IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2719	 37.42	0	2803445..2804056	-	203	16804767	-	lmo2730	-	hypothetical protein
2720	 34.96	0	2804070..2804438	-	122	16804768	-	lmo2731	-	hypothetical protein
2721	 32.80	-1	2804522..2805274	-	250	16804769	-	lmo2732	-	hypothetical protein
2722	 39.56	0	2805440..2807398	+	652	16804770	-	lmo2733	-	hypothetical protein
2723	 38.54	0	2807459..2810107	+	882	16804771	-	lmo2734	-	hypothetical protein
2724	 40.29	0	2810109..2811791	+	560	16804772	-	lmo2735	-	hypothetical protein
2725	 44.97	+2	2811788..2812921	+	377	16804773	-	lmo2736	-	hypothetical protein
2726	 41.48	+1	2812925..2813881	-	318	16804774	-	lmo2737	-	hypothetical protein
2727	 39.48	0	2813949..2815283	-	444	16804775	-	lmo2738	-	hypothetical protein
2728	 38.84	0	2815401..2816090	-	229	16804776	-	lmo2739	-	NAD-dependent deacetylase
2729	 38.14	0	2816083..2816373	-	96	16804777	-	lmo2740	-	hypothetical protein
2730	 41.77	+1	2816363..2817571	-	402	16804778	-	lmo2741	-	hypothetical protein
2731	 35.92	0	2817688..2818035	-	115	16804779	-	lmo2742	-	hypothetical protein
2732	 42.17	+1	2818054..2818698	-	214	16804780	-	lmo2743	-	putative translaldolase
2733	 36.38	0	2818841..2819530	-	229	16804781	-	lmo2744	-	hypothetical protein
2734	 41.09	0	2819860..2821587	+	575	16804782	-	lmo2745	-	hypothetical protein
2735	 39.29	0	2821641..2821892	-	83	16804783	-	lmo2746	-	hypothetical protein
2736	 40.11	0	2821912..2823195	-	427	16804784	serS	lmo2747	-	seryl-tRNA synthetase
2737	 39.05	0	2823530..2823949	-	139	16804785	-	lmo2748	-	hypothetical protein
2738	 42.41	+1	2824079..2824651	+	190	16804786	-	lmo2749	-	hypothetical protein
2739	 39.72	0	2824648..2826354	+	568	16804787	-	lmo2750	-	hypothetical protein
2740	 40.13	0	2826515..2828236	+	573	16804788	-	lmo2751	-	hypothetical protein
2741	 39.71	0	2828236..2830008	+	590	16804789	-	lmo2752	-	hypothetical protein
2742	 27.08	-2	2830284..2830523	+	79	16804790	-	lmo2753	-	hypothetical protein
2743	 39.09	0	2830542..2831879	-	445	16804791	-	lmo2754	-	hypothetical protein
2744	 39.75	0	2832058..2833725	-	555	16804792	-	lmo2755	-	hypothetical protein
2745	 40.58	0	2833834..2835987	-	717	16804793	topB	lmo2756	-	DNA topoisomerase III
2746	 40.10	0	2836011..2837783	-	590	16804794	-	lmo2757	-	hypothetical protein
2747	 40.76	0	2837944..2839410	-	488	16804795	guaB	lmo2758	-	hypothetical protein
2748	 41.43	+1	2839698..2840228	-	176	16804796	-	lmo2759	-	hypothetical protein
2749	 41.03	0	2840286..2841896	-	536	16804797	-	lmo2760	-	hypothetical protein
2750	 42.89	+1	2842413..2843867	+	484	16804798	-	lmo2761	-	hypothetical protein
2751	 39.93	0	2843914..2844216	+	100	16804799	-	lmo2762	-	hypothetical protein
2752	 41.24	0	2844249..2845601	+	450	16804800	-	lmo2763	-	hypothetical protein
2753	 44.52	+1	2845613..2846497	+	294	16804801	-	lmo2764	-	hypothetical protein
2754	 40.45	0	2846490..2846798	+	102	16804802	-	lmo2765	-	hypothetical protein
2755	 39.18	0	2846839..2847573	-	244	16804803	-	lmo2766	-	hypothetical protein
2756	 37.25	0	2847673..2848335	-	220	16804804	-	lmo2767	-	hypothetical protein
2757	 36.25	0	2848406..2849536	-	376	16804805	-	lmo2768	-	hypothetical protein
2758	 36.60	0	2849563..2850450	-	295	16804806	-	lmo2769	-	hypothetical protein
2759	 39.85	0	2850620..2852950	+	776	16804807	-	lmo2770	-	bifunctional glutamate--cysteine ligase/glutathione synthetase
2760	 39.06	0	2852988..2854436	-	482	16804808	-	lmo2771	-	hypothetical protein
2761	 38.35	0	2854429..2856282	-	617	16804809	-	lmo2772	-	hypothetical protein
2762	 33.57	-1	2856379..2857218	-	279	16804810	-	lmo2773	-	hypothetical protein
2763	 35.42	0	2857580..2858203	-	207	16804811	-	lmo2774	-	hypothetical protein
2764	 30.75	-2	2858196..2860364	-	722	16804812	-	lmo2775	-	hypothetical protein
2765	 37.63	0	2860426..2860821	-	131	16804813	-	lmo2776	-	hypothetical protein
2766	 38.04	0	2861424..2862614	+	396	16804814	-	lmo2777	-	hypothetical protein
2767	 31.96	-1	2862774..2863283	-	169	16804815	-	lmo2778	-	hypothetical protein
2768	 41.42	+1	2863561..2864661	-	366	16804816	-	lmo2779	-	translation-associated GTPase
2769	 35.92	0	2864813..2865121	-	102	16804817	-	lmo2780	-	hypothetical protein
2770	 40.73	0	2865127..2867397	-	756	16804818	-	lmo2781	-	hypothetical protein
2771	 32.67	-1	2867432..2867731	-	99	16804819	-	lmo2782	-	hypothetical protein
2772	 38.04	0	2867746..2869041	-	431	16804820	-	lmo2783	-	hypothetical protein
2773	 35.94	0	2869191..2871107	-	638	16804821	-	lmo2784	-	hypothetical protein
2774	 40.76	0	2871318..2872784	-	488	16804822	kat	lmo2785	-	catalase
2775	 42.58	+1	2872932..2873915	-	327	16804823	bvrC	lmo2786	-	hypothetical protein
2776	 39.52	0	2873915..2875837	-	640	16804824	bvrB	lmo2787	-	beta-glucoside-specific phosphotransferase enzyme II ABC component
2777	 34.18	-1	2875945..2876775	-	276	16804825	bvrA	lmo2788	-	transcription antiterminator
2778	 36.71	0	2876947..2877153	-	68	16804826	-	lmo2789	-	hypothetical protein
2779	 36.03	0	2877160..2878011	-	283	16804827	parB	lmo2790	-	partition protein ParB homolg
2780	 35.83	0	2878004..2878765	-	253	16804828	parA	lmo2791	-	partition protein, ParA-like protein
2781	 37.02	0	2878989..2879747	-	252	16804829	-	lmo2792	-	hypothetical protein
2782	 37.33	0	2879906..2880205	-	99	16804830	-	lmo2793	-	hypothetical protein
2783	 38.95	0	2880217..2881071	-	284	16804831	-	lmo2794	-	hypothetical protein
2784	 36.93	0	2881243..2882049	-	268	16804832	-	lmo2795	-	hypothetical protein
2785	 43.05	+1	2882033..2882938	-	301	16804833	-	lmo2796	-	hypothetical protein
2786	 40.72	0	2882963..2883409	-	148	16804834	-	lmo2797	-	hypothetical protein
2787	 38.20	0	2883422..2884078	-	218	16804835	-	lmo2798	-	hypothetical protein
2788	 40.80	0	2884141..2885547	-	468	16804836	-	lmo2799	-	hypothetical protein
2789	 39.72	0	2885581..2886582	-	333	16804837	-	lmo2800	-	hypothetical protein
2790	 42.02	+1	2886584..2887297	-	237	16804838	-	lmo2801	-	N-acetylmannosamine-6-phosphate 2-epimerase
2791	 41.56	+1	2887499..2888215	-	238	16804839	gidB	lmo2802	-	glucose-inhibited division protein B
2792	 34.71	0	2888639..2889001	-	120	16804840	-	lmo2803	-	hypothetical protein
2793	 40.97	0	2888994..2890277	-	427	16804841	-	lmo2804	-	hypothetical protein
2794	 31.30	-1	2890274..2890666	-	130	16804842	-	lmo2805	-	hypothetical protein
2795	 32.06	-1	2890779..2891171	-	130	16804843	-	lmo2806	-	hypothetical protein
2796	 31.51	-1	2891269..2891652	-	127	16804844	-	lmo2807	-	hypothetical protein
2797	 30.73	-2	2891649..2892032	-	127	16804845	-	lmo2808	-	hypothetical protein
2798	 30.18	-2	2892057..2892437	-	126	16804846	-	lmo2809	-	hypothetical protein
2799	 41.69	+1	2892596..2894485	-	629	16804847	gidA	lmo2810	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2800	 42.94	+1	2894510..2895883	-	457	16804848	trmE	lmo2811	-	tRNA modification GTPase TrmE
2801	 41.76	+1	2896241..2897059	+	272	16804849	-	lmo2812	-	hypothetical protein
2802	 35.17	0	2897116..2897823	-	235	16804850	-	lmo2813	-	hypothetical protein
2803	 40.91	0	2897847..2898374	-	175	16804851	-	lmo2814	-	hypothetical protein
2804	 46.17	+2	2898535..2899266	+	243	16804852	fabG	lmo2815	-	3-ketoacyl-(acyl-carrier-protein) reductase
2805	 38.44	0	2899313..2900506	-	397	16804853	-	lmo2816	-	hypothetical protein
2806	 40.72	0	2900594..2901784	-	396	16804854	-	lmo2817	-	hypothetical protein
2807	 41.54	+1	2901800..2903200	-	466	16804855	-	lmo2818	-	hypothetical protein
2808	 40.73	0	2903200..2904402	-	400	16804856	-	lmo2819	-	hypothetical protein
2809	 38.03	0	2904598..2906940	-	780	16804857	-	lmo2820	-	amino-terminal domain-containing protein
2810	 38.18	0	2907153..2909708	+	851	16804858	-	lmo2821	-	hypothetical protein
2811	 37.65	0	2909753..2910076	-	107	16804859	-	lmo2822	-	hypothetical protein
2812	 41.55	+1	2910085..2911326	-	413	16804860	-	lmo2823	-	hypothetical protein
2813	 39.81	0	2911415..2912602	-	395	16804861	-	lmo2824	-	hypothetical protein
2814	 41.48	+1	2912595..2913686	-	363	16804862	serC	lmo2825	-	phosphoserine aminotransferase
2815	 41.17	0	2914057..2915205	-	382	16804863	-	lmo2826	-	hypothetical protein
2816	 41.37	+1	2915219..2915641	-	140	16804864	-	lmo2827	-	hypothetical protein
2817	 37.57	0	2915744..2916097	-	117	16804865	-	lmo2828	-	hypothetical protein
2818	 39.67	0	2916291..2916890	+	199	16804866	-	lmo2829	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.