IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.00   STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2606	 38.33	0	2697988..2698347	-	119	16804654	rplR	lmo2616	-	50S ribosomal protein L18
2607	 40.41	0	2698387..2698923	-	178	16804655	rplF	lmo2617	-	50S ribosomal protein L6
2608	 39.85	0	2698954..2699352	-	132	16804656	rpsH	lmo2618	-	30S ribosomal protein S8
2609	 41.40	+1	2699383..2699568	-	61	16804657	rpsN	lmo2619	-	30S ribosomal protein S14
2610	 38.33	0	2699600..2700139	-	179	16804658	rplE	lmo2620	-	50S ribosomal protein L5
2611	 38.46	0	2700166..2700477	-	103	16804659	rplX	lmo2621	-	50S ribosomal protein L24
2612	 41.19	0	2700515..2700883	-	122	16804660	rplN	lmo2622	-	50S ribosomal protein L14
2613	 36.74	0	2700963..2701226	-	87	16804661	rpsQ	lmo2623	-	30S ribosomal protein S17
2614	 39.06	0	2701254..2701445	-	63	16804662	rpmC	lmo2624	-	50S ribosomal protein L29
2615	 43.91	+1	2701435..2701869	-	144	16804663	rplP	lmo2625	-	50S ribosomal protein L16
2616	 43.84	+1	2701872..2702528	-	218	16804664	rpsC	lmo2626	-	30S ribosomal protein S3
2617	 41.74	+1	2702532..2702888	-	118	16804665	rplV	lmo2627	-	50S ribosomal protein L22
2618	 42.65	+1	2702909..2703187	-	92	16804666	rpsS	lmo2628	-	30S ribosomal protein S19
2619	 42.93	+1	2703275..2704108	-	277	16804667	rplB	lmo2629	-	50S ribosomal protein L2
2620	 37.19	0	2704149..2704433	-	94	16804668	rplW	lmo2630	-	50S ribosomal protein L23
2621	 39.58	0	2704433..2705056	-	207	16804669	rplD	lmo2631	-	50S ribosomal protein L4
2622	 42.06	+1	2705082..2705711	-	209	16804670	rplC	lmo2632	-	50S ribosomal protein L3
2623	 40.78	0	2705746..2706054	-	102	16804671	rpsJ	lmo2633	-	30S ribosomal protein S10
2624	 38.58	0	2706415..2707215	-	266	16804672	-	lmo2634	-	hypothetical protein
2625	 33.85	-1	2707235..2708194	-	319	16804673	-	lmo2635	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
2626	 36.75	0	2708276..2709358	-	360	16804674	-	lmo2636	-	hypothetical protein
2627	 36.22	0	2709522..2710421	-	299	16804675	-	lmo2637	-	hypothetical protein
2628	 39.96	0	2710869..2712755	+	628	16804676	-	lmo2638	-	hypothetical protein
2629	 37.93	0	2712931..2713365	+	144	16804677	-	lmo2639	-	hypothetical protein
2630	 41.80	+1	2713398..2713940	+	180	16804678	-	lmo2640	-	hypothetical protein
2631	 38.63	0	2713962..2714942	+	326	16804679	-	lmo2641	-	hypothetical protein
2632	 37.16	0	2715032..2716363	+	443	16804680	-	lmo2642	-	hypothetical protein
2633	 37.89	0	2716408..2717394	-	328	16804681	-	lmo2643	-	hypothetical protein
2634	 39.11	0	2717422..2718234	-	270	16804682	-	lmo2644	-	hypothetical protein
2635	 41.94	+1	2719056..2719775	-	239	16804683	-	lmo2646	-	hypothetical protein
2636	 40.80	0	2719735..2720484	-	249	16804684	-	lmo2647	-	hypothetical protein
2637	 39.78	0	2720497..2721489	-	330	16804685	-	lmo2648	-	hypothetical protein
2638	 41.26	0	2721559..2722857	-	432	16804686	ulaA	lmo2649	-	ascorbate-specific PTS system enzyme IIC
2639	 38.83	0	2722884..2723156	-	90	16804687	-	lmo2650	-	hypothetical protein
2640	 40.46	0	2723159..2723593	-	144	16804688	-	lmo2651	-	hypothetical protein
2641	 37.59	0	2723786..2725852	-	688	16804689	-	lmo2652	-	hypothetical protein
2642	 41.75	+1	2726008..2727195	-	395	16804690	tuf	lmo2653	-	elongation factor Tu
2643	 42.86	+1	2727304..2729391	-	695	16804691	fus	lmo2654	-	elongation factor G
2644	 41.61	+1	2729457..2729927	-	156	16804692	rpsG	lmo2655	-	30S ribosomal protein S7
2645	 38.65	0	2729958..2730371	-	137	16804693	rpsL	lmo2656	-	30S ribosomal protein S12
2646	 40.99	0	2730564..2731961	-	465	16804694	-	lmo2657	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
2647	 38.12	0	2731976..2732455	-	159	16804695	-	lmo2658	-	hypothetical protein
2648	 43.41	+1	2732589..2733233	-	214	16804696	-	lmo2659	-	hypothetical protein
2649	 45.34	+2	2733230..2735245	-	671	16804697	-	lmo2660	-	hypothetical protein
2650	 40.59	0	2735279..2735953	-	224	16804698	-	lmo2661	-	hypothetical protein
2651	 43.08	+1	2735962..2736402	-	146	16804699	-	lmo2662	-	hypothetical protein
2652	 41.38	+1	2736597..2737628	-	343	16804700	-	lmo2663	-	hypothetical protein
2653	 40.93	0	2737630..2738682	-	350	16804701	-	lmo2664	-	hypothetical protein
2654	 40.09	0	2738719..2739990	-	423	16804702	-	lmo2665	-	hypothetical protein
2655	 36.52	0	2740052..2740333	-	93	16804703	-	lmo2666	-	hypothetical protein
2656	 41.29	0	2740390..2740854	-	154	16804704	-	lmo2667	-	hypothetical protein
2657	 39.08	0	2740888..2742957	-	689	16804705	-	lmo2668	-	hypothetical protein
2658	 37.27	0	2743326..2744138	-	270	16804706	-	lmo2669	-	hypothetical protein
2659	 41.05	0	2744212..2744574	-	120	16804707	-	lmo2670	-	hypothetical protein
2660	 42.82	+1	2744571..2744939	-	122	16804708	-	lmo2671	-	hypothetical protein
2661	 38.41	0	2744985..2745791	-	268	16804709	-	lmo2672	-	hypothetical protein
2662	 41.83	+1	2745907..2746377	+	156	16804710	-	lmo2673	-	hypothetical protein
2663	 42.32	+1	2746423..2746878	+	151	16804711	-	lmo2674	-	ribose-5-phosphate isomerase B
2664	 41.81	+1	2747073..2747414	+	113	16804712	-	lmo2675	-	hypothetical protein
2665	 41.61	+1	2747427..2748683	+	418	16804713	-	lmo2676	-	hypothetical protein
2666	 40.84	0	2748685..2749497	-	270	16804714	-	lmo2677	-	hypothetical protein
2667	 44.11	+1	2749538..2750233	-	231	16804715	-	lmo2678	-	hypothetical protein
2668	 43.78	+1	2750230..2752920	-	896	16804716	-	lmo2679	-	hypothetical protein
2669	 42.76	+1	2752936..2753508	-	190	16804717	kdpC	lmo2680	-	potassium-transporting atpase c chain
2670	 43.79	+1	2753523..2755568	-	681	16804718	kdpB	lmo2681	-	potassium-transporting ATPase subunit B
2671	 44.60	+1	2755580..2757265	-	561	16804719	kdpA	lmo2682	-	potassium-transporting ATPase subunit A
2672	 34.64	0	2757606..2757911	+	101	16804720	-	lmo2683	-	hypothetical protein
2673	 40.83	0	2758046..2759353	+	435	16804721	-	lmo2684	-	hypothetical protein
2674	 38.94	0	2759390..2759692	+	100	16804722	-	lmo2685	-	hypothetical protein
2675	 31.84	-1	2760147..2760680	-	177	16804723	-	lmo2686	-	hypothetical protein
2676	 38.65	0	2760845..2761954	-	369	16804724	-	lmo2687	-	hypothetical protein
2677	 42.44	+1	2761951..2763081	-	376	16804725	-	lmo2688	-	hypothetical protein
2678	 40.61	0	2763082..2765652	-	856	16804726	-	lmo2689	-	hypothetical protein
2679	 35.80	0	2766207..2766773	-	188	16804727	-	lmo2690	-	hypothetical protein
2680	 40.16	0	2766935..2768707	+	590	16804728	-	lmo2691	-	autolysin
2681	 43.64	+1	2768944..2769273	-	109	16804729	-	lmo2692	-	hypothetical protein
2682	 43.54	+1	2769381..2770007	-	208	16804730	-	lmo2693	-	hypothetical protein
2683	 43.48	+1	2770060..2771439	-	459	16804731	-	lmo2694	-	hypothetical protein
2684	 44.44	+1	2771623..2772612	+	329	16804732	-	lmo2695	-	hypothetical protein
2685	 44.05	+1	2772634..2773230	+	198	16804733	-	lmo2696	-	hypothetical protein
2686	 38.67	0	2773234..2773608	+	124	16804734	-	lmo2697	-	hypothetical protein
2687	 36.50	0	2773714..2774565	+	283	16804735	-	lmo2698	-	hypothetical protein
2688	 40.00	0	2774684..2775523	+	279	16804736	-	lmo2699	-	hypothetical protein
2689	 40.45	0	2775644..2776486	+	280	16804737	-	lmo2700	-	hypothetical protein
2690	 33.74	-1	2776532..2776777	-	81	16804738	-	lmo2701	-	hypothetical protein
2691	 39.03	0	2776792..2777388	-	198	16804739	recR	lmo2702	-	recombination protein RecR
2692	 37.74	0	2777497..2777814	-	105	16804740	-	lmo2703	-	hypothetical protein
2693	 42.13	+1	2777844..2779583	-	579	16804741	dnaX	lmo2704	-	hypothetical protein
2694	 35.48	0	2779910..2780374	-	154	16804742	-	lmo2705	-	hypothetical protein
2695	 32.24	-1	2780392..2780574	-	60	16804743	-	lmo2706	-	hypothetical protein
2696	 30.63	-2	2780577..2780798	-	73	16804744	-	lmo2707	-	hypothetical protein
2697	 39.63	0	2780933..2782297	-	454	16804745	-	lmo2708	-	hypothetical protein
2698	 35.26	0	2782739..2782894	+	51	16804746	-	lmo2709	-	hypothetical protein
2699	 32.55	-1	2783466..2784107	-	213	16804747	-	lmo2710	-	hypothetical protein
2700	 43.93	+1	2784354..2784674	+	106	16804748	-	lmo2711	-	hypothetical protein
2701	 41.19	0	2784805..2786319	-	504	16804749	-	lmo2712	-	hypothetical protein
2702	 37.49	0	2786435..2787373	-	312	16804750	-	lmo2713	-	GW repeat-containing protein
2703	 37.24	0	2787416..2788363	-	315	16804751	-	lmo2714	-	pepdidoglycan bound protein
2704	 40.69	0	2788504..2790243	-	579	16804752	cydD	lmo2715	-	hypothetical protein
2705	 41.16	0	2790243..2791967	-	574	16804753	cydC	lmo2716	-	hypothetical protein
38.00	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.