IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
139	 42.55	+1	141337..141705	+	122	16802187	-	lmo0139	-	hypothetical protein
140	 39.67	0	141618..143006	+	462	16802188	-	lmo0140	-	hypothetical protein
141	 25.10	-2	143016..143258	+	80	16802189	-	lmo0141	-	hypothetical protein
142	 28.29	-2	143366..143722	+	118	16802190	-	lmo0142	-	hypothetical protein
143	 26.55	-2	144097..144273	+	58	16802191	-	lmo0143	-	hypothetical protein
144	 26.13	-2	144397..144840	+	147	16802192	-	lmo0144	-	hypothetical protein
145	 41.38	+1	145085..145171	+	28	16802193	-	lmo0145	-	hypothetical protein
146	 29.47	-2	145354..145560	+	68	16802194	-	lmo0146	-	hypothetical protein
147	 26.94	-2	145869..146306	+	145	16802195	-	lmo0147	-	hypothetical protein
148	 28.77	-2	146306..146656	+	116	16802196	-	lmo0148	-	hypothetical protein
149	 38.35	0	146764..147381	+	205	16802197	-	lmo0149	-	hypothetical protein
150	 27.60	-2	147399..147764	+	121	16802198	-	lmo0150	-	hypothetical protein
151	 30.15	-2	147884..148291	+	135	16802199	-	lmo0151	-	hypothetical protein
152	 41.12	0	148354..150009	-	551	16802200	-	lmo0152	-	hypothetical protein
153	 39.38	0	150232..151173	+	313	16802201	-	lmo0153	-	hypothetical protein
154	 39.01	0	151186..151890	+	234	16802202	-	lmo0154	-	hypothetical protein
155	 41.39	+1	151839..152645	+	268	16802203	-	lmo0155	-	hypothetical protein
156	 29.81	-2	152648..153328	-	226	16802204	-	lmo0156	-	hypothetical protein
157	 39.70	0	153608..155947	+	779	16802205	-	lmo0157	-	hypothetical protein
158	 37.02	0	155993..156805	+	270	16802206	-	lmo0158	-	hypothetical protein
159	 40.60	0	157089..159470	+	793	16802207	-	lmo0159	-	peptidoglycan binding protein
160	 38.11	0	159663..161378	+	571	16802208	-	lmo0160	-	peptidoglycan binding protein
161	 36.82	0	161420..162250	-	276	16802209	-	lmo0161	-	hypothetical protein
162	 42.40	+1	162467..163459	+	330	16802210	-	lmo0162	-	DNA polymerase III subunit delta'
163	 42.09	+1	163465..164298	+	277	16802211	-	lmo0163	-	hypothetical protein
164	 40.00	0	164309..164698	+	129	16802212	-	lmo0164	-	DNA replication intiation control protein YabA
165	 37.72	0	164756..165508	+	250	16802213	-	lmo0165	-	hypothetical protein
166	 37.36	0	165492..165764	+	90	16802214	-	lmo0166	-	GIY-YIG nuclease superfamily protein
167	 41.38	+1	165761..166642	+	293	16802215	-	lmo0167	-	hypothetical protein
168	 36.84	0	166687..166971	-	94	16802216	-	lmo0168	-	hypothetical protein
169	 37.53	0	167086..167943	+	285	16802217	-	lmo0169	-	hypothetical protein
170	 36.57	0	168005..169270	+	421	16802218	-	lmo0170	-	hypothetical protein
171	 36.41	0	169510..172008	+	832	16802219	-	lmo0171	-	hypothetical protein
172	 34.31	-1	172903..173208	-	101	16802220	-	lmo0174	-	hypothetical protein
173	 36.38	0	173309..174556	-	415	16802221	-	lmo0175	-	peptidoglycan binding protein
174	 38.33	0	174834..175694	+	286	16802222	-	lmo0176	-	hypothetical protein
175	 38.40	0	175766..177760	+	664	16802223	metS	lmo0177	-	methionyl-tRNA synthetase
176	 36.71	0	177924..179138	+	404	16802224	-	lmo0178	-	hypothetical protein
177	 37.54	0	179174..180052	+	292	16802225	-	lmo0179	-	hypothetical protein
178	 36.98	0	180052..180900	+	282	16802226	-	lmo0180	-	hypothetical protein
179	 37.07	0	180928..182184	+	418	16802227	-	lmo0181	-	hypothetical protein
180	 39.75	0	182267..185569	+	1100	16802228	-	lmo0182	-	hypothetical protein
181	 40.27	0	185572..187863	+	763	16802229	-	lmo0183	-	hypothetical protein
182	 38.87	0	187867..189528	+	553	16802230	-	lmo0184	-	hypothetical protein
183	 40.18	0	189625..190398	+	257	16802231	-	lmo0185	-	hypothetical protein
184	 36.02	0	190690..191916	+	408	16802232	-	lmo0186	-	hypothetical protein
185	 40.97	0	192018..192593	+	191	16802233	-	lmo0187	-	hypothetical protein
186	 38.51	0	192586..193473	+	295	16802234	ksgA	lmo0188	-	dimethyladenosine transferase
187	 34.88	0	193593..193850	+	85	16802235	-	lmo0189	-	hypothetical protein
188	 41.38	+1	193989..194870	+	293	16802236	-	lmo0190	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
189	 39.57	0	194892..195629	+	245	16802237	-	lmo0191	-	hypothetical protein
190	 39.80	0	195793..196611	+	272	16802238	-	lmo0192	-	purine operon repressor
191	 36.87	0	196786..197463	+	225	16802239	-	lmo0193	-	hypothetical protein
192	 40.26	0	197512..198204	+	230	16802240	-	lmo0194	-	ABC transporter, ATP-binding protein
193	 38.30	0	198201..199409	+	402	16802241	-	lmo0195	-	hypothetical protein
194	 42.39	+1	200094..200402	+	102	16802242	-	lmo0196	-	regulatory protein SpoVG
195	 40.45	0	200522..200830	+	102	16802243	-	lmo0197	-	regulatory protein SpoVG
196	 38.79	0	201217..202590	+	457	16802244	gcaD	lmo0198	-	hypothetical protein
197	 38.98	0	202641..203597	+	318	16802245	prs	lmo0199	-	phosphoribosyl pyrophosphate synthetase
198	 33.33	-1	203640..204353	-	237	16802246	prfA	lmo0200	-	listeriolysin positive regulatory protein
199	 35.32	0	204624..205577	-	317	16802247	plcA	lmo0201	-	phosphatidylinositol-specific phospholipase c
200	 35.97	0	205819..207408	+	529	16802248	hly	lmo0202	-	listeriolysin O precursor
201	 38.42	0	207739..209271	+	510	16802249	mpl	lmo0203	-	Zinc metalloproteinase precursor
202	 40.05	0	209470..211389	+	639	16802250	actA	lmo0204	-	actin-assembly inducing protein precursor
203	 35.52	0	211425..212294	+	289	16802251	plcB	lmo0205	-	phospholipase C
204	 30.56	-2	212366..212689	+	107	16802252	-	lmo0206	-	hypothetical protein
205	 33.77	-1	212824..213285	+	153	16802253	-	lmo0207	-	hypothetical protein
206	 40.54	0	213336..213668	-	110	16802254	-	lmo0208	-	hypothetical protein
207	 37.48	0	213735..214409	-	224	16802255	-	lmo0209	-	hypothetical protein
208	 39.49	0	214486..215427	-	313	16802256	ldh	lmo0210	-	L-lactate dehydrogenase
209	 38.94	0	215721..216344	+	207	16802257	ctc	lmo0211	-	50S ribosomal protein L25/general stress protein Ctc
210	 37.78	0	216434..217018	+	194	16802258	-	lmo0212	-	hypothetical protein
211	 37.43	0	217125..217685	+	186	16802259	pth	lmo0213	-	peptidyl-tRNA hydrolase
212	 40.59	0	217800..221339	+	1179	16802260	mfd	lmo0214	-	transcription-repair coupling factor
213	 42.08	+1	221370..222959	+	529	16802261	-	lmo0215	-	hypothetical protein
214	 36.56	0	222983..223261	+	92	16802262	-	lmo0216	-	hypothetical protein
215	 36.69	0	223490..223876	+	128	16802263	-	lmo0217	-	hypothetical protein
216	 39.86	0	224027..224455	+	142	16802264	-	lmo0218	-	hypothetical protein
217	 38.32	0	224562..226508	+	648	16802265	-	lmo0219	-	hypothetical protein
218	 41.81	+1	226854..228929	+	691	16802266	ftsH	lmo0220	-	hypothetical protein
219	 40.64	0	229045..229824	+	259	16802267	-	lmo0221	-	pantothenate kinase
220	 41.36	0	229840..230724	+	294	16802268	-	lmo0222	-	hypothetical protein
221	 42.07	+1	230840..231766	+	308	16802269	cysK	lmo0223	-	hypothetical protein
222	 42.40	+1	232662..233477	+	271	16802270	sul	lmo0224	-	hypothetical protein
223	 36.27	0	233491..233865	+	124	16802271	folA	lmo0225	-	hypothetical protein
224	 36.88	0	233858..234337	+	159	16802272	folK	lmo0226	-	hypothetical protein
225	 42.67	+1	234414..235409	+	331	16802273	-	lmo0227	-	hypothetical protein
226	 39.41	0	235524..237020	+	498	16802274	lysS	lmo0228	-	lysyl-tRNA synthetase
227	 30.94	-2	248555..249013	+	152	16802275	-	lmo0229	-	hypothetical protein
228	 38.92	0	249026..249544	+	172	16802276	-	lmo0230	-	hypothetical protein
229	 36.75	0	249541..250563	+	340	16802277	-	lmo0231	-	ATP:guanido phosphotransferase
230	 40.52	0	250592..253054	+	820	16802278	clpC	lmo0232	-	endopeptidase Clp ATP-binding chain C
231	 41.48	+1	253200..254573	+	457	16802279	-	lmo0233	-	DNA repair protein RadA
232	 35.57	0	254707..255780	+	357	16802280	-	lmo0234	-	hypothetical protein
233	 42.78	+1	255800..256498	+	232	16802281	ispD	lmo0235	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
234	 41.77	+1	256491..256964	+	157	16802282	ispF	lmo0236	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
235	 37.87	0	256983..258458	+	491	16802283	gltX	lmo0237	-	hypothetical protein
236	 44.88	+2	258856..259470	+	204	16802284	cysE	lmo0238	-	hypothetical protein
237	 40.40	0	259477..260892	+	471	16802285	cysS	lmo0239	-	cysteinyl-tRNA synthetase
238	 41.61	+1	260896..261306	+	136	16802286	-	lmo0240	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.