IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1879	 36.55	0	1962225..1962566	-	113	16803927	-	lmo1888	-	hypothetical protein
1880	 38.46	0	1962698..1963243	-	181	16803928	-	lmo1889	-	hypothetical protein
1881	 32.51	-1	1963240..1963605	-	121	16803929	-	lmo1890	-	hypothetical protein
1882	 36.96	0	1963852..1964457	+	201	16803930	recU	lmo1891	-	Holliday junction-specific endonuclease
1883	 40.10	0	1964489..1966972	+	827	16803931	pbpA	lmo1892	-	hypothetical protein
1884	 35.57	0	1967015..1967506	-	163	16803932	-	lmo1893	-	hypothetical protein
1885	 38.64	0	1967499..1968158	-	219	16803933	nth	lmo1894	-	endonuclease III (DNA repair)
1886	 37.92	0	1968169..1968888	-	239	16803934	dnaD	lmo1895	-	hypothetical protein
1887	 39.21	0	1969037..1970329	-	430	16803935	asnC	lmo1896	-	asparaginyl-tRNA synthetase
1888	 37.48	0	1970343..1971524	-	393	16803936	aspB	lmo1897	-	aspartate aminotransferase
1889	 34.36	-1	1971547..1972131	-	194	16803937	-	lmo1898	-	hypothetical protein
1890	 37.96	0	1972176..1974962	-	928	16803938	dinG	lmo1899	-	bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
1891	 36.46	0	1975059..1975442	-	127	16803939	panD	lmo1900	-	aspartate alpha-decarboxylase
1892	 37.88	0	1975446..1976303	-	285	16803940	panC	lmo1901	-	hypothetical protein
1893	 41.13	0	1976307..1977140	-	277	16803941	panB	lmo1902	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1894	 36.92	0	1977307..1977780	-	157	16803942	-	lmo1903	-	hypothetical protein
1895	 40.08	0	1977928..1978905	-	325	16803943	birA	lmo1904	-	hypothetical protein
1896	 38.58	0	1978895..1980076	-	393	16803944	cca	lmo1905	-	tRNA CCA-pyrophosphorylase
1897	 42.22	+1	1980091..1980495	-	134	16803945	mgsA	lmo1906	-	methylglyoxal synthase
1898	 39.27	0	1980511..1981302	-	263	16803946	dapB	lmo1907	-	dihydrodipicolinate reductase
1899	 39.58	0	1981299..1981634	-	111	16803947	-	lmo1908	-	hypothetical protein
1900	 40.37	0	1981774..1982640	+	288	16803948	-	lmo1909	-	hypothetical protein
1901	 41.55	+1	1982630..1983736	-	368	16803949	-	lmo1910	-	hypothetical protein
1902	 34.83	0	1984056..1985192	+	378	16803950	-	lmo1911	-	hypothetical protein
1903	 37.41	0	1985218..1986345	+	375	16803951	-	lmo1912	-	hypothetical protein
1904	 33.43	-1	1986342..1987346	+	334	16803952	-	lmo1913	-	hypothetical protein
1905	 37.13	0	1987365..1988048	+	227	16803953	-	lmo1914	-	hypothetical protein
1906	 41.06	0	1988159..1989802	+	547	16803954	-	lmo1915	-	malate dehydrogenase
1907	 39.29	0	1989805..1990812	+	335	16803955	-	lmo1916	-	hypothetical protein
1908	 38.60	0	1991047..1993326	+	759	16803956	pflA	lmo1917	-	hypothetical protein
1909	 40.92	0	1993372..1994637	-	421	16803957	-	lmo1918	-	hypothetical protein
1910	 41.96	+1	1994751..1995434	-	227	16803958	-	lmo1919	-	hypothetical protein
1911	 36.52	0	1995520..1996116	-	198	16803959	-	lmo1920	-	hypothetical protein
1912	 37.55	0	1996204..1996749	-	181	16803960	-	lmo1921	-	hypothetical protein
1913	 39.07	0	1996784..1998037	-	417	16803961	-	lmo1922	-	hypothetical protein
1914	 41.88	+1	1998168..1999454	-	428	16803962	aroE	lmo1923	-	3-phosphoshikimate 1-carboxyvinyltransferase
1915	 41.49	+1	1999468..2000571	-	367	16803963	tyrA	lmo1924	-	prephenate dehydrogenase
1916	 37.67	0	2000592..2001674	-	360	16803964	hisC	lmo1925	-	histidinol-phosphate aminotransferase
1917	 41.87	+1	2001674..2002048	-	124	16803965	-	lmo1926	-	hypothetical protein
1918	 40.26	0	2002045..2003142	-	365	16803966	aroB	lmo1927	-	3-dehydroquinate synthase
1919	 44.73	+1	2003145..2004311	-	388	16803967	aroF	lmo1928	-	chorismate synthase
1920	 40.99	0	2004515..2004958	-	147	16803968	ndk	lmo1929	-	hypothetical protein
1921	 38.72	0	2004977..2005942	-	321	16803969	-	lmo1930	-	hypothetical protein
1922	 40.06	0	2005953..2006666	-	237	16803970	ubiE	lmo1931	-	ubiquinone/menaquinone biosynthesis methyltransferase
1923	 39.58	0	2006689..2007456	-	255	16803971	-	lmo1932	-	hypothetical protein
1924	 39.30	0	2007515..2008084	-	189	16803972	folE	lmo1933	-	GTP cyclohydrolase I
1925	 37.68	0	2008319..2008594	-	91	16803973	hup	lmo1934	-	hypothetical protein
1926	 37.82	0	2009006..2009986	-	326	16803974	-	lmo1935	-	hypothetical protein
1927	 40.02	0	2010089..2011105	-	338	16803975	gpsA	lmo1936	-	hypothetical protein
1928	 38.44	0	2011128..2012438	-	436	16803976	engA	lmo1937	-	GTP-binding protein EngA
1929	 37.61	0	2012582..2013727	-	381	16803977	rpsA	lmo1938	-	30S ribosomal protein S1
1930	 38.07	0	2014086..2014760	-	224	16803978	cmk	lmo1939	-	hypothetical protein
1931	 37.69	0	2014776..2015738	-	320	16803979	-	lmo1940	-	hypothetical protein
1932	 39.31	0	2015819..2016538	-	239	16803980	-	lmo1941	-	hypothetical protein
1933	 36.89	0	2016858..2018261	-	467	16803981	recS	lmo1942	-	hypothetical protein
1934	 37.30	0	2018258..2019265	-	335	16803982	-	lmo1943	-	hypothetical protein
1935	 35.56	0	2019420..2019644	+	74	16803983	-	lmo1944	-	hypothetical protein
1936	 36.44	0	2019686..2020297	-	203	16803984	-	lmo1945	-	hypothetical protein
1937	 39.69	0	2020738..2021256	-	172	16803985	-	lmo1946	-	hypothetical protein
1938	 35.90	0	2021272..2023062	-	596	16803986	resE	lmo1947	-	hypothetical protein
1939	 41.00	0	2023163..2023879	-	238	16803987	resD	lmo1948	-	hypothetical protein
1940	 38.10	0	2024062..2024796	-	244	16803988	-	lmo1949	-	hypothetical protein
1941	 41.04	0	2024799..2025395	-	198	16803989	-	lmo1950	-	hypothetical protein
1942	 34.93	0	2025392..2026141	-	249	16803990	scpA	lmo1951	-	segregation and condensation protein A
1943	 39.82	0	2026157..2027467	-	436	16803991	lysA	lmo1952	-	hypothetical protein
1944	 39.68	0	2027648..2028466	-	272	16803992	pnp	lmo1953	-	purine nucleoside phosphorylase
1945	 38.82	0	2028485..2029669	-	394	16803993	drm	lmo1954	-	phosphopentomutase
1946	 39.04	0	2029698..2030591	-	297	16803994	-	lmo1955	-	hypothetical protein
1947	 39.07	0	2030744..2031196	-	150	16803995	fur	lmo1956	-	hypothetical protein
1948	 41.84	+1	2031438..2032460	-	340	16803996	fhuG	lmo1957	-	hypothetical protein
1949	 42.69	+1	2032460..2033485	-	341	16803997	fhuB	lmo1958	-	hypothetical protein
1950	 39.81	0	2033587..2034528	-	313	16803998	-	lmo1959	-	hypothetical protein
1951	 40.12	0	2034693..2035517	+	274	16803999	fhuC	lmo1960	-	hypothetical protein
1952	 42.64	+1	2035507..2036505	+	332	16804000	-	lmo1961	-	hypothetical protein
1953	 39.45	0	2036521..2037141	-	206	16804001	-	lmo1962	-	hypothetical protein
1954	 38.36	0	2037141..2037956	-	271	16804002	-	lmo1963	-	hypothetical protein
1955	 36.94	0	2037953..2038840	-	295	16804003	-	lmo1964	-	hypothetical protein
1956	 37.10	0	2039441..2039998	-	185	16804004	-	lmo1965	-	hypothetical protein
1957	 33.33	-1	2040274..2040933	+	219	16804005	-	lmo1966	-	hypothetical protein
1958	 38.83	0	2040911..2042110	+	399	16804006	-	lmo1967	-	hypothetical protein
1959	 37.10	0	2042157..2042900	-	247	16804007	-	lmo1968	-	hypothetical protein
1960	 37.44	0	2042913..2043521	-	202	16804008	-	lmo1969	-	hypothetical protein
1961	 38.67	0	2043540..2044457	-	305	16804009	-	lmo1970	-	hypothetical protein
1962	 37.51	0	2044481..2045749	-	422	16804010	ulaA	lmo1971	-	ascorbate-specific PTS system enzyme IIC
1963	 37.59	0	2045765..2046046	-	93	16804011	-	lmo1972	-	hypothetical protein
1964	 38.06	0	2046046..2046489	-	147	16804012	-	lmo1973	-	hypothetical protein
1965	 36.13	0	2046507..2047256	-	249	16804013	-	lmo1974	-	hypothetical protein
1966	 39.68	0	2047444..2048514	-	356	16804014	-	lmo1975	-	hypothetical protein
1967	 35.61	0	2048623..2049414	-	263	16804015	-	lmo1976	-	hypothetical protein
1968	 37.68	0	2049419..2050339	-	306	16804016	-	lmo1977	-	hypothetical protein
1969	 39.43	0	2050639..2052114	+	491	16804017	-	lmo1978	-	glucose-6-phosphate 1-dehydrogenase
1970	 35.19	0	2052233..2052664	+	143	16804018	-	lmo1979	-	hypothetical protein
1971	 34.78	0	2052696..2052833	+	45	16804019	-	lmo1980	-	hypothetical protein
1972	 39.09	0	2052816..2053301	-	161	16804020	-	lmo1981	-	hypothetical protein
1973	 37.88	0	2053274..2053801	-	175	16804021	-	lmo1982	-	hypothetical protein
1974	 43.66	+1	2054493..2056187	+	564	16804022	ilvD	lmo1983	-	dihydroxy-acid dehydratase
1975	 43.79	+1	2056205..2057926	+	573	16804023	ilvB	lmo1984	-	hypothetical protein
1976	 43.70	+1	2057927..2058418	+	163	16804024	ilvN	lmo1985	-	acetolactate synthase 3 regulatory subunit
1977	 40.36	0	2058516..2059511	+	331	16804025	ilvC	lmo1986	-	ketol-acid reductoisomerase
1978	 43.01	+1	2059669..2061207	+	512	16804026	leuA	lmo1987	-	2-isopropylmalate synthase
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.