IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.00   STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2552	 37.56	0	2642499..2642948	-	149	16804600	-	lmo2562	-	hypothetical protein
2553	 36.85	0	2643026..2643679	-	217	16804601	-	lmo2563	-	hypothetical protein
2554	 31.72	-1	2643753..2643938	+	61	16804602	-	lmo2564	-	hypothetical protein
2555	 38.55	0	2643973..2645295	-	440	16804603	-	lmo2565	-	hypothetical protein
2556	 39.90	0	2645310..2646146	-	278	16804604	-	lmo2566	-	hypothetical protein
2557	 34.33	-1	2646464..2646664	-	66	16804605	-	lmo2567	-	hypothetical protein
2558	 33.95	-1	2646686..2647009	-	107	16804606	-	lmo2568	-	hypothetical protein
2559	 39.41	0	2647164..2648825	-	553	16804607	-	lmo2569	-	hypothetical protein
2560	 35.28	0	2648960..2649574	-	204	16804608	-	lmo2570	-	hypothetical protein
2561	 41.71	+1	2649598..2650230	-	210	16804609	-	lmo2571	-	hypothetical protein
2562	 39.43	0	2650231..2650755	-	174	16804610	-	lmo2572	-	hypothetical protein
2563	 40.04	0	2650758..2651756	-	332	16804611	-	lmo2573	-	hypothetical protein
2564	 37.36	0	2651853..2652125	-	90	16804612	-	lmo2574	-	hypothetical protein
2565	 40.24	0	2652174..2653085	-	303	16804613	-	lmo2575	-	hypothetical protein
2566	 37.86	0	2653211..2657803	-	1530	16804614	-	lmo2576	-	pepdidoglycan bound protein
2567	 36.59	0	2658024..2658851	-	275	16804615	-	lmo2577	-	hypothetical protein
2568	 36.76	0	2658966..2659841	+	291	16804616	-	lmo2578	-	hypothetical protein
2569	 39.80	0	2659852..2660145	+	97	16804617	-	lmo2579	-	hypothetical protein
2570	 40.21	0	2660408..2661076	-	222	16804618	-	lmo2580	-	hypothetical protein
2571	 39.30	0	2661076..2662164	-	362	16804619	-	lmo2581	-	hypothetical protein
2572	 39.57	0	2662243..2663622	-	459	16804620	-	lmo2582	-	hypothetical protein
2573	 41.00	0	2663619..2664296	-	225	16804621	-	lmo2583	-	hypothetical protein
2574	 44.15	+1	2664343..2665128	-	261	16804622	-	lmo2584	-	formate dehydrogenase accessory protein
2575	 40.46	0	2665190..2665666	-	158	16804623	-	lmo2585	-	hypothetical protein
2576	 44.28	+1	2665666..2668653	-	995	16804624	-	lmo2586	-	hypothetical protein
2577	 41.99	+1	2669152..2669994	+	280	16804625	-	lmo2587	-	hypothetical protein
2578	 40.08	0	2670042..2671523	-	493	16804626	-	lmo2588	-	hypothetical protein
2579	 39.30	0	2671624..2672511	-	295	16804627	-	lmo2589	-	hypothetical protein
2580	 38.87	0	2678302..2679330	-	342	16804628	-	lmo2590	-	hypothetical protein
2581	 37.33	0	2679599..2681125	+	508	16804629	-	lmo2591	-	GW repeat-containing surface protein
2582	 40.61	0	2681167..2682018	-	283	16804630	-	lmo2592	-	hypothetical protein
2583	 39.24	0	2682040..2682462	-	140	16804631	-	lmo2593	-	hypothetical protein
2584	 33.33	-1	2682584..2682943	-	119	16804632	-	lmo2594	-	hypothetical protein
2585	 34.14	-1	2683187..2684056	+	289	16804633	-	lmo2595	-	hypothetical protein
2586	 45.29	+2	2684251..2684643	-	130	16804634	rpsI	lmo2596	-	30S ribosomal protein S9
2587	 39.95	0	2684665..2685102	-	145	16804635	rplM	lmo2597	-	50S ribosomal protein L13
2588	 40.56	0	2685297..2686043	-	248	16804636	truA	lmo2598	-	tRNA pseudouridine synthase A
2589	 38.47	0	2686049..2686846	-	265	16804637	-	lmo2599	-	hypothetical protein
2590	 42.45	+1	2686849..2687715	-	288	16804638	-	lmo2600	-	cobalt transporter ATP-binding subunit
2591	 41.67	+1	2687691..2688530	-	279	16804639	-	lmo2601	-	cobalt transporter ATP-binding subunit
2592	 40.87	0	2688661..2689323	+	220	16804640	-	lmo2602	-	hypothetical protein
2593	 38.72	0	2689442..2690332	+	296	16804641	-	lmo2603	-	hypothetical protein
2594	 39.82	0	2690371..2691465	-	364	16804642	-	lmo2604	-	hypothetical protein
2595	 40.93	0	2691673..2692080	-	135	16804643	rplQ	lmo2605	-	50S ribosomal protein L17
2596	 37.04	0	2692097..2693041	-	314	16804644	rpoA	lmo2606	-	DNA-directed RNA polymerase subunit alpha
2597	 42.05	+1	2693151..2693540	-	129	16804645	rpsK	lmo2607	-	30S ribosomal protein S11
2598	 41.53	+1	2693563..2693928	-	121	16804646	rpsM	lmo2608	-	30S ribosomal protein S13
2599	 29.82	-2	2693947..2694060	-	37	16804647	rpmJ	lmo2609	-	50S ribosomal protein L36
2600	 38.36	0	2694164..2694382	-	72	16804648	infA	lmo2610	-	translation initiation factor IF-1
2601	 39.51	0	2694769..2695416	-	215	16804649	adk	lmo2611	-	hypothetical protein
2602	 38.35	0	2695476..2696771	-	431	16804650	secY	lmo2612	-	preprotein translocase subunit SecY
2603	 39.91	0	2696771..2697211	-	146	16804651	rplO	lmo2613	-	50S ribosomal protein L15
2604	 37.78	0	2697267..2697446	-	59	16804652	rpmD	lmo2614	-	50S ribosomal protein L30
2605	 42.66	+1	2697463..2697966	-	167	16804653	rpsE	lmo2615	-	30S ribosomal protein S5
2606	 38.33	0	2697988..2698347	-	119	16804654	rplR	lmo2616	-	50S ribosomal protein L18
2607	 40.41	0	2698387..2698923	-	178	16804655	rplF	lmo2617	-	50S ribosomal protein L6
2608	 39.85	0	2698954..2699352	-	132	16804656	rpsH	lmo2618	-	30S ribosomal protein S8
2609	 41.40	+1	2699383..2699568	-	61	16804657	rpsN	lmo2619	-	30S ribosomal protein S14
2610	 38.33	0	2699600..2700139	-	179	16804658	rplE	lmo2620	-	50S ribosomal protein L5
2611	 38.46	0	2700166..2700477	-	103	16804659	rplX	lmo2621	-	50S ribosomal protein L24
2612	 41.19	0	2700515..2700883	-	122	16804660	rplN	lmo2622	-	50S ribosomal protein L14
2613	 36.74	0	2700963..2701226	-	87	16804661	rpsQ	lmo2623	-	30S ribosomal protein S17
2614	 39.06	0	2701254..2701445	-	63	16804662	rpmC	lmo2624	-	50S ribosomal protein L29
2615	 43.91	+1	2701435..2701869	-	144	16804663	rplP	lmo2625	-	50S ribosomal protein L16
2616	 43.84	+1	2701872..2702528	-	218	16804664	rpsC	lmo2626	-	30S ribosomal protein S3
2617	 41.74	+1	2702532..2702888	-	118	16804665	rplV	lmo2627	-	50S ribosomal protein L22
2618	 42.65	+1	2702909..2703187	-	92	16804666	rpsS	lmo2628	-	30S ribosomal protein S19
2619	 42.93	+1	2703275..2704108	-	277	16804667	rplB	lmo2629	-	50S ribosomal protein L2
2620	 37.19	0	2704149..2704433	-	94	16804668	rplW	lmo2630	-	50S ribosomal protein L23
2621	 39.58	0	2704433..2705056	-	207	16804669	rplD	lmo2631	-	50S ribosomal protein L4
2622	 42.06	+1	2705082..2705711	-	209	16804670	rplC	lmo2632	-	50S ribosomal protein L3
2623	 40.78	0	2705746..2706054	-	102	16804671	rpsJ	lmo2633	-	30S ribosomal protein S10
2624	 38.58	0	2706415..2707215	-	266	16804672	-	lmo2634	-	hypothetical protein
2625	 33.85	-1	2707235..2708194	-	319	16804673	-	lmo2635	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
2626	 36.75	0	2708276..2709358	-	360	16804674	-	lmo2636	-	hypothetical protein
2627	 36.22	0	2709522..2710421	-	299	16804675	-	lmo2637	-	hypothetical protein
2628	 39.96	0	2710869..2712755	+	628	16804676	-	lmo2638	-	hypothetical protein
2629	 37.93	0	2712931..2713365	+	144	16804677	-	lmo2639	-	hypothetical protein
2630	 41.80	+1	2713398..2713940	+	180	16804678	-	lmo2640	-	hypothetical protein
2631	 38.63	0	2713962..2714942	+	326	16804679	-	lmo2641	-	hypothetical protein
2632	 37.16	0	2715032..2716363	+	443	16804680	-	lmo2642	-	hypothetical protein
2633	 37.89	0	2716408..2717394	-	328	16804681	-	lmo2643	-	hypothetical protein
2634	 39.11	0	2717422..2718234	-	270	16804682	-	lmo2644	-	hypothetical protein
2635	 41.94	+1	2719056..2719775	-	239	16804683	-	lmo2646	-	hypothetical protein
2636	 40.80	0	2719735..2720484	-	249	16804684	-	lmo2647	-	hypothetical protein
2637	 39.78	0	2720497..2721489	-	330	16804685	-	lmo2648	-	hypothetical protein
2638	 41.26	0	2721559..2722857	-	432	16804686	ulaA	lmo2649	-	ascorbate-specific PTS system enzyme IIC
2639	 38.83	0	2722884..2723156	-	90	16804687	-	lmo2650	-	hypothetical protein
2640	 40.46	0	2723159..2723593	-	144	16804688	-	lmo2651	-	hypothetical protein
2641	 37.59	0	2723786..2725852	-	688	16804689	-	lmo2652	-	hypothetical protein
2642	 41.75	+1	2726008..2727195	-	395	16804690	tuf	lmo2653	-	elongation factor Tu
2643	 42.86	+1	2727304..2729391	-	695	16804691	fus	lmo2654	-	elongation factor G
2644	 41.61	+1	2729457..2729927	-	156	16804692	rpsG	lmo2655	-	30S ribosomal protein S7
2645	 38.65	0	2729958..2730371	-	137	16804693	rpsL	lmo2656	-	30S ribosomal protein S12
2646	 40.99	0	2730564..2731961	-	465	16804694	-	lmo2657	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
2647	 38.12	0	2731976..2732455	-	159	16804695	-	lmo2658	-	hypothetical protein
2648	 43.41	+1	2732589..2733233	-	214	16804696	-	lmo2659	-	hypothetical protein
2649	 45.34	+2	2733230..2735245	-	671	16804697	-	lmo2660	-	hypothetical protein
2650	 40.59	0	2735279..2735953	-	224	16804698	-	lmo2661	-	hypothetical protein
2651	 43.08	+1	2735962..2736402	-	146	16804699	-	lmo2662	-	hypothetical protein
38.00	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.