.40	0	259477..260892	+	471	16802285	cysS	lmo0239	-	cysteinyl-tRNA synthetase
238	 41.61	+1	260896..261306	+	136	16802286	-	lmo0240	-	hypothetical protein
239	 41.01	0	261306..262061	+	251	16802287	-	lmo0241	-	hypothetical protein
240	 40.94	0	262064..262576	+	170	16802288	-	lmo0242	-	hypothetical protein
241	 38.28	0	262657..263262	+	201	16802289	sigH	lmo0243	-	RNA polymerase factor sigma-70
242	 39.33	0	263366..263515	+	49	16802290	rpmG	lmo0244	-	50S ribosomal protein L33
243	 31.11	-2	263535..263714	+	59	16802291	secE	lmo0245	-	preprotein translocase subunit SecE
244	 38.76	0	263844..264377	+	177	16802292	nusG	lmo0246	-	transcription antitermination protein NusG
245	 35.88	0	264432..264902	+	156	16802293	-	lmo0247	-	hypothetical protein
246	 40.85	0	265029..265454	+	141	16802294	rplK	lmo0248	-	50S ribosomal protein L11
247	 39.86	0	265494..266183	+	229	16802295	rplA	lmo0249	-	50S ribosomal protein L1
248	 40.52	0	266431..266931	+	166	16802296	rplJ	lmo0250	-	50S ribosomal protein L10
249	 38.57	0	267010..267372	+	120	16802297	rplL	lmo0251	-	50S ribosomal protein L7/L12
250	 32.30	-1	267530..267916	+	128	16802298	-	lmo0252	-	hypothetical protein
251	 32.28	-1	267909..268949	+	346	16802299	-	lmo0253	-	hypothetical protein
252	 36.65	0	269067..269729	+	220	16802300	-	lmo0254	-	hypothetical protein
253	 33.93	-1	269754..270257	+	167	16802301	-	lmo0255	-	hypothetical protein
254	 36.96	0	270372..270977	+	201	16802302	-	lmo0256	-	hypothetical protein
255	 39.95	0	271324..272502	+	392	16802303	-	lmo0257	-	hypothetical protein
256	 41.88	+1	273003..276557	+	1184	16802304	rpoB	lmo0258	-	DNA-directed RNA polymerase subunit beta
257	 41.35	0	276728..280333	+	1201	16802305	rpoC	lmo0259	-	DNA-directed RNA polymerase subunit beta'
258	 41.03	0	280410..280955	+	181	16802306	-	lmo0260	-	hypothetical protein
259	 41.00	0	281021..282481	+	486	16802307	-	lmo0261	-	hypothetical protein
260	 36.39	0	282755..284227	+	490	16802308	inlG	lmo0262	-	internalin G
261	 38.55	0	284365..286011	+	548	16802309	inlH	lmo0263	-	internalin H
262	 35.07	0	286219..287718	+	499	16802310	inlE	lmo0264	-	internalin E
263	 37.98	0	287853..288992	+	379	16802311	-	lmo0265	-	succinyl-diaminopimelate desuccinylase
264	 37.65	0	289139..289555	+	138	16802312	-	lmo0266	-	hypothetical protein
265	 43.02	+1	289562..290521	+	319	16802313	-	lmo0267	-	hypothetical protein
266	 41.04	0	290593..291228	+	211	16802314	-	lmo0268	-	hypothetical protein
267	 41.71	+1	291312..293198	+	628	16802315	-	lmo0269	-	hypothetical protein
268	 38.57	0	293212..293841	-	209	16802316	-	lmo0270	-	hypothetical protein
269	 40.78	0	293845..295281	-	478	16802317	-	lmo0271	-	hypothetical protein
270	 36.90	0	295401..296213	-	270	16802318	-	lmo0272	-	hypothetical protein
271	 38.10	0	296349..296852	+	167	16802319	-	lmo0273	-	hypothetical protein
272	 32.88	-1	296889..297551	-	220	16802320	-	lmo0274	-	hypothetical protein
273	 37.25	0	297810..298652	-	280	16802321	-	lmo0275	-	hypothetical protein
274	 37.59	0	298669..299490	-	273	16802322	-	lmo0276	-	hypothetical protein
275	 38.99	0	299607..300578	+	323	16802323	-	lmo0277	-	hypothetical protein
276	 38.24	0	300617..301717	-	366	16802324	-	lmo0278	-	hypothetical protein
277	 39.62	0	302008..304140	+	710	16802325	-	lmo0279	-	anaerobic ribonucleoside triphosphate reductase
278	 44.93	+2	304133..304684	+	183	16802326	-	lmo0280	-	hypothetical protein
279	 32.29	-1	304942..305613	-	223	16802327	-	lmo0281	-	hypothetical protein
280	 38.33	0	305775..306554	-	259	16802328	-	lmo0282	-	hypothetical protein
281	 40.42	0	306644..307306	-	220	16802329	-	lmo0283	-	hypothetical protein
282	 40.41	0	307303..308319	-	338	16802330	-	lmo0284	-	hypothetical protein
283	 35.77	0	308334..309155	-	273	16802331	-	lmo0285	-	putative lipoprotein
284	 41.12	0	309538..310719	+	393	16802332	-	lmo0286	-	transaminase
285	 40.34	0	310932..311645	+	237	16802333	-	lmo0287	-	hypothetical protein
286	 39.72	0	311830..313662	+	610	16802334	-	lmo0288	-	hypothetical protein
287	 35.22	0	313659..314981	+	440	16802335	-	lmo0289	-	hypothetical protein
288	 37.26	0	314984..315823	+	279	16802336	-	lmo0290	-	hypothetical protein
289	 37.55	0	315945..316775	+	276	16802337	-	lmo0291	-	hypothetical protein
290	 39.92	0	316873..318375	+	500	16802338	-	lmo0292	-	hypothetical protein
291	 47.08	+2	319049..319528	+	159	16802339	-	lmo0293	-	SPOUT methyltransferase superfamily protein
292	 32.75	-1	319560..320423	-	287	16802340	-	lmo0294	-	hypothetical protein
293	 33.20	-1	320542..321279	+	245	16802341	-	lmo0295	-	hypothetical protein
294	 41.94	+1	321490..322128	+	212	16802342	-	lmo0296	-	hypothetical protein
295	 38.46	0	322134..324005	-	623	16802343	-	lmo0297	-	hypothetical protein
296	 42.62	+1	324104..325417	-	437	16802344	-	lmo0298	-	hypothetical protein
297	 43.99	+1	325422..325712	-	96	16802345	-	lmo0299	-	hypothetical protein
298	 42.82	+1	325729..327120	-	463	16802346	-	lmo0300	-	hypothetical protein
299	 42.69	+1	327113..327454	-	113	16802347	-	lmo0301	-	hypothetical protein
300	 40.35	0	327621..327905	+	94	16802348	-	lmo0302	-	hypothetical protein
301	 31.17	-2	327941..328495	+	184	16802349	-	lmo0303	-	putaive secreted, lysin rich protein
302	 30.81	-2	328701..329966	+	421	16802350	-	lmo0304	-	hypothetical protein
303	 42.90	+1	329923..330999	+	358	16802351	-	lmo0305	-	hypothetical protein
304	 27.08	-2	331063..331446	-	127	16802352	-	lmo0306	-	hypothetical protein
305	 30.63	-2	331543..332688	+	381	16802353	-	lmo0307	-	hypothetical protein
306	 28.10	-2	333534..335195	+	553	16802354	-	lmo0309	-	hypothetical protein
307	 28.13	-2	335350..336426	+	358	16802355	-	lmo0310	-	hypothetical protein
308	 30.11	-2	336541..337161	+	206	16802356	-	lmo0311	-	hypothetical protein
309	 30.84	-2	337161..338363	+	400	16802357	-	lmo0312	-	hypothetical protein
310	 29.05	-2	338341..339087	+	248	16802358	-	lmo0313	-	hypothetical protein
311	 45.29	+2	339270..340055	+	261	16802359	-	lmo0314	-	hypothetical protein
312	 46.67	+2	340278..340952	+	224	16802360	-	lmo0315	-	hypothetical protein
313	 48.40	+2	340945..341754	+	269	16802361	-	lmo0316	-	hydroxyethylthiazole kinase
314	 45.90	+2	341751..342554	+	267	16802362	-	lmo0317	-	hypothetical protein
315	 47.13	+2	342551..343195	+	214	16802363	-	lmo0318	-	hypothetical protein
316	 42.09	+1	343221..344636	-	471	16802364	-	lmo0319	-	hypothetical protein
317	 39.58	0	344850..346049	-	399	16802365	-	lmo0320	-	hypothetical protein
318	 40.00	0	346377..347036	+	219	16802366	-	lmo0321	-	hypothetical protein
319	 31.04	-2	347219..347611	+	130	16802367	-	lmo0322	-	hypothetical protein
320	 39.30	0	347658..348428	-	256	16802368	-	lmo0323	-	hypothetical protein
321	 37.08	0	348586..349065	+	159	16802369	-	lmo0324	-	hypothetical protein
322	 33.78	-1	349326..350228	+	300	16802370	-	lmo0325	-	hypothetical protein
323	 38.83	0	350392..351264	+	290	16802371	-	lmo0326	-	hypothetical protein
324	 37.46	0	351459..355505	+	1348	16802372	-	lmo0327	-	hypothetical protein
325	 32.31	-1	355643..356323	+	226	16802373	-	lmo0328	-	hypothetical protein
326	 33.99	-1	356567..356872	+	101	16802374	-	lmo0329	-	hypothetical protein
327	 35.91	0	356890..357705	+	271	16802375	-	lmo0330	-	hypothetical protein
328	 34.44	-1	357775..359676	-	633	16802376	-	lmo0331	-	hypothetical protein
329	 30.36	-2	360172..360507	+	111	16802377	-	lmo0332	-	hypothetical protein
38.00	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.