IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2652	 41.38	+1	2736597..2737628	-	343	16804700	-	lmo2663	-	hypothetical protein
2653	 40.93	0	2737630..2738682	-	350	16804701	-	lmo2664	-	hypothetical protein
2654	 40.09	0	2738719..2739990	-	423	16804702	-	lmo2665	-	hypothetical protein
2655	 36.52	0	2740052..2740333	-	93	16804703	-	lmo2666	-	hypothetical protein
2656	 41.29	0	2740390..2740854	-	154	16804704	-	lmo2667	-	hypothetical protein
2657	 39.08	0	2740888..2742957	-	689	16804705	-	lmo2668	-	hypothetical protein
2658	 37.27	0	2743326..2744138	-	270	16804706	-	lmo2669	-	hypothetical protein
2659	 41.05	0	2744212..2744574	-	120	16804707	-	lmo2670	-	hypothetical protein
2660	 42.82	+1	2744571..2744939	-	122	16804708	-	lmo2671	-	hypothetical protein
2661	 38.41	0	2744985..2745791	-	268	16804709	-	lmo2672	-	hypothetical protein
2662	 41.83	+1	2745907..2746377	+	156	16804710	-	lmo2673	-	hypothetical protein
2663	 42.32	+1	2746423..2746878	+	151	16804711	-	lmo2674	-	ribose-5-phosphate isomerase B
2664	 41.81	+1	2747073..2747414	+	113	16804712	-	lmo2675	-	hypothetical protein
2665	 41.61	+1	2747427..2748683	+	418	16804713	-	lmo2676	-	hypothetical protein
2666	 40.84	0	2748685..2749497	-	270	16804714	-	lmo2677	-	hypothetical protein
2667	 44.11	+1	2749538..2750233	-	231	16804715	-	lmo2678	-	hypothetical protein
2668	 43.78	+1	2750230..2752920	-	896	16804716	-	lmo2679	-	hypothetical protein
2669	 42.76	+1	2752936..2753508	-	190	16804717	kdpC	lmo2680	-	potassium-transporting atpase c chain
2670	 43.79	+1	2753523..2755568	-	681	16804718	kdpB	lmo2681	-	potassium-transporting ATPase subunit B
2671	 44.60	+1	2755580..2757265	-	561	16804719	kdpA	lmo2682	-	potassium-transporting ATPase subunit A
2672	 34.64	0	2757606..2757911	+	101	16804720	-	lmo2683	-	hypothetical protein
2673	 40.83	0	2758046..2759353	+	435	16804721	-	lmo2684	-	hypothetical protein
2674	 38.94	0	2759390..2759692	+	100	16804722	-	lmo2685	-	hypothetical protein
2675	 31.84	-1	2760147..2760680	-	177	16804723	-	lmo2686	-	hypothetical protein
2676	 38.65	0	2760845..2761954	-	369	16804724	-	lmo2687	-	hypothetical protein
2677	 42.44	+1	2761951..2763081	-	376	16804725	-	lmo2688	-	hypothetical protein
2678	 40.61	0	2763082..2765652	-	856	16804726	-	lmo2689	-	hypothetical protein
2679	 35.80	0	2766207..2766773	-	188	16804727	-	lmo2690	-	hypothetical protein
2680	 40.16	0	2766935..2768707	+	590	16804728	-	lmo2691	-	autolysin
2681	 43.64	+1	2768944..2769273	-	109	16804729	-	lmo2692	-	hypothetical protein
2682	 43.54	+1	2769381..2770007	-	208	16804730	-	lmo2693	-	hypothetical protein
2683	 43.48	+1	2770060..2771439	-	459	16804731	-	lmo2694	-	hypothetical protein
2684	 44.44	+1	2771623..2772612	+	329	16804732	-	lmo2695	-	hypothetical protein
2685	 44.05	+1	2772634..2773230	+	198	16804733	-	lmo2696	-	hypothetical protein
2686	 38.67	0	2773234..2773608	+	124	16804734	-	lmo2697	-	hypothetical protein
2687	 36.50	0	2773714..2774565	+	283	16804735	-	lmo2698	-	hypothetical protein
2688	 40.00	0	2774684..2775523	+	279	16804736	-	lmo2699	-	hypothetical protein
2689	 40.45	0	2775644..2776486	+	280	16804737	-	lmo2700	-	hypothetical protein
2690	 33.74	-1	2776532..2776777	-	81	16804738	-	lmo2701	-	hypothetical protein
2691	 39.03	0	2776792..2777388	-	198	16804739	recR	lmo2702	-	recombination protein RecR
2692	 37.74	0	2777497..2777814	-	105	16804740	-	lmo2703	-	hypothetical protein
2693	 42.13	+1	2777844..2779583	-	579	16804741	dnaX	lmo2704	-	hypothetical protein
2694	 35.48	0	2779910..2780374	-	154	16804742	-	lmo2705	-	hypothetical protein
2695	 32.24	-1	2780392..2780574	-	60	16804743	-	lmo2706	-	hypothetical protein
2696	 30.63	-2	2780577..2780798	-	73	16804744	-	lmo2707	-	hypothetical protein
2697	 39.63	0	2780933..2782297	-	454	16804745	-	lmo2708	-	hypothetical protein
2698	 35.26	0	2782739..2782894	+	51	16804746	-	lmo2709	-	hypothetical protein
2699	 32.55	-1	2783466..2784107	-	213	16804747	-	lmo2710	-	hypothetical protein
2700	 43.93	+1	2784354..2784674	+	106	16804748	-	lmo2711	-	hypothetical protein
2701	 41.19	0	2784805..2786319	-	504	16804749	-	lmo2712	-	hypothetical protein
2702	 37.49	0	2786435..2787373	-	312	16804750	-	lmo2713	-	GW repeat-containing protein
2703	 37.24	0	2787416..2788363	-	315	16804751	-	lmo2714	-	pepdidoglycan bound protein
2704	 40.69	0	2788504..2790243	-	579	16804752	cydD	lmo2715	-	hypothetical protein
2705	 41.16	0	2790243..2791967	-	574	16804753	cydC	lmo2716	-	hypothetical protein
2706	 39.74	0	2791967..2792980	-	337	16804754	cydB	lmo2717	-	hypothetical protein
2707	 40.30	0	2792967..2794373	-	468	16804755	cydA	lmo2718	-	hypothetical protein
2708	 42.25	+1	2794755..2795225	-	156	16804756	-	lmo2719	-	hypothetical protein
2709	 42.84	+1	2795420..2796997	+	525	16804757	-	lmo2720	-	hypothetical protein
2710	 40.83	0	2797039..2797758	-	239	16804758	-	lmo2721	-	putative 6-phosphogluconolactonase
2711	 40.54	0	2797838..2798572	+	244	16804759	-	lmo2722	-	hypothetical protein
2712	 42.21	+1	2798626..2799087	+	153	16804760	-	lmo2723	-	hypothetical protein
2713	 40.77	0	2799108..2799551	-	147	16804761	-	lmo2724	-	hypothetical protein
2714	 42.13	+1	2799609..2800961	-	450	16804762	-	lmo2725	-	hypothetical protein
2715	 38.67	0	2800958..2801407	-	149	16804763	-	lmo2726	-	hypothetical protein
2716	 36.05	0	2801577..2802458	+	293	16804764	-	lmo2727	-	hypothetical protein
2717	 38.60	0	2802543..2802998	+	151	16804765	-	lmo2728	-	hypothetical protein
2718	 40.74	0	2802998..2803402	+	134	16804766	-	lmo2729	-	hypothetical protein
2719	 37.42	0	2803445..2804056	-	203	16804767	-	lmo2730	-	hypothetical protein
2720	 34.96	0	2804070..2804438	-	122	16804768	-	lmo2731	-	hypothetical protein
2721	 32.80	-1	2804522..2805274	-	250	16804769	-	lmo2732	-	hypothetical protein
2722	 39.56	0	2805440..2807398	+	652	16804770	-	lmo2733	-	hypothetical protein
2723	 38.54	0	2807459..2810107	+	882	16804771	-	lmo2734	-	hypothetical protein
2724	 40.29	0	2810109..2811791	+	560	16804772	-	lmo2735	-	hypothetical protein
2725	 44.97	+2	2811788..2812921	+	377	16804773	-	lmo2736	-	hypothetical protein
2726	 41.48	+1	2812925..2813881	-	318	16804774	-	lmo2737	-	hypothetical protein
2727	 39.48	0	2813949..2815283	-	444	16804775	-	lmo2738	-	hypothetical protein
2728	 38.84	0	2815401..2816090	-	229	16804776	-	lmo2739	-	NAD-dependent deacetylase
2729	 38.14	0	2816083..2816373	-	96	16804777	-	lmo2740	-	hypothetical protein
2730	 41.77	+1	2816363..2817571	-	402	16804778	-	lmo2741	-	hypothetical protein
2731	 35.92	0	2817688..2818035	-	115	16804779	-	lmo2742	-	hypothetical protein
2732	 42.17	+1	2818054..2818698	-	214	16804780	-	lmo2743	-	putative translaldolase
2733	 36.38	0	2818841..2819530	-	229	16804781	-	lmo2744	-	hypothetical protein
2734	 41.09	0	2819860..2821587	+	575	16804782	-	lmo2745	-	hypothetical protein
2735	 39.29	0	2821641..2821892	-	83	16804783	-	lmo2746	-	hypothetical protein
2736	 40.11	0	2821912..2823195	-	427	16804784	serS	lmo2747	-	seryl-tRNA synthetase
2737	 39.05	0	2823530..2823949	-	139	16804785	-	lmo2748	-	hypothetical protein
2738	 42.41	+1	2824079..2824651	+	190	16804786	-	lmo2749	-	hypothetical protein
2739	 39.72	0	2824648..2826354	+	568	16804787	-	lmo2750	-	hypothetical protein
2740	 40.13	0	2826515..2828236	+	573	16804788	-	lmo2751	-	hypothetical protein
2741	 39.71	0	2828236..2830008	+	590	16804789	-	lmo2752	-	hypothetical protein
2742	 27.08	-2	2830284..2830523	+	79	16804790	-	lmo2753	-	hypothetical protein
2743	 39.09	0	2830542..2831879	-	445	16804791	-	lmo2754	-	hypothetical protein
2744	 39.75	0	2832058..2833725	-	555	16804792	-	lmo2755	-	hypothetical protein
2745	 40.58	0	2833834..2835987	-	717	16804793	topB	lmo2756	-	DNA topoisomerase III
2746	 40.10	0	2836011..2837783	-	590	16804794	-	lmo2757	-	hypothetical protein
2747	 40.76	0	2837944..2839410	-	488	16804795	guaB	lmo2758	-	hypothetical protein
2748	 41.43	+1	2839698..2840228	-	176	16804796	-	lmo2759	-	hypothetical protein
2749	 41.03	0	2840286..2841896	-	536	16804797	-	lmo2760	-	hypothetical protein
2750	 42.89	+1	2842413..2843867	+	484	16804798	-	lmo2761	-	hypothetical protein
2751	 39.93	0	2843914..2844216	+	100	16804799	-	lmo2762	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.