IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1956	 37.10	0	2039441..2039998	-	185	16804004	-	lmo1965	-	hypothetical protein
1957	 33.33	-1	2040274..2040933	+	219	16804005	-	lmo1966	-	hypothetical protein
1958	 38.83	0	2040911..2042110	+	399	16804006	-	lmo1967	-	hypothetical protein
1959	 37.10	0	2042157..2042900	-	247	16804007	-	lmo1968	-	hypothetical protein
1960	 37.44	0	2042913..2043521	-	202	16804008	-	lmo1969	-	hypothetical protein
1961	 38.67	0	2043540..2044457	-	305	16804009	-	lmo1970	-	hypothetical protein
1962	 37.51	0	2044481..2045749	-	422	16804010	ulaA	lmo1971	-	ascorbate-specific PTS system enzyme IIC
1963	 37.59	0	2045765..2046046	-	93	16804011	-	lmo1972	-	hypothetical protein
1964	 38.06	0	2046046..2046489	-	147	16804012	-	lmo1973	-	hypothetical protein
1965	 36.13	0	2046507..2047256	-	249	16804013	-	lmo1974	-	hypothetical protein
1966	 39.68	0	2047444..2048514	-	356	16804014	-	lmo1975	-	hypothetical protein
1967	 35.61	0	2048623..2049414	-	263	16804015	-	lmo1976	-	hypothetical protein
1968	 37.68	0	2049419..2050339	-	306	16804016	-	lmo1977	-	hypothetical protein
1969	 39.43	0	2050639..2052114	+	491	16804017	-	lmo1978	-	glucose-6-phosphate 1-dehydrogenase
1970	 35.19	0	2052233..2052664	+	143	16804018	-	lmo1979	-	hypothetical protein
1971	 34.78	0	2052696..2052833	+	45	16804019	-	lmo1980	-	hypothetical protein
1972	 39.09	0	2052816..2053301	-	161	16804020	-	lmo1981	-	hypothetical protein
1973	 37.88	0	2053274..2053801	-	175	16804021	-	lmo1982	-	hypothetical protein
1974	 43.66	+1	2054493..2056187	+	564	16804022	ilvD	lmo1983	-	dihydroxy-acid dehydratase
1975	 43.79	+1	2056205..2057926	+	573	16804023	ilvB	lmo1984	-	hypothetical protein
1976	 43.70	+1	2057927..2058418	+	163	16804024	ilvN	lmo1985	-	acetolactate synthase 3 regulatory subunit
1977	 40.36	0	2058516..2059511	+	331	16804025	ilvC	lmo1986	-	ketol-acid reductoisomerase
1978	 43.01	+1	2059669..2061207	+	512	16804026	leuA	lmo1987	-	2-isopropylmalate synthase
1979	 43.11	+1	2061209..2062261	+	350	16804027	leuB	lmo1988	-	3-isopropylmalate dehydrogenase
1980	 43.27	+1	2062263..2063651	+	462	16804028	leuC	lmo1989	-	isopropylmalate isomerase large subunit
1981	 39.69	0	2063638..2064219	+	193	16804029	leuD	lmo1990	-	isopropylmalate isomerase small subunit
1982	 40.66	0	2064238..2065506	+	422	16804030	ilvA	lmo1991	-	threonine dehydratase
1983	 40.00	0	2065698..2066417	+	239	16804031	-	lmo1992	-	hypothetical protein
1984	 41.94	+1	2066455..2067756	-	433	16804032	pdp	lmo1993	-	pyrimidine-nucleoside phosphorylase
1985	 40.36	0	2067887..2068897	-	336	16804033	-	lmo1994	-	hypothetical protein
1986	 42.71	+1	2068977..2069648	-	223	16804034	dra	lmo1995	-	hypothetical protein
1987	 41.88	+1	2069710..2070657	-	315	16804035	-	lmo1996	-	hypothetical protein
1988	 40.05	0	2070754..2071170	-	138	16804036	-	lmo1997	-	hypothetical protein
1989	 38.35	0	2071187..2072182	-	331	16804037	-	lmo1998	-	hypothetical protein
1990	 39.44	0	2072205..2073269	-	354	16804038	-	lmo1999	-	hypothetical protein
1991	 36.98	0	2073282..2074103	-	273	16804039	-	lmo2000	-	hypothetical protein
1992	 40.29	0	2074084..2074902	-	272	16804040	-	lmo2001	-	hypothetical protein
1993	 36.97	0	2074925..2075392	-	155	16804041	-	lmo2002	-	hypothetical protein
1994	 34.76	0	2075412..2076113	-	233	16804042	-	lmo2003	-	hypothetical protein
1995	 36.89	0	2076115..2076846	-	243	16804043	-	lmo2004	-	hypothetical protein
1996	 39.76	0	2077019..2078014	-	331	16804044	-	lmo2005	-	hypothetical protein
1997	 42.93	+1	2078132..2079829	-	565	16804045	alsS	lmo2006	-	acetolactate synthase
1998	 36.63	0	2080027..2081484	-	485	16804046	-	lmo2007	-	hypothetical protein
1999	 38.27	0	2081505..2082476	-	323	16804047	-	lmo2008	-	hypothetical protein
2000	 37.85	0	2082495..2083424	-	309	16804048	-	lmo2009	-	hypothetical protein
2001	 37.04	0	2083537..2085021	-	494	16804049	-	lmo2010	-	hypothetical protein
2002	 35.80	0	2085021..2086760	-	579	16804050	-	lmo2011	-	hypothetical protein
2003	 38.56	0	2086817..2087428	-	203	16804051	-	lmo2012	-	hypothetical protein
2004	 40.92	0	2087489..2088793	-	434	16804052	-	lmo2013	-	hypothetical protein
2005	 41.46	+1	2088797..2091454	-	885	16804053	-	lmo2014	-	hypothetical protein
2006	 40.98	0	2091698..2094808	+	1036	16804054	-	lmo2015	-	hypothetical protein
2007	 40.80	0	2094877..2095077	-	66	16804055	cspB	lmo2016	-	hypothetical protein
2008	 39.94	0	2095366..2096061	-	231	16804056	-	lmo2017	-	hypothetical protein
2009	 38.89	0	2096075..2097064	-	329	16804057	dapF	lmo2018	-	diaminopimelate epimerase
2010	 40.20	0	2097176..2099941	-	921	16804058	ileS	lmo2019	-	isoleucyl-tRNA synthetase
2011	 37.12	0	2100224..2100751	-	175	16804059	divIVA	lmo2020	-	hypothetical protein
2012	 39.66	0	2100845..2101366	-	173	16804060	-	lmo2021	-	hypothetical protein
2013	 41.64	+1	2101371..2102477	-	368	16804061	-	lmo2022	-	hypothetical protein
2014	 43.09	+1	2102608..2104062	+	484	16804062	nadB	lmo2023	-	L-aspartate oxidase
2015	 41.37	+1	2104059..2104904	+	281	16804063	nadC	lmo2024	-	nicotinate-nucleotide pyrophosphorylase
2016	 40.42	0	2104901..2106001	+	366	16804064	nadA	lmo2025	-	quinolinate synthetase
2017	 37.80	0	2106329..2108209	-	626	16804065	-	lmo2026	-	peptidoglycan binding protein
2018	 35.05	0	2108500..2109603	-	367	16804066	-	lmo2027	-	putative cell surface protein, internalin proteins
2019	 39.00	0	2110009..2110785	-	258	16804067	-	lmo2028	-	hypothetical protein
2020	 33.68	-1	2110909..2111199	-	96	16804068	-	lmo2029	-	hypothetical protein
2021	 38.34	0	2111222..2111680	-	152	16804069	-	lmo2030	-	hypothetical protein
2022	 37.54	0	2111684..2112373	-	229	16804070	-	lmo2031	-	hypothetical protein
2023	 40.48	0	2112492..2113667	-	391	16804071	ftsZ	lmo2032	-	cell division protein FtsZ
2024	 38.88	0	2113734..2115014	-	426	16804072	ftsA	lmo2033	-	hypothetical protein
2025	 33.70	-1	2115381..2116193	-	270	16804073	divIB	lmo2034	-	hypothetical protein
2026	 38.64	0	2116216..2117307	-	363	16804074	murG	lmo2035	-	N-acetylglucosaminyl transferase
2027	 38.30	0	2117304..2118671	-	455	16804075	murD	lmo2036	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2028	 37.85	0	2118812..2119786	-	324	16804076	mraY	lmo2037	-	hypothetical protein
2029	 40.18	0	2119833..2121308	-	491	16804077	murE	lmo2038	-	hypothetical protein
2030	 38.48	0	2121483..2123738	-	751	16804078	pbpB	lmo2039	-	hypothetical protein
2031	 35.26	0	2123735..2124097	-	120	16804079	ftsL	lmo2040	-	hypothetical protein
2032	 39.08	0	2124114..2125052	-	312	16804080	mraW	lmo2041	-	S-adenosyl-methyltransferase MraW
2033	 36.57	0	2125065..2125496	-	143	16804081	-	lmo2042	-	cell division protein MraZ
2034	 37.82	0	2125699..2126946	-	415	16804082	-	lmo2043	-	hypothetical protein
2035	 37.30	0	2127062..2128876	+	604	16804083	-	lmo2044	-	hypothetical protein
2036	 31.52	-1	2128806..2129192	-	128	16804084	-	lmo2045	-	hypothetical protein
2037	 35.91	0	2129185..2130078	-	297	16804085	-	lmo2046	-	2-dehydropantoate 2-reductase
2038	 43.68	+1	2130228..2130401	-	57	16804086	rpmF	lmo2047	-	50S ribosomal protein L32
2039	 39.66	0	2130492..2131028	-	178	16804087	-	lmo2048	-	hypothetical protein
2040	 41.77	+1	2131158..2132330	+	390	16804088	-	lmo2049	-	hypothetical protein
2041	 40.25	0	2132412..2134652	+	746	16804089	-	lmo2050	-	hypothetical protein
2042	 38.23	0	2134695..2135735	-	346	16804090	-	lmo2051	-	hypothetical protein
2043	 40.17	0	2135754..2136236	-	160	16804091	-	lmo2052	-	hypothetical protein
2044	 37.46	0	2136239..2136796	-	185	16804092	-	lmo2053	-	hypothetical protein
2045	 35.11	0	2136893..2137174	-	93	16804093	-	lmo2054	-	hypothetical protein
2046	 42.67	+1	2137205..2137654	-	149	16804094	-	lmo2055	-	hypothetical protein
2047	 36.46	0	2137702..2138757	-	351	16804095	-	lmo2056	-	hypothetical protein
2048	 37.64	0	2138904..2139809	-	301	16804096	ctaB	lmo2057	-	protoheme IX farnesyltransferase
2049	 39.54	0	2140046..2140963	+	305	16804097	ctaA	lmo2058	-	hypothetical protein
2050	 35.75	0	2141071..2141814	+	247	16804098	-	lmo2059	-	hypothetical protein
2051	 39.72	0	2141820..2142461	-	213	16804099	-	lmo2060	-	hypothetical protein
2052	 41.59	+1	2142480..2143097	-	205	16804100	-	lmo2061	-	hypothetical protein
2053	 39.11	0	2143109..2144734	-	541	16804101	-	lmo2062	-	hypothetical protein
2054	 38.02	0	2144874..2145065	+	63	16804102	-	lmo2063	-	hypothetical protein
2055	 34.37	-1	2145127..2145513	+	128	16804103	-	lmo2064	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.