IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2407	 36.34	0	2488379..2489209	-	276	16804455	-	lmo2417	-	hypothetical protein
2408	 39.56	0	2489274..2489948	-	224	16804456	-	lmo2418	-	hypothetical protein
2409	 40.86	0	2489945..2490967	-	340	16804457	-	lmo2419	-	hypothetical protein
2410	 28.04	-2	2491285..2491473	-	62	16804458	-	lmo2420	-	hypothetical protein
2411	 38.23	0	2491552..2492694	-	380	16804459	-	lmo2421	-	hypothetical protein
2412	 37.79	0	2492684..2493379	-	231	16804460	-	lmo2422	-	hypothetical protein
2413	 38.13	0	2493454..2494329	-	291	16804461	-	lmo2423	-	hypothetical protein
2414	 42.11	+1	2494522..2494806	-	94	16804462	-	lmo2424	-	hypothetical protein
2415	 35.98	0	2494891..2495268	-	125	16804463	-	lmo2425	-	hypothetical protein
2416	 38.70	0	2495309..2495662	-	117	16804464	-	lmo2426	-	hypothetical protein
2417	 38.78	0	2495818..2496993	-	391	16804465	-	lmo2427	-	hypothetical protein
2418	 36.84	0	2497069..2498238	-	389	16804466	-	lmo2428	-	hypothetical protein
2419	 41.16	0	2498381..2499172	-	263	16804467	-	lmo2429	-	hypothetical protein
2420	 43.72	+1	2499169..2500179	-	336	16804468	-	lmo2430	-	hypothetical protein
2421	 39.81	0	2500179..2501150	-	323	16804469	-	lmo2431	-	hypothetical protein
2422	 33.94	-1	2501306..2501470	+	54	16804470	-	lmo2432	-	hypothetical protein
2423	 40.45	0	2501603..2502361	+	252	16804471	-	lmo2433	-	hypothetical protein
2424	 39.25	0	2502401..2503804	-	467	16804472	-	lmo2434	-	hypothetical protein
2425	 32.68	-1	2503931..2504236	+	101	16804473	-	lmo2435	-	hypothetical protein
2426	 35.90	0	2504300..2505157	-	285	16804474	-	lmo2436	-	hypothetical protein
2427	 41.12	0	2505425..2505835	+	136	16804475	-	lmo2437	-	hypothetical protein
2428	 37.82	0	2505858..2506370	-	170	16804476	-	lmo2438	-	hypothetical protein
2429	 33.33	-1	2506494..2506835	+	113	16804477	-	lmo2439	-	hypothetical protein
2430	 35.94	0	2506867..2507250	-	127	16804478	-	lmo2440	-	hypothetical protein
2431	 38.57	0	2507306..2508202	-	298	16804479	-	lmo2441	-	hypothetical protein
2432	 37.37	0	2508247..2508816	-	189	16804480	-	lmo2442	-	hypothetical protein
2433	 30.00	-2	2508992..2509411	-	139	16804481	-	lmo2443	-	hypothetical protein
2434	 40.50	0	2510361..2514293	-	1310	16804482	-	lmo2444	-	hypothetical protein
2435	 36.32	0	2514308..2515210	-	300	16804483	-	lmo2445	-	hypothetical protein
2436	 39.41	0	2515312..2518587	-	1091	16804484	-	lmo2446	-	hypothetical protein
2437	 31.24	-2	2518971..2519879	+	302	16804485	-	lmo2447	-	hypothetical protein
2438	 39.14	0	2519935..2520399	-	154	16804486	smpB	lmo2448	-	SsrA-binding protein
2439	 41.06	0	2520415..2522796	-	793	16804487	-	lmo2449	-	hypothetical protein
2440	 39.76	0	2522830..2523576	-	248	16804488	-	lmo2450	-	hypothetical protein
2441	 39.74	0	2523835..2524068	-	77	16804489	secG	lmo2451	-	preprotein translocase subunit SecG
2442	 39.78	0	2524168..2524911	-	247	16804490	-	lmo2452	-	hypothetical protein
2443	 37.64	0	2525094..2525813	-	239	16804491	-	lmo2453	-	hypothetical protein
2444	 39.08	0	2525946..2526119	-	57	16804492	-	lmo2454	-	hypothetical protein
2445	 40.53	0	2526222..2527514	-	430	16804493	eno	lmo2455	-	hypothetical protein
2446	 40.64	0	2527650..2529182	-	510	16804494	pgm	lmo2456	-	phosphoglyceromutase
2447	 41.67	+1	2529184..2529939	-	251	16804495	tpi	lmo2457	-	hypothetical protein
2448	 39.63	0	2529985..2531175	-	396	16804496	pgk	lmo2458	-	phosphoglycerate kinase
2449	 38.97	0	2531310..2532320	-	336	16804497	gap	lmo2459	-	glyceraldehyde-3-phosphate dehydrogenase
2450	 42.69	+1	2532352..2533398	-	348	16804498	-	lmo2460	-	hypothetical protein
2451	 38.24	0	2533840..2535183	-	447	16804499	sigL	lmo2461	-	RNA polymerase factor sigma-54
2452	 39.16	0	2535342..2536268	-	308	16804500	-	lmo2462	-	hypothetical protein
2453	 40.27	0	2536347..2538581	-	744	16804501	-	lmo2463	-	hypothetical protein
2454	 34.48	-1	2538588..2539196	-	202	16804502	-	lmo2464	-	hypothetical protein
2455	 37.34	0	2539213..2539611	-	132	16804503	-	lmo2465	-	hypothetical protein
2456	 34.82	0	2539838..2540173	+	111	16804504	-	lmo2466	-	hypothetical protein
2457	 38.27	0	2540421..2541857	-	478	16804505	-	lmo2467	-	hypothetical protein
2458	 38.69	0	2542014..2542610	+	198	16804506	clpP	lmo2468	-	ATP-dependent Clp protease proteolytic subunit
2459	 38.07	0	2542658..2544049	-	463	16804507	-	lmo2469	-	hypothetical protein
2460	 33.68	-1	2544267..2545433	+	388	16804508	-	lmo2470	-	hypothetical protein
2461	 40.51	0	2545487..2546503	-	338	16804509	-	lmo2471	-	NADPH dehydrogenase NamA
2462	 40.53	0	2546530..2547501	-	323	16804510	-	lmo2472	-	hypothetical protein
2463	 40.56	0	2547509..2548477	-	322	16804511	-	lmo2473	-	hypothetical protein
2464	 39.73	0	2548479..2549354	-	291	16804512	-	lmo2474	-	hypothetical protein
2465	 39.17	0	2549462..2551192	-	576	16804513	-	lmo2475	-	hypothetical protein
2466	 39.64	0	2551234..2552295	-	353	16804514	-	lmo2476	-	hypothetical protein
2467	 39.02	0	2552312..2553295	-	327	16804515	galE	lmo2477	-	UDP-glucose 4-epimerase
2468	 41.56	+1	2553414..2554373	-	319	16804516	trxB	lmo2478	-	thioredoxin reductase
2469	 35.91	0	2554452..2555927	-	491	16804517	-	lmo2479	-	hypothetical protein
2470	 42.17	+1	2556013..2556510	-	165	16804518	-	lmo2480	-	hypothetical protein
2471	 37.00	0	2556514..2557167	-	217	16804519	-	lmo2481	-	pyrophosphatase PpaX
2472	 37.29	0	2557211..2558044	-	277	16804520	lgt	lmo2482	-	prolipoprotein diacylglyceryl transferase
2473	 38.23	0	2558130..2559068	-	312	16804521	-	lmo2483	-	HPr kinase/phosphorylase
2474	 34.18	-1	2559255..2559608	-	117	16804522	-	lmo2484	-	hypothetical protein
2475	 37.81	0	2559617..2559817	-	66	16804523	-	lmo2485	-	hypothetical protein
2476	 39.27	0	2559841..2561052	-	403	16804524	-	lmo2486	-	hypothetical protein
2477	 34.44	-1	2561120..2562382	-	420	16804525	-	lmo2487	-	hypothetical protein
2478	 38.77	0	2562591..2565461	-	956	16804526	uvrA	lmo2488	-	excinuclease ABC (subunit A)
2479	 39.96	0	2565469..2567445	-	658	16804527	uvrB	lmo2489	-	excinuclease ABC subunit B
2480	 37.08	0	2567696..2567935	-	79	16804528	-	lmo2490	-	hypothetical protein
2481	 37.19	0	2567956..2568603	-	215	16804529	-	lmo2491	-	hypothetical protein
2482	 35.40	0	2568625..2569011	-	128	16804530	-	lmo2492	-	hypothetical protein
2483	 38.24	0	2569117..2569422	-	101	16804531	-	lmo2493	-	hypothetical protein
2484	 37.58	0	2569690..2570349	-	219	16804532	-	lmo2494	-	hypothetical protein
2485	 40.13	0	2570362..2571141	-	259	16804533	-	lmo2495	-	hypothetical protein
2486	 38.11	0	2571156..2571971	-	271	16804534	-	lmo2496	-	hypothetical protein
2487	 42.71	+1	2571999..2572883	-	294	16804535	-	lmo2497	-	hypothetical protein
2488	 39.61	0	2572880..2573803	-	307	16804536	-	lmo2498	-	hypothetical protein
2489	 40.37	0	2573897..2574805	-	302	16804537	-	lmo2499	-	hypothetical protein
2490	 38.06	0	2575061..2576836	-	591	16804538	phoR	lmo2500	-	two-component sensor histidine kinase
2491	 35.44	0	2576836..2577546	-	236	16804539	phoP	lmo2501	-	two-component response phosphate regulator
2492	 37.41	0	2577696..2578871	-	391	16804540	-	lmo2502	-	hypothetical protein
2493	 35.61	0	2578899..2580347	-	482	16804541	-	lmo2503	-	hypothetical protein
2494	 37.53	0	2580470..2581780	-	436	16804542	-	lmo2504	-	hypothetical protein
2495	 37.73	0	2581900..2583105	-	401	16804543	spl	lmo2505	-	peptidoglycan lytic protein P45
2496	 37.18	0	2583181..2584065	-	294	16804544	ftsX	lmo2506	-	hypothetical protein
2497	 38.72	0	2584055..2584741	-	228	16804545	ftsE	lmo2507	-	hypothetical protein
2498	 38.19	0	2585245..2586108	-	287	16804546	-	lmo2508	-	hypothetical protein
2499	 39.02	0	2586114..2587097	-	327	16804547	prfB	lmo2509	-	peptide chain release factor 2
2500	 38.46	0	2587300..2589813	-	837	16804548	secA	lmo2510	-	preprotein translocase subunit SecA
2501	 33.87	-1	2590044..2590607	-	187	16804549	-	lmo2511	-	hypothetical protein
2502	 35.62	0	2590802..2591458	-	218	16804550	comFC	lmo2512	-	hypothetical protein
2503	 38.71	0	2591451..2592770	-	439	16804551	comFA	lmo2513	-	hypothetical protein
2504	 37.79	0	2592965..2593816	-	283	16804552	-	lmo2514	-	hypothetical protein
2505	 37.70	0	2593837..2594523	-	228	16804553	-	lmo2515	-	hypothetical protein
2506	 37.11	0	2594908..2595543	+	211	16804554	-	lmo2516	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.