IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2297	 36.79	0	2388179..2388583	-	134	16804345	-	lmo2306	-	hypothetical protein
2298	 42.08	+1	2388528..2388710	-	60	16804346	-	lmo2307	-	hypothetical protein
2299	 38.72	0	2388729..2389211	-	160	16804347	-	lmo2308	-	hypothetical protein
2300	 36.11	0	2389208..2389387	-	59	16804348	-	lmo2309	-	hypothetical protein
2301	 39.88	0	2389491..2389658	-	55	16804349	-	lmo2310	-	hypothetical protein
2302	 33.98	-1	2389655..2390116	-	153	16804350	-	lmo2311	-	hypothetical protein
2303	 32.70	-1	2390113..2390583	-	156	16804351	-	lmo2312	-	hypothetical protein
2304	 39.86	0	2390580..2391023	-	147	16804352	-	lmo2313	-	hypothetical protein
2305	 34.85	0	2391020..2391217	-	65	16804353	-	lmo2314	-	hypothetical protein
2306	 38.02	0	2391220..2391816	-	198	16804354	-	lmo2315	-	hypothetical protein
2307	 37.27	0	2391813..2392625	-	270	16804355	-	lmo2316	-	hypothetical protein
2308	 37.33	0	2392622..2393596	-	324	16804356	-	lmo2317	-	hypothetical protein
2309	 36.77	0	2393613..2394311	-	232	16804357	-	lmo2318	-	hypothetical protein
2310	 36.27	0	2394317..2394793	-	158	16804358	-	lmo2319	-	hypothetical protein
2311	 30.26	-2	2394790..2394984	-	64	16804359	-	lmo2320	-	hypothetical protein
2312	 38.10	0	2395290..2395478	-	62	16804360	-	lmo2321	-	hypothetical protein
2313	 34.72	0	2395586..2395801	-	71	16804361	-	lmo2322	-	gp44
2314	 37.45	0	2395798..2396331	-	177	16804362	-	lmo2323	-	hypothetical protein
2315	 33.08	-1	2396454..2397230	-	258	16804363	-	lmo2324	-	hypothetical protein
2316	 34.42	-1	2397212..2397487	-	91	16804364	-	lmo2325	-	hypothetical protein
2317	 31.56	-1	2397493..2397774	-	93	16804365	-	lmo2326	-	hypothetical protein
2318	 32.28	-1	2397800..2398084	-	94	16804366	-	lmo2327	-	hypothetical protein
2319	 33.74	-1	2398287..2398529	-	80	16804367	-	lmo2328	-	hypothetical protein
2320	 33.54	-1	2398685..2399161	+	158	16804368	-	lmo2329	-	hypothetical protein
2321	 31.20	-2	2399542..2400243	+	233	16804369	-	lmo2330	-	hypothetical protein
2322	 30.10	-2	2400264..2400944	+	226	16804370	-	lmo2331	-	hypothetical protein
2323	 33.63	-1	2401008..2402366	+	452	16804371	int	lmo2332	-	putative integrase
2324	 34.20	-1	2402888..2403235	-	115	16804372	-	lmo2334	-	hypothetical protein
2325	 39.34	0	2403341..2405239	-	632	16804373	fruA	lmo2335	-	hypothetical protein
2326	 37.66	0	2405241..2406164	-	307	16804374	fruB	lmo2336	-	fructose-1-phosphate kinase
2327	 34.00	-1	2406161..2406913	-	250	16804375	-	lmo2337	-	hypothetical protein
2328	 34.99	0	2407128..2408453	+	441	16804376	pepC	lmo2338	-	aminopeptidase C
2329	 40.32	0	2408450..2408893	-	147	16804377	-	lmo2339	-	hypothetical protein
2330	 39.91	0	2408967..2409878	-	303	16804378	-	lmo2340	-	hypothetical protein
2331	 41.38	+1	2409875..2410993	-	372	16804379	-	lmo2341	-	hypothetical protein
2332	 42.17	+1	2411126..2411827	-	233	16804380	-	lmo2342	-	hypothetical protein
2333	 42.86	+1	2411900..2413222	-	440	16804381	-	lmo2343	-	hypothetical protein
2334	 38.58	0	2413219..2413485	-	88	16804382	-	lmo2344	-	hypothetical protein
2335	 41.77	+1	2413478..2414473	-	331	16804383	-	lmo2345	-	hypothetical protein
2336	 40.51	0	2414470..2415249	-	259	16804384	-	lmo2346	-	hypothetical protein
2337	 41.10	0	2415246..2415953	-	235	16804385	-	lmo2347	-	hypothetical protein
2338	 38.63	0	2415967..2416683	-	238	16804386	-	lmo2348	-	hypothetical protein
2339	 36.42	0	2416705..2417514	-	269	16804387	-	lmo2349	-	hypothetical protein
2340	 43.39	+1	2417531..2418067	-	178	16804388	-	lmo2350	-	hypothetical protein
2341	 40.84	0	2418083..2418628	-	181	16804389	-	lmo2351	-	hypothetical protein
2342	 39.56	0	2418871..2419770	+	299	16804390	-	lmo2352	-	hypothetical protein
2343	 37.94	0	2419797..2421749	-	650	16804391	-	lmo2353	-	hypothetical protein
2344	 42.46	+1	2421878..2423476	-	532	16804392	-	lmo2354	-	hypothetical protein
2345	 39.77	0	2423480..2424721	-	413	16804393	-	lmo2355	-	hypothetical protein
2346	 33.17	-1	2424922..2425533	-	203	16804394	-	lmo2356	-	hypothetical protein
2347	 32.02	-1	2425723..2426253	-	176	16804395	-	lmo2357	-	hypothetical protein
2348	 37.57	0	2426270..2427001	-	243	16804396	-	lmo2358	-	hypothetical protein
2349	 37.35	0	2427045..2427890	-	281	16804397	-	lmo2359	-	hypothetical protein
2350	 39.98	0	2428010..2430793	-	927	16804398	-	lmo2360	-	transmembrane protein
2351	 38.22	0	2430826..2431296	-	156	16804399	-	lmo2361	-	hypothetical protein
2352	 40.35	0	2431688..2433211	+	507	16804400	-	lmo2362	-	hypothetical protein
2353	 42.44	+1	2433224..2434618	+	464	16804401	-	lmo2363	-	hypothetical protein
2354	 37.92	0	2434627..2434866	-	79	16804402	-	lmo2364	-	hypothetical protein
2355	 35.92	0	2435023..2436141	-	372	16804403	-	lmo2365	-	hypothetical protein
2356	 41.37	+1	2443368..2444126	-	252	16804404	-	lmo2366	-	hypothetical protein
2357	 39.84	0	2444231..2445583	-	450	16804405	pgi	lmo2367	-	glucose-6-phosphate isomerase
2358	 39.95	0	2445685..2446092	-	135	16804406	-	lmo2368	-	hypothetical protein
2359	 34.75	0	2446240..2446593	-	117	16804407	-	lmo2369	-	general stress protein 13
2360	 38.82	0	2446747..2447913	+	388	16804408	-	lmo2370	-	hypothetical protein
2361	 36.87	0	2448052..2449155	+	367	16804409	-	lmo2371	-	hypothetical protein
2362	 42.29	+1	2449155..2449835	+	226	16804410	-	lmo2372	-	hypothetical protein
2363	 38.10	0	2449878..2450192	-	104	16804411	-	lmo2373	-	hypothetical protein
2364	 40.97	0	2450437..2451798	+	453	16804412	-	lmo2374	-	aspartate kinase
2365	 35.10	0	2451840..2452235	-	131	16804413	-	lmo2375	-	hypothetical protein
2366	 44.62	+1	2452322..2452906	-	194	16804414	-	lmo2376	-	hypothetical protein
2367	 41.67	+1	2453138..2454349	+	403	16804415	-	lmo2377	-	hypothetical protein
2368	 40.10	0	2454695..2457103	+	802	16804416	-	lmo2378	-	monovalent cation/H+ antiporter subunit A
2369	 39.44	0	2457087..2457512	+	141	16804417	-	lmo2379	-	putative monovalent cation/H+ antiporter subunit B
2370	 41.67	+1	2457512..2457859	+	115	16804418	-	lmo2380	-	putative monovalent cation/H+ antiporter subunit C
2371	 39.46	0	2457852..2459336	+	494	16804419	-	lmo2381	-	putative monovalent cation/H+ antiporter subunit D
2372	 38.12	0	2459343..2459822	+	159	16804420	-	lmo2382	-	putative monovalent cation/H+ antiporter subunit E
2373	 37.50	0	2459819..2460106	+	95	16804421	-	lmo2383	-	putative monovalent cation/H+ antiporter subunit F
2374	 40.74	0	2460090..2460683	+	197	16804422	-	lmo2384	-	putative monovalent cation/H+ antiporter subunit G
2375	 37.90	0	2460720..2461091	-	123	16804423	-	lmo2385	-	hypothetical protein
2376	 39.24	0	2461219..2461692	+	157	16804424	-	lmo2386	-	hypothetical protein
2377	 38.39	0	2461803..2463029	+	408	16804425	-	lmo2387	-	hypothetical protein
2378	 37.48	0	2463066..2463884	-	272	16804426	-	lmo2388	-	hypothetical protein
2379	 39.77	0	2463969..2465180	-	403	16804427	-	lmo2389	-	hypothetical protein
2380	 41.27	0	2465630..2466625	+	331	16804428	-	lmo2390	-	hypothetical protein
2381	 42.22	+1	2466713..2467342	+	209	16804429	-	lmo2391	-	hypothetical protein
2382	 38.89	0	2467388..2467621	-	77	16804430	-	lmo2392	-	hypothetical protein
2383	 42.81	+1	2467643..2467969	-	108	16804431	-	lmo2393	-	hypothetical protein
2384	 46.99	+2	2468210..2468392	-	60	16804432	-	lmo2394	-	hypothetical protein
2385	 45.91	+2	2468545..2468703	-	52	16804433	-	lmo2395	-	hypothetical protein
2386	 37.65	0	2469093..2471915	+	940	16804434	-	lmo2396	-	hypothetical protein
2387	 35.86	0	2472089..2472325	+	78	16804435	-	lmo2397	-	hypothetical protein
2388	 43.31	+1	2472438..2472938	+	166	16804436	ltrC	lmo2398	-	hypothetical protein
2389	 40.96	0	2472963..2474273	-	436	16804437	-	lmo2399	-	hypothetical protein
2390	 39.86	0	2474309..2474752	-	147	16804438	-	lmo2400	-	hypothetical protein
2391	 40.49	0	2474801..2475568	-	255	16804439	-	lmo2401	-	hypothetical protein
2392	 36.23	0	2475588..2475863	-	91	16804440	-	lmo2402	-	hypothetical protein
2393	 41.38	+1	2475860..2477251	-	463	16804441	-	lmo2403	-	hypothetical protein
2394	 43.93	+1	2477385..2478224	+	279	16804442	-	lmo2404	-	hypothetical protein
2395	 39.07	0	2478225..2478590	+	121	16804443	-	lmo2405	-	hypothetical protein
2396	 42.70	+1	2478623..2479465	-	280	16804444	-	lmo2406	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.