IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.00   STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
180	 39.75	0	182267..185569	+	1100	16802228	-	lmo0182	-	hypothetical protein
181	 40.27	0	185572..187863	+	763	16802229	-	lmo0183	-	hypothetical protein
182	 38.87	0	187867..189528	+	553	16802230	-	lmo0184	-	hypothetical protein
183	 40.18	0	189625..190398	+	257	16802231	-	lmo0185	-	hypothetical protein
184	 36.02	0	190690..191916	+	408	16802232	-	lmo0186	-	hypothetical protein
185	 40.97	0	192018..192593	+	191	16802233	-	lmo0187	-	hypothetical protein
186	 38.51	0	192586..193473	+	295	16802234	ksgA	lmo0188	-	dimethyladenosine transferase
187	 34.88	0	193593..193850	+	85	16802235	-	lmo0189	-	hypothetical protein
188	 41.38	+1	193989..194870	+	293	16802236	-	lmo0190	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
189	 39.57	0	194892..195629	+	245	16802237	-	lmo0191	-	hypothetical protein
190	 39.80	0	195793..196611	+	272	16802238	-	lmo0192	-	purine operon repressor
191	 36.87	0	196786..197463	+	225	16802239	-	lmo0193	-	hypothetical protein
192	 40.26	0	197512..198204	+	230	16802240	-	lmo0194	-	ABC transporter, ATP-binding protein
193	 38.30	0	198201..199409	+	402	16802241	-	lmo0195	-	hypothetical protein
194	 42.39	+1	200094..200402	+	102	16802242	-	lmo0196	-	regulatory protein SpoVG
195	 40.45	0	200522..200830	+	102	16802243	-	lmo0197	-	regulatory protein SpoVG
196	 38.79	0	201217..202590	+	457	16802244	gcaD	lmo0198	-	hypothetical protein
197	 38.98	0	202641..203597	+	318	16802245	prs	lmo0199	-	phosphoribosyl pyrophosphate synthetase
198	 33.33	-1	203640..204353	-	237	16802246	prfA	lmo0200	-	listeriolysin positive regulatory protein
199	 35.32	0	204624..205577	-	317	16802247	plcA	lmo0201	-	phosphatidylinositol-specific phospholipase c
200	 35.97	0	205819..207408	+	529	16802248	hly	lmo0202	-	listeriolysin O precursor
201	 38.42	0	207739..209271	+	510	16802249	mpl	lmo0203	-	Zinc metalloproteinase precursor
202	 40.05	0	209470..211389	+	639	16802250	actA	lmo0204	-	actin-assembly inducing protein precursor
203	 35.52	0	211425..212294	+	289	16802251	plcB	lmo0205	-	phospholipase C
204	 30.56	-2	212366..212689	+	107	16802252	-	lmo0206	-	hypothetical protein
205	 33.77	-1	212824..213285	+	153	16802253	-	lmo0207	-	hypothetical protein
206	 40.54	0	213336..213668	-	110	16802254	-	lmo0208	-	hypothetical protein
207	 37.48	0	213735..214409	-	224	16802255	-	lmo0209	-	hypothetical protein
208	 39.49	0	214486..215427	-	313	16802256	ldh	lmo0210	-	L-lactate dehydrogenase
209	 38.94	0	215721..216344	+	207	16802257	ctc	lmo0211	-	50S ribosomal protein L25/general stress protein Ctc
210	 37.78	0	216434..217018	+	194	16802258	-	lmo0212	-	hypothetical protein
211	 37.43	0	217125..217685	+	186	16802259	pth	lmo0213	-	peptidyl-tRNA hydrolase
212	 40.59	0	217800..221339	+	1179	16802260	mfd	lmo0214	-	transcription-repair coupling factor
213	 42.08	+1	221370..222959	+	529	16802261	-	lmo0215	-	hypothetical protein
214	 36.56	0	222983..223261	+	92	16802262	-	lmo0216	-	hypothetical protein
215	 36.69	0	223490..223876	+	128	16802263	-	lmo0217	-	hypothetical protein
216	 39.86	0	224027..224455	+	142	16802264	-	lmo0218	-	hypothetical protein
217	 38.32	0	224562..226508	+	648	16802265	-	lmo0219	-	hypothetical protein
218	 41.81	+1	226854..228929	+	691	16802266	ftsH	lmo0220	-	hypothetical protein
219	 40.64	0	229045..229824	+	259	16802267	-	lmo0221	-	pantothenate kinase
220	 41.36	0	229840..230724	+	294	16802268	-	lmo0222	-	hypothetical protein
221	 42.07	+1	230840..231766	+	308	16802269	cysK	lmo0223	-	hypothetical protein
222	 42.40	+1	232662..233477	+	271	16802270	sul	lmo0224	-	hypothetical protein
223	 36.27	0	233491..233865	+	124	16802271	folA	lmo0225	-	hypothetical protein
224	 36.88	0	233858..234337	+	159	16802272	folK	lmo0226	-	hypothetical protein
225	 42.67	+1	234414..235409	+	331	16802273	-	lmo0227	-	hypothetical protein
226	 39.41	0	235524..237020	+	498	16802274	lysS	lmo0228	-	lysyl-tRNA synthetase
227	 30.94	-2	248555..249013	+	152	16802275	-	lmo0229	-	hypothetical protein
228	 38.92	0	249026..249544	+	172	16802276	-	lmo0230	-	hypothetical protein
229	 36.75	0	249541..250563	+	340	16802277	-	lmo0231	-	ATP:guanido phosphotransferase
230	 40.52	0	250592..253054	+	820	16802278	clpC	lmo0232	-	endopeptidase Clp ATP-binding chain C
231	 41.48	+1	253200..254573	+	457	16802279	-	lmo0233	-	DNA repair protein RadA
232	 35.57	0	254707..255780	+	357	16802280	-	lmo0234	-	hypothetical protein
233	 42.78	+1	255800..256498	+	232	16802281	ispD	lmo0235	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
234	 41.77	+1	256491..256964	+	157	16802282	ispF	lmo0236	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
235	 37.87	0	256983..258458	+	491	16802283	gltX	lmo0237	-	hypothetical protein
236	 44.88	+2	258856..259470	+	204	16802284	cysE	lmo0238	-	hypothetical protein
237	 40.40	0	259477..260892	+	471	16802285	cysS	lmo0239	-	cysteinyl-tRNA synthetase
238	 41.61	+1	260896..261306	+	136	16802286	-	lmo0240	-	hypothetical protein
239	 41.01	0	261306..262061	+	251	16802287	-	lmo0241	-	hypothetical protein
240	 40.94	0	262064..262576	+	170	16802288	-	lmo0242	-	hypothetical protein
241	 38.28	0	262657..263262	+	201	16802289	sigH	lmo0243	-	RNA polymerase factor sigma-70
242	 39.33	0	263366..263515	+	49	16802290	rpmG	lmo0244	-	50S ribosomal protein L33
243	 31.11	-2	263535..263714	+	59	16802291	secE	lmo0245	-	preprotein translocase subunit SecE
244	 38.76	0	263844..264377	+	177	16802292	nusG	lmo0246	-	transcription antitermination protein NusG
245	 35.88	0	264432..264902	+	156	16802293	-	lmo0247	-	hypothetical protein
246	 40.85	0	265029..265454	+	141	16802294	rplK	lmo0248	-	50S ribosomal protein L11
247	 39.86	0	265494..266183	+	229	16802295	rplA	lmo0249	-	50S ribosomal protein L1
248	 40.52	0	266431..266931	+	166	16802296	rplJ	lmo0250	-	50S ribosomal protein L10
249	 38.57	0	267010..267372	+	120	16802297	rplL	lmo0251	-	50S ribosomal protein L7/L12
250	 32.30	-1	267530..267916	+	128	16802298	-	lmo0252	-	hypothetical protein
251	 32.28	-1	267909..268949	+	346	16802299	-	lmo0253	-	hypothetical protein
252	 36.65	0	269067..269729	+	220	16802300	-	lmo0254	-	hypothetical protein
253	 33.93	-1	269754..270257	+	167	16802301	-	lmo0255	-	hypothetical protein
254	 36.96	0	270372..270977	+	201	16802302	-	lmo0256	-	hypothetical protein
255	 39.95	0	271324..272502	+	392	16802303	-	lmo0257	-	hypothetical protein
256	 41.88	+1	273003..276557	+	1184	16802304	rpoB	lmo0258	-	DNA-directed RNA polymerase subunit beta
257	 41.35	0	276728..280333	+	1201	16802305	rpoC	lmo0259	-	DNA-directed RNA polymerase subunit beta'
258	 41.03	0	280410..280955	+	181	16802306	-	lmo0260	-	hypothetical protein
259	 41.00	0	281021..282481	+	486	16802307	-	lmo0261	-	hypothetical protein
260	 36.39	0	282755..284227	+	490	16802308	inlG	lmo0262	-	internalin G
261	 38.55	0	284365..286011	+	548	16802309	inlH	lmo0263	-	internalin H
262	 35.07	0	286219..287718	+	499	16802310	inlE	lmo0264	-	internalin E
263	 37.98	0	287853..288992	+	379	16802311	-	lmo0265	-	succinyl-diaminopimelate desuccinylase
264	 37.65	0	289139..289555	+	138	16802312	-	lmo0266	-	hypothetical protein
265	 43.02	+1	289562..290521	+	319	16802313	-	lmo0267	-	hypothetical protein
266	 41.04	0	290593..291228	+	211	16802314	-	lmo0268	-	hypothetical protein
267	 41.71	+1	291312..293198	+	628	16802315	-	lmo0269	-	hypothetical protein
268	 38.57	0	293212..293841	-	209	16802316	-	lmo0270	-	hypothetical protein
269	 40.78	0	293845..295281	-	478	16802317	-	lmo0271	-	hypothetical protein
270	 36.90	0	295401..296213	-	270	16802318	-	lmo0272	-	hypothetical protein
271	 38.10	0	296349..296852	+	167	16802319	-	lmo0273	-	hypothetical protein
272	 32.88	-1	296889..297551	-	220	16802320	-	lmo0274	-	hypothetical protein
273	 37.25	0	297810..298652	-	280	16802321	-	lmo0275	-	hypothetical protein
274	 37.59	0	298669..299490	-	273	16802322	-	lmo0276	-	hypothetical protein
275	 38.99	0	299607..300578	+	323	16802323	-	lmo0277	-	hypothetical protein
276	 38.24	0	300617..301717	-	366	16802324	-	lmo0278	-	hypothetical protein
277	 39.62	0	302008..304140	+	710	16802325	-	lmo0279	-	anaerobic ribonucleoside triphosphate reductase
278	 44.93	+2	304133..304684	+	183	16802326	-	lmo0280	-	hypothetical protein
279	 32.29	-1	304942..305613	-	223	16802327	-	lmo0281	-	hypothetical protein
38.00	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.