IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2198	 38.35	0	2297304..2297981	-	225	16804246	-	lmo2207	-	hypothetical protein
2199	 36.06	0	2298093..2298863	-	256	16804247	-	lmo2208	-	hypothetical protein
2200	 36.39	0	2298927..2299712	-	261	16804248	-	lmo2209	-	hypothetical protein
2201	 32.75	-1	2299833..2300177	-	114	16804249	-	lmo2210	-	hypothetical protein
2202	 38.92	0	2300334..2301263	-	309	16804250	hemH	lmo2211	-	ferrochelatase
2203	 37.57	0	2301260..2302321	-	353	16804251	hemE	lmo2212	-	uroporphyrinogen decarboxylase
2204	 34.52	-1	2302518..2303021	+	167	16804252	-	lmo2213	-	hypothetical protein
2205	 35.78	0	2303060..2304283	-	407	16804253	-	lmo2214	-	hypothetical protein
2206	 35.99	0	2304267..2305019	-	250	16804254	-	lmo2215	-	hypothetical protein
2207	 37.83	0	2305180..2305602	+	140	16804255	-	lmo2216	-	hypothetical protein
2208	 35.54	0	2305632..2305994	+	120	16804256	-	lmo2217	-	hypothetical protein
2209	 31.67	-1	2306177..2306716	+	179	16804257	-	lmo2218	-	hypothetical protein
2210	 36.17	0	2306833..2307714	+	293	16804258	-	lmo2219	-	hypothetical protein
2211	 37.15	0	2307755..2308696	-	313	16804259	-	lmo2220	-	3'-5' exoribonuclease YhaM
2212	 34.51	-1	2308741..2311464	-	907	16804260	-	lmo2221	-	hypothetical protein
2213	 37.54	0	2311461..2312696	-	411	16804261	-	lmo2222	-	hypothetical protein
2214	 34.75	0	2312839..2313192	-	117	16804262	-	lmo2223	-	hypothetical protein
2215	 35.27	0	2313274..2314407	-	377	16804263	-	lmo2224	-	hypothetical protein
2216	 39.04	0	2314511..2315878	-	455	16804264	fumC	lmo2225	-	fumarate hydratase
2217	 37.99	0	2315948..2316742	-	264	16804265	-	lmo2226	-	hypothetical protein
2218	 35.65	0	2316739..2317644	-	301	16804266	-	lmo2227	-	hypothetical protein
2219	 27.78	-2	2317644..2317841	-	65	16804267	-	lmo2228	-	hypothetical protein
2220	 38.74	0	2317950..2320094	-	714	16804268	-	lmo2229	-	hypothetical protein
2221	 36.62	0	2320416..2320841	+	141	16804269	-	lmo2230	-	hypothetical protein
2222	 36.55	0	2320906..2321775	+	289	16804270	-	lmo2231	-	hypothetical protein
2223	 37.85	0	2322031..2323335	+	434	16804271	-	lmo2232	-	hypothetical protein
2224	 39.02	0	2323375..2324253	-	292	16804272	-	lmo2233	-	hypothetical protein
2225	 42.11	+1	2324554..2325408	+	284	16804273	-	lmo2234	-	hypothetical protein
2226	 42.99	+1	2325477..2327402	+	641	16804274	-	lmo2235	-	hypothetical protein
2227	 38.62	0	2327461..2328330	+	289	16804275	-	lmo2236	-	shikimate 5-dehydrogenase
2228	 37.47	0	2328363..2329571	+	402	16804276	-	lmo2237	-	hypothetical protein
2229	 36.36	0	2329731..2330921	+	396	16804277	-	lmo2238	-	hypothetical protein
2230	 32.02	-1	2330959..2332023	-	354	16804278	-	lmo2239	-	hypothetical protein
2231	 34.13	-1	2332020..2332898	-	292	16804279	-	lmo2240	-	hypothetical protein
2232	 35.86	0	2332888..2333283	-	131	16804280	-	lmo2241	-	hypothetical protein
2233	 35.82	0	2333375..2333857	-	160	16804281	-	lmo2242	-	hypothetical protein
2234	 37.57	0	2334003..2334569	+	188	16804282	-	lmo2243	-	hypothetical protein
2235	 39.31	0	2334586..2335455	+	289	16804283	-	lmo2244	-	hypothetical protein
2236	 33.84	-1	2335468..2335860	-	130	16804284	-	lmo2245	-	hypothetical protein
2237	 39.73	0	2335862..2336518	-	218	16804285	-	lmo2246	-	hypothetical protein
2238	 39.32	0	2336515..2337399	-	294	16804286	-	lmo2247	-	hypothetical protein
2239	 33.66	-1	2337786..2338406	+	206	16804287	-	lmo2248	-	hypothetical protein
2240	 41.04	0	2338420..2339418	+	332	16804288	-	lmo2249	-	hypothetical protein
2241	 39.22	0	2339611..2341071	+	486	16804289	arpJ	lmo2250	-	hypothetical protein
2242	 41.18	0	2341064..2341789	+	241	16804290	-	lmo2251	-	hypothetical protein
2243	 37.25	0	2341865..2343013	+	382	16804291	-	lmo2252	-	aspartate aminotransferase
2244	 39.21	0	2343056..2343685	-	209	16804292	-	lmo2253	-	hypothetical protein
2245	 39.75	0	2343858..2345150	+	430	16804293	-	lmo2254	-	hypothetical protein
2246	 40.07	0	2345260..2345526	+	88	16804294	-	lmo2255	-	hypothetical protein
2247	 41.95	+1	2345567..2346088	-	173	16804295	-	lmo2256	-	hypothetical protein
2248	 30.43	-2	2346252..2346596	-	114	16804296	-	lmo2257	-	hypothetical protein
2249	 37.50	0	2346593..2346784	-	63	16804297	-	lmo2258	-	hypothetical protein
2250	 37.32	0	2346935..2347285	+	116	16804298	-	lmo2259	-	hypothetical protein
2251	 33.68	-1	2347276..2348151	-	291	16804299	-	lmo2260	-	hypothetical protein
2252	 39.48	0	2348231..2348539	-	102	16804300	-	lmo2261	-	hypothetical protein
2253	 37.98	0	2348604..2349356	-	250	16804301	-	lmo2262	-	hypothetical protein
2254	 39.24	0	2349475..2350320	+	281	16804302	-	lmo2263	-	hypothetical protein
2255	 34.55	-1	2350398..2351300	-	300	16804303	-	lmo2264	-	hypothetical protein
2256	 31.68	-1	2351384..2351746	-	120	16804304	-	lmo2265	-	hypothetical protein
2257	 36.63	0	2351767..2352615	-	282	16804305	-	lmo2266	-	hypothetical protein
2258	 34.95	0	2352616..2356323	-	1235	16804306	-	lmo2267	-	hypothetical protein
2259	 35.09	0	2356325..2359798	-	1157	16804307	addB	lmo2268	-	hypothetical protein
2260	 34.60	-1	2359948..2360184	-	78	16804308	-	lmo2269	-	hypothetical protein
2261	 29.39	-2	2360435..2360713	+	92	16804309	comK'	lmo2270	-	hypothetical protein
2262	 28.63	-2	2360908..2361141	-	77	16804310	-	lmo2271	-	hypothetical protein
2263	 33.81	-1	2361582..2361791	+	69	16804311	-	lmo2272	-	hypothetical protein
2264	 33.07	-1	2361897..2362274	+	125	16804312	-	lmo2273	-	protein gp30
2265	 31.91	-1	2362306..2362656	+	116	16804313	-	lmo2274	-	protein gp29
2266	 31.11	-2	2362661..2363110	+	149	16804314	-	lmo2275	-	protein gp28
2267	 34.34	-1	2363135..2363632	+	165	16804315	-	lmo2276	-	hypothetical protein
2268	 29.17	-2	2363709..2364260	-	183	16804316	-	lmo2277	-	hypothetical protein
2269	 39.01	0	2364754..2365599	-	281	16804317	lysA	lmo2278	-	L-alanoyl-D-glutamate peptidase
2270	 41.49	+1	2365599..2365880	-	93	16804318	-	lmo2279	-	holin
2271	 34.70	0	2365893..2366258	-	121	16804319	-	lmo2280	-	protein gp23
2272	 33.33	-1	2366288..2366446	-	52	16804320	-	lmo2281	-	protein gp22
2273	 33.33	-1	2366451..2366768	-	105	16804321	-	lmo2282	-	protein gp21
2274	 37.15	0	2366780..2367853	-	357	16804322	-	lmo2283	-	protein gp20
2275	 35.57	0	2367853..2368881	-	342	16804323	-	lmo2284	-	protein gp19
2276	 34.31	-1	2368882..2369907	-	341	16804324	-	lmo2285	-	protein gp18
2277	 37.36	0	2369916..2370734	-	272	16804325	-	lmo2286	-	protein gp17
2278	 39.93	0	2370736..2376099	-	1787	16804326	-	lmo2287	-	putative tape-measure
2279	 34.82	0	2376110..2376715	-	201	16804327	-	lmo2288	-	protein gp15
2280	 31.44	-1	2376721..2377143	-	140	16804328	-	lmo2289	-	protein gp14
2281	 42.34	+1	2377198..2377530	-	110	16804329	-	lmo2290	-	protein gp13
2282	 44.37	+1	2377460..2377894	-	144	16804330	-	lmo2291	-	major tail shaft protein
2283	 34.56	-1	2377897..2378304	-	135	16804331	-	lmo2292	-	protein gp11
2284	 40.41	0	2378304..2378642	-	112	16804332	-	lmo2293	-	protein gp10
2285	 35.81	0	2378642..2379004	-	120	16804333	-	lmo2294	-	protein gp9
2286	 40.91	0	2379004..2379399	-	131	16804334	-	lmo2295	-	protein gp8
2287	 41.32	0	2379418..2380419	-	333	16804335	-	lmo2296	-	hypothetical protein
2288	 38.07	0	2380419..2381009	-	196	16804336	-	lmo2297	-	putative scaffolding protein
2289	 39.82	0	2381088..2382227	-	379	16804337	-	lmo2298	-	protein gp4
2290	 38.05	0	2382228..2383988	-	586	16804338	-	lmo2299	-	putative portal protein
2291	 37.24	0	2384001..2385332	-	443	16804339	-	lmo2300	-	putative terminase large subunit from bacteriophage A118
2292	 35.72	0	2385301..2386095	-	264	16804340	-	lmo2301	-	hypothetical protein
2293	 28.15	-2	2386141..2386680	-	179	16804341	-	lmo2302	-	hypothetical protein
2294	 34.48	-1	2387046..2387480	-	144	16804342	-	lmo2303	-	protein gp66
2295	 27.27	-2	2387499..2387663	-	54	16804343	-	lmo2304	-	bacteriophage A118 gp65 protein
2296	 34.38	-1	2387792..2388175	-	127	16804344	-	lmo2305	-	hypothetical protein
2297	 36.79	0	2388179..2388583	-	134	16804345	-	lmo2306	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.