IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.00   STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2450	 42.69	+1	2532352..2533398	-	348	16804498	-	lmo2460	-	hypothetical protein
2451	 38.24	0	2533840..2535183	-	447	16804499	sigL	lmo2461	-	RNA polymerase factor sigma-54
2452	 39.16	0	2535342..2536268	-	308	16804500	-	lmo2462	-	hypothetical protein
2453	 40.27	0	2536347..2538581	-	744	16804501	-	lmo2463	-	hypothetical protein
2454	 34.48	-1	2538588..2539196	-	202	16804502	-	lmo2464	-	hypothetical protein
2455	 37.34	0	2539213..2539611	-	132	16804503	-	lmo2465	-	hypothetical protein
2456	 34.82	0	2539838..2540173	+	111	16804504	-	lmo2466	-	hypothetical protein
2457	 38.27	0	2540421..2541857	-	478	16804505	-	lmo2467	-	hypothetical protein
2458	 38.69	0	2542014..2542610	+	198	16804506	clpP	lmo2468	-	ATP-dependent Clp protease proteolytic subunit
2459	 38.07	0	2542658..2544049	-	463	16804507	-	lmo2469	-	hypothetical protein
2460	 33.68	-1	2544267..2545433	+	388	16804508	-	lmo2470	-	hypothetical protein
2461	 40.51	0	2545487..2546503	-	338	16804509	-	lmo2471	-	NADPH dehydrogenase NamA
2462	 40.53	0	2546530..2547501	-	323	16804510	-	lmo2472	-	hypothetical protein
2463	 40.56	0	2547509..2548477	-	322	16804511	-	lmo2473	-	hypothetical protein
2464	 39.73	0	2548479..2549354	-	291	16804512	-	lmo2474	-	hypothetical protein
2465	 39.17	0	2549462..2551192	-	576	16804513	-	lmo2475	-	hypothetical protein
2466	 39.64	0	2551234..2552295	-	353	16804514	-	lmo2476	-	hypothetical protein
2467	 39.02	0	2552312..2553295	-	327	16804515	galE	lmo2477	-	UDP-glucose 4-epimerase
2468	 41.56	+1	2553414..2554373	-	319	16804516	trxB	lmo2478	-	thioredoxin reductase
2469	 35.91	0	2554452..2555927	-	491	16804517	-	lmo2479	-	hypothetical protein
2470	 42.17	+1	2556013..2556510	-	165	16804518	-	lmo2480	-	hypothetical protein
2471	 37.00	0	2556514..2557167	-	217	16804519	-	lmo2481	-	pyrophosphatase PpaX
2472	 37.29	0	2557211..2558044	-	277	16804520	lgt	lmo2482	-	prolipoprotein diacylglyceryl transferase
2473	 38.23	0	2558130..2559068	-	312	16804521	-	lmo2483	-	HPr kinase/phosphorylase
2474	 34.18	-1	2559255..2559608	-	117	16804522	-	lmo2484	-	hypothetical protein
2475	 37.81	0	2559617..2559817	-	66	16804523	-	lmo2485	-	hypothetical protein
2476	 39.27	0	2559841..2561052	-	403	16804524	-	lmo2486	-	hypothetical protein
2477	 34.44	-1	2561120..2562382	-	420	16804525	-	lmo2487	-	hypothetical protein
2478	 38.77	0	2562591..2565461	-	956	16804526	uvrA	lmo2488	-	excinuclease ABC (subunit A)
2479	 39.96	0	2565469..2567445	-	658	16804527	uvrB	lmo2489	-	excinuclease ABC subunit B
2480	 37.08	0	2567696..2567935	-	79	16804528	-	lmo2490	-	hypothetical protein
2481	 37.19	0	2567956..2568603	-	215	16804529	-	lmo2491	-	hypothetical protein
2482	 35.40	0	2568625..2569011	-	128	16804530	-	lmo2492	-	hypothetical protein
2483	 38.24	0	2569117..2569422	-	101	16804531	-	lmo2493	-	hypothetical protein
2484	 37.58	0	2569690..2570349	-	219	16804532	-	lmo2494	-	hypothetical protein
2485	 40.13	0	2570362..2571141	-	259	16804533	-	lmo2495	-	hypothetical protein
2486	 38.11	0	2571156..2571971	-	271	16804534	-	lmo2496	-	hypothetical protein
2487	 42.71	+1	2571999..2572883	-	294	16804535	-	lmo2497	-	hypothetical protein
2488	 39.61	0	2572880..2573803	-	307	16804536	-	lmo2498	-	hypothetical protein
2489	 40.37	0	2573897..2574805	-	302	16804537	-	lmo2499	-	hypothetical protein
2490	 38.06	0	2575061..2576836	-	591	16804538	phoR	lmo2500	-	two-component sensor histidine kinase
2491	 35.44	0	2576836..2577546	-	236	16804539	phoP	lmo2501	-	two-component response phosphate regulator
2492	 37.41	0	2577696..2578871	-	391	16804540	-	lmo2502	-	hypothetical protein
2493	 35.61	0	2578899..2580347	-	482	16804541	-	lmo2503	-	hypothetical protein
2494	 37.53	0	2580470..2581780	-	436	16804542	-	lmo2504	-	hypothetical protein
2495	 37.73	0	2581900..2583105	-	401	16804543	spl	lmo2505	-	peptidoglycan lytic protein P45
2496	 37.18	0	2583181..2584065	-	294	16804544	ftsX	lmo2506	-	hypothetical protein
2497	 38.72	0	2584055..2584741	-	228	16804545	ftsE	lmo2507	-	hypothetical protein
2498	 38.19	0	2585245..2586108	-	287	16804546	-	lmo2508	-	hypothetical protein
2499	 39.02	0	2586114..2587097	-	327	16804547	prfB	lmo2509	-	peptide chain release factor 2
2500	 38.46	0	2587300..2589813	-	837	16804548	secA	lmo2510	-	preprotein translocase subunit SecA
2501	 33.87	-1	2590044..2590607	-	187	16804549	-	lmo2511	-	hypothetical protein
2502	 35.62	0	2590802..2591458	-	218	16804550	comFC	lmo2512	-	hypothetical protein
2503	 38.71	0	2591451..2592770	-	439	16804551	comFA	lmo2513	-	hypothetical protein
2504	 37.79	0	2592965..2593816	-	283	16804552	-	lmo2514	-	hypothetical protein
2505	 37.70	0	2593837..2594523	-	228	16804553	-	lmo2515	-	hypothetical protein
2506	 37.11	0	2594908..2595543	+	211	16804554	-	lmo2516	-	hypothetical protein
2507	 33.99	-1	2595485..2596090	+	201	16804555	-	lmo2517	-	hypothetical protein
2508	 37.20	0	2596266..2597324	+	352	16804556	-	lmo2518	-	hypothetical protein
2509	 35.04	0	2597363..2598415	-	350	16804557	-	lmo2519	-	hypothetical protein
2510	 37.42	0	2598423..2599547	-	374	16804558	-	lmo2520	-	hypothetical protein
2511	 38.78	0	2599548..2600282	-	244	16804559	-	lmo2521	-	hypothetical protein
2512	 33.81	-1	2600408..2601241	-	277	16804560	-	lmo2522	-	hypothetical protein
2513	 33.33	-1	2601632..2601997	-	121	16804561	-	lmo2523	-	hypothetical protein
2514	 37.93	0	2602249..2602683	-	144	16804562	-	lmo2524	-	hypothetical protein
2515	 36.55	0	2602705..2603700	-	331	16804563	mbl	lmo2525	-	hypothetical protein
2516	 38.98	0	2603863..2605155	-	430	16804564	murA	lmo2526	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2517	 24.05	-2	2605337..2605573	-	78	16804565	-	lmo2527	-	hypothetical protein
2518	 40.99	0	2605697..2606101	-	134	16804566	atpC	lmo2528	-	F0F1 ATP synthase subunit epsilon
2519	 41.00	0	2606123..2607544	-	473	16804567	atpD	lmo2529	-	F0F1 ATP synthase subunit beta
2520	 38.26	0	2607605..2608477	-	290	16804568	atpG	lmo2530	-	F0F1 ATP synthase subunit gamma
2521	 41.65	+1	2608515..2610029	-	504	16804569	atpA	lmo2531	-	F0F1 ATP synthase subunit alpha
2522	 36.30	0	2610056..2610595	-	179	16804570	atpH	lmo2532	-	F0F1 ATP synthase subunit delta
2523	 37.43	0	2610592..2611104	-	170	16804571	atpF	lmo2533	-	F0F1 ATP synthase subunit B
2524	 42.92	+1	2611192..2611410	-	72	16804572	atpE	lmo2534	-	F0F1 ATP synthase subunit C
2525	 37.52	0	2611482..2612198	-	238	16804573	atpB	lmo2535	-	F0F1 ATP synthase subunit A
2526	 38.35	0	2612205..2612603	-	132	16804574	atpI	lmo2536	-	hypothetical protein
2527	 40.18	0	2613435..2614574	-	379	16804575	-	lmo2537	-	hypothetical protein
2528	 38.89	0	2614692..2615321	-	209	16804576	upp	lmo2538	-	hypothetical protein
2529	 39.21	0	2615458..2616699	-	413	16804577	glyA	lmo2539	-	serine hydroxymethyltransferase
2530	 37.99	0	2616835..2617242	-	135	16804578	-	lmo2540	-	hypothetical protein
2531	 42.29	+1	2617239..2618276	-	345	16804579	-	lmo2541	-	hypothetical protein
2532	 38.50	0	2618577..2619428	-	283	16804580	-	lmo2542	-	hypothetical protein
2533	 42.62	+1	2619415..2620491	-	358	16804581	prfA	lmo2543	-	peptide chain release factor 1
2534	 34.55	-1	2620514..2621089	-	191	16804582	-	lmo2544	-	thymidine kinase
2535	 44.87	+2	2621201..2622067	-	288	16804583	thrB	lmo2545	-	homoserine kinase
2536	 42.33	+1	2622067..2623122	-	351	16804584	thrC	lmo2546	-	threonine synthase
2537	 40.71	0	2623125..2624411	-	428	16804585	hom	lmo2547	-	homoserine dehydrogenase
2538	 40.65	0	2624633..2624878	-	81	16804586	rpmE2	lmo2548	-	50S ribosomal protein L31 type B
2539	 30.82	-2	2624980..2625417	-	145	16804587	gtcA	lmo2549	-	wall teichoic acid glycosylation protein GtcA
2540	 33.86	-1	2625414..2626361	-	315	16804588	-	lmo2550	-	hypothetical protein
2541	 38.29	0	2626442..2627713	-	423	16804589	rho	lmo2551	-	transcription termination factor Rho
2542	 40.02	0	2627816..2629087	-	423	16804590	murZ	lmo2552	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2543	 37.91	0	2629208..2630278	-	356	16804591	-	lmo2553	-	hypothetical protein
2544	 35.77	0	2630285..2631310	-	341	16804592	-	lmo2554	-	hypothetical protein
2545	 37.15	0	2631303..2632586	-	427	16804593	-	lmo2555	-	hypothetical protein
2546	 41.05	0	2632907..2633761	-	284	16804594	fbaA	lmo2556	-	hypothetical protein
2547	 36.92	0	2633930..2634850	-	306	16804595	-	lmo2557	-	putative lipid kinase
2548	 39.83	0	2635167..2637920	+	917	16804596	ami	lmo2558	-	autolysin, amidase
2549	 39.02	0	2637964..2639562	-	532	16804597	pyrG	lmo2559	-	CTP synthetase
38.00	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.