IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2253	 37.98	0	2348604..2349356	-	250	16804301	-	lmo2262	-	hypothetical protein
2254	 39.24	0	2349475..2350320	+	281	16804302	-	lmo2263	-	hypothetical protein
2255	 34.55	-1	2350398..2351300	-	300	16804303	-	lmo2264	-	hypothetical protein
2256	 31.68	-1	2351384..2351746	-	120	16804304	-	lmo2265	-	hypothetical protein
2257	 36.63	0	2351767..2352615	-	282	16804305	-	lmo2266	-	hypothetical protein
2258	 34.95	0	2352616..2356323	-	1235	16804306	-	lmo2267	-	hypothetical protein
2259	 35.09	0	2356325..2359798	-	1157	16804307	addB	lmo2268	-	hypothetical protein
2260	 34.60	-1	2359948..2360184	-	78	16804308	-	lmo2269	-	hypothetical protein
2261	 29.39	-2	2360435..2360713	+	92	16804309	comK'	lmo2270	-	hypothetical protein
2262	 28.63	-2	2360908..2361141	-	77	16804310	-	lmo2271	-	hypothetical protein
2263	 33.81	-1	2361582..2361791	+	69	16804311	-	lmo2272	-	hypothetical protein
2264	 33.07	-1	2361897..2362274	+	125	16804312	-	lmo2273	-	protein gp30
2265	 31.91	-1	2362306..2362656	+	116	16804313	-	lmo2274	-	protein gp29
2266	 31.11	-2	2362661..2363110	+	149	16804314	-	lmo2275	-	protein gp28
2267	 34.34	-1	2363135..2363632	+	165	16804315	-	lmo2276	-	hypothetical protein
2268	 29.17	-2	2363709..2364260	-	183	16804316	-	lmo2277	-	hypothetical protein
2269	 39.01	0	2364754..2365599	-	281	16804317	lysA	lmo2278	-	L-alanoyl-D-glutamate peptidase
2270	 41.49	+1	2365599..2365880	-	93	16804318	-	lmo2279	-	holin
2271	 34.70	0	2365893..2366258	-	121	16804319	-	lmo2280	-	protein gp23
2272	 33.33	-1	2366288..2366446	-	52	16804320	-	lmo2281	-	protein gp22
2273	 33.33	-1	2366451..2366768	-	105	16804321	-	lmo2282	-	protein gp21
2274	 37.15	0	2366780..2367853	-	357	16804322	-	lmo2283	-	protein gp20
2275	 35.57	0	2367853..2368881	-	342	16804323	-	lmo2284	-	protein gp19
2276	 34.31	-1	2368882..2369907	-	341	16804324	-	lmo2285	-	protein gp18
2277	 37.36	0	2369916..2370734	-	272	16804325	-	lmo2286	-	protein gp17
2278	 39.93	0	2370736..2376099	-	1787	16804326	-	lmo2287	-	putative tape-measure
2279	 34.82	0	2376110..2376715	-	201	16804327	-	lmo2288	-	protein gp15
2280	 31.44	-1	2376721..2377143	-	140	16804328	-	lmo2289	-	protein gp14
2281	 42.34	+1	2377198..2377530	-	110	16804329	-	lmo2290	-	protein gp13
2282	 44.37	+1	2377460..2377894	-	144	16804330	-	lmo2291	-	major tail shaft protein
2283	 34.56	-1	2377897..2378304	-	135	16804331	-	lmo2292	-	protein gp11
2284	 40.41	0	2378304..2378642	-	112	16804332	-	lmo2293	-	protein gp10
2285	 35.81	0	2378642..2379004	-	120	16804333	-	lmo2294	-	protein gp9
2286	 40.91	0	2379004..2379399	-	131	16804334	-	lmo2295	-	protein gp8
2287	 41.32	0	2379418..2380419	-	333	16804335	-	lmo2296	-	hypothetical protein
2288	 38.07	0	2380419..2381009	-	196	16804336	-	lmo2297	-	putative scaffolding protein
2289	 39.82	0	2381088..2382227	-	379	16804337	-	lmo2298	-	protein gp4
2290	 38.05	0	2382228..2383988	-	586	16804338	-	lmo2299	-	putative portal protein
2291	 37.24	0	2384001..2385332	-	443	16804339	-	lmo2300	-	putative terminase large subunit from bacteriophage A118
2292	 35.72	0	2385301..2386095	-	264	16804340	-	lmo2301	-	hypothetical protein
2293	 28.15	-2	2386141..2386680	-	179	16804341	-	lmo2302	-	hypothetical protein
2294	 34.48	-1	2387046..2387480	-	144	16804342	-	lmo2303	-	protein gp66
2295	 27.27	-2	2387499..2387663	-	54	16804343	-	lmo2304	-	bacteriophage A118 gp65 protein
2296	 34.38	-1	2387792..2388175	-	127	16804344	-	lmo2305	-	hypothetical protein
2297	 36.79	0	2388179..2388583	-	134	16804345	-	lmo2306	-	hypothetical protein
2298	 42.08	+1	2388528..2388710	-	60	16804346	-	lmo2307	-	hypothetical protein
2299	 38.72	0	2388729..2389211	-	160	16804347	-	lmo2308	-	hypothetical protein
2300	 36.11	0	2389208..2389387	-	59	16804348	-	lmo2309	-	hypothetical protein
2301	 39.88	0	2389491..2389658	-	55	16804349	-	lmo2310	-	hypothetical protein
2302	 33.98	-1	2389655..2390116	-	153	16804350	-	lmo2311	-	hypothetical protein
2303	 32.70	-1	2390113..2390583	-	156	16804351	-	lmo2312	-	hypothetical protein
2304	 39.86	0	2390580..2391023	-	147	16804352	-	lmo2313	-	hypothetical protein
2305	 34.85	0	2391020..2391217	-	65	16804353	-	lmo2314	-	hypothetical protein
2306	 38.02	0	2391220..2391816	-	198	16804354	-	lmo2315	-	hypothetical protein
2307	 37.27	0	2391813..2392625	-	270	16804355	-	lmo2316	-	hypothetical protein
2308	 37.33	0	2392622..2393596	-	324	16804356	-	lmo2317	-	hypothetical protein
2309	 36.77	0	2393613..2394311	-	232	16804357	-	lmo2318	-	hypothetical protein
2310	 36.27	0	2394317..2394793	-	158	16804358	-	lmo2319	-	hypothetical protein
2311	 30.26	-2	2394790..2394984	-	64	16804359	-	lmo2320	-	hypothetical protein
2312	 38.10	0	2395290..2395478	-	62	16804360	-	lmo2321	-	hypothetical protein
2313	 34.72	0	2395586..2395801	-	71	16804361	-	lmo2322	-	gp44
2314	 37.45	0	2395798..2396331	-	177	16804362	-	lmo2323	-	hypothetical protein
2315	 33.08	-1	2396454..2397230	-	258	16804363	-	lmo2324	-	hypothetical protein
2316	 34.42	-1	2397212..2397487	-	91	16804364	-	lmo2325	-	hypothetical protein
2317	 31.56	-1	2397493..2397774	-	93	16804365	-	lmo2326	-	hypothetical protein
2318	 32.28	-1	2397800..2398084	-	94	16804366	-	lmo2327	-	hypothetical protein
2319	 33.74	-1	2398287..2398529	-	80	16804367	-	lmo2328	-	hypothetical protein
2320	 33.54	-1	2398685..2399161	+	158	16804368	-	lmo2329	-	hypothetical protein
2321	 31.20	-2	2399542..2400243	+	233	16804369	-	lmo2330	-	hypothetical protein
2322	 30.10	-2	2400264..2400944	+	226	16804370	-	lmo2331	-	hypothetical protein
2323	 33.63	-1	2401008..2402366	+	452	16804371	int	lmo2332	-	putative integrase
2324	 34.20	-1	2402888..2403235	-	115	16804372	-	lmo2334	-	hypothetical protein
2325	 39.34	0	2403341..2405239	-	632	16804373	fruA	lmo2335	-	hypothetical protein
2326	 37.66	0	2405241..2406164	-	307	16804374	fruB	lmo2336	-	fructose-1-phosphate kinase
2327	 34.00	-1	2406161..2406913	-	250	16804375	-	lmo2337	-	hypothetical protein
2328	 34.99	0	2407128..2408453	+	441	16804376	pepC	lmo2338	-	aminopeptidase C
2329	 40.32	0	2408450..2408893	-	147	16804377	-	lmo2339	-	hypothetical protein
2330	 39.91	0	2408967..2409878	-	303	16804378	-	lmo2340	-	hypothetical protein
2331	 41.38	+1	2409875..2410993	-	372	16804379	-	lmo2341	-	hypothetical protein
2332	 42.17	+1	2411126..2411827	-	233	16804380	-	lmo2342	-	hypothetical protein
2333	 42.86	+1	2411900..2413222	-	440	16804381	-	lmo2343	-	hypothetical protein
2334	 38.58	0	2413219..2413485	-	88	16804382	-	lmo2344	-	hypothetical protein
2335	 41.77	+1	2413478..2414473	-	331	16804383	-	lmo2345	-	hypothetical protein
2336	 40.51	0	2414470..2415249	-	259	16804384	-	lmo2346	-	hypothetical protein
2337	 41.10	0	2415246..2415953	-	235	16804385	-	lmo2347	-	hypothetical protein
2338	 38.63	0	2415967..2416683	-	238	16804386	-	lmo2348	-	hypothetical protein
2339	 36.42	0	2416705..2417514	-	269	16804387	-	lmo2349	-	hypothetical protein
2340	 43.39	+1	2417531..2418067	-	178	16804388	-	lmo2350	-	hypothetical protein
2341	 40.84	0	2418083..2418628	-	181	16804389	-	lmo2351	-	hypothetical protein
2342	 39.56	0	2418871..2419770	+	299	16804390	-	lmo2352	-	hypothetical protein
2343	 37.94	0	2419797..2421749	-	650	16804391	-	lmo2353	-	hypothetical protein
2344	 42.46	+1	2421878..2423476	-	532	16804392	-	lmo2354	-	hypothetical protein
2345	 39.77	0	2423480..2424721	-	413	16804393	-	lmo2355	-	hypothetical protein
2346	 33.17	-1	2424922..2425533	-	203	16804394	-	lmo2356	-	hypothetical protein
2347	 32.02	-1	2425723..2426253	-	176	16804395	-	lmo2357	-	hypothetical protein
2348	 37.57	0	2426270..2427001	-	243	16804396	-	lmo2358	-	hypothetical protein
2349	 37.35	0	2427045..2427890	-	281	16804397	-	lmo2359	-	hypothetical protein
2350	 39.98	0	2428010..2430793	-	927	16804398	-	lmo2360	-	transmembrane protein
2351	 38.22	0	2430826..2431296	-	156	16804399	-	lmo2361	-	hypothetical protein
2352	 40.35	0	2431688..2433211	+	507	16804400	-	lmo2362	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.