IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1788	 43.29	+1	1867180..1867410	-	76	16803836	-	lmo1796	-	hypothetical protein
1789	 37.00	0	1867427..1867699	-	90	16803837	rpsP	lmo1797	-	30S ribosomal protein S16
1790	 36.29	0	1867802..1869460	-	552	16803838	-	lmo1798	-	hypothetical protein
1791	 52.40	+2	1869532..1872243	-	903	16803839	-	lmo1799	-	peptidoglycan binding protein
1792	 37.90	0	1872724..1873620	-	298	16803840	-	lmo1800	-	hypothetical protein
1793	 41.32	0	1873764..1875116	-	450	16803841	ffh	lmo1801	-	hypothetical protein
1794	 32.43	-1	1875129..1875461	-	110	16803842	-	lmo1802	-	hypothetical protein
1795	 41.84	+1	1875574..1876560	-	328	16803843	-	lmo1803	-	hypothetical protein
1796	 39.34	0	1876575..1880135	-	1186	16803844	smc	lmo1804	-	hypothetical protein
1797	 38.70	0	1880158..1880847	-	229	16803845	rncS	lmo1805	-	hypothetical protein
1798	 40.17	0	1881041..1881274	-	77	16803846	acpA	lmo1806	-	hypothetical protein
1799	 40.46	0	1881381..1882124	-	247	16803847	fabG	lmo1807	-	hypothetical protein
1800	 40.76	0	1882128..1883069	-	313	16803848	fabD	lmo1808	-	acyl-carrier-protein S-malonyltransferase
1801	 38.56	0	1883062..1884075	-	337	16803849	plsX	lmo1809	-	putative glycerol-3-phosphate acyltransferase PlsX
1802	 38.95	0	1884096..1884665	-	189	16803850	-	lmo1810	-	fatty acid biosynthesis transcriptional regulator
1803	 40.31	0	1884846..1886894	-	682	16803851	-	lmo1811	-	hypothetical protein
1804	 44.89	+2	1886887..1887777	-	296	16803852	-	lmo1812	-	hypothetical protein
1805	 39.97	0	1887913..1888575	-	220	16803853	-	lmo1813	-	hypothetical protein
1806	 38.88	0	1888615..1890273	-	552	16803854	-	lmo1814	-	hypothetical protein
1807	 35.79	0	1890288..1890653	-	121	16803855	-	lmo1815	-	hypothetical protein
1808	 42.86	+1	1890951..1891139	+	62	16803856	rpmB	lmo1816	-	50S ribosomal protein L28
1809	 39.22	0	1891236..1891880	-	214	16803857	-	lmo1817	-	hypothetical protein
1810	 38.96	0	1891944..1892600	-	218	16803858	-	lmo1818	-	ribulose-phosphate 3-epimerase
1811	 38.24	0	1892603..1893478	-	291	16803859	-	lmo1819	-	ribosome-associated GTPase
1812	 37.04	0	1893497..1895464	-	655	16803860	-	lmo1820	-	hypothetical protein
1813	 41.24	0	1895461..1896219	-	252	16803861	-	lmo1821	-	hypothetical protein
1814	 38.95	0	1896242..1897576	-	444	16803862	-	lmo1822	-	hypothetical protein
1815	 42.49	+1	1897577..1898515	-	312	16803863	fmt	lmo1823	-	hypothetical protein
1816	 41.48	+1	1898529..1900922	-	797	16803864	priA	lmo1824	-	primosome assembly protein PriA
1817	 41.92	+1	1900927..1902126	-	399	16803865	-	lmo1825	-	hypothetical protein
1818	 35.29	0	1902281..1902484	-	67	16803866	-	lmo1826	-	hypothetical protein
1819	 40.45	0	1902484..1903101	-	205	16803867	-	lmo1827	-	hypothetical protein
1820	 39.38	0	1903120..1903995	-	291	16803868	-	lmo1828	-	hypothetical protein
1821	 41.51	+1	1904152..1905864	+	570	16803869	-	lmo1829	-	hypothetical protein
1822	 40.67	0	1905952..1906551	+	199	16803870	-	lmo1830	-	short chain dehydrogenase
1823	 39.37	0	1906592..1907221	-	209	16803871	pyrE	lmo1831	-	orotate phosphoribosyltransferase
1824	 42.02	+1	1907218..1907919	-	233	16803872	pyrF	lmo1832	-	hypothetical protein
1825	 44.70	+1	1907916..1908830	-	304	16803873	pyrD	lmo1833	-	dihydroorotate dehydrogenase 1B
1826	 44.18	+1	1908827..1909591	-	254	16803874	pyrDII	lmo1834	-	hypothetical protein
1827	 42.51	+1	1909614..1912826	-	1070	16803875	carB	lmo1835	-	carbamoyl phosphate synthase large subunit
1828	 41.58	+1	1912819..1913910	-	363	16803876	pyrAa	lmo1836	-	carbamoyl phosphate synthase small subunit
1829	 41.53	+1	1913907..1915187	-	426	16803877	pyrC	lmo1837	-	dihydroorotase
1830	 40.68	0	1915175..1916086	-	303	16803878	pyrB	lmo1838	-	aspartate carbamoyltransferase catalytic subunit
1831	 42.58	+1	1916166..1917452	-	428	16803879	pyrP	lmo1839	-	hypothetical protein
1832	 43.66	+1	1917581..1918132	-	183	16803880	pyrR	lmo1840	-	pyrimidine regulatory protein PyrR
1833	 32.03	-1	1918363..1918593	+	76	16803881	-	lmo1841	-	hypothetical protein
1834	 33.33	-1	1918681..1919505	+	274	16803882	-	lmo1842	-	hypothetical protein
1835	 39.58	0	1919525..1920436	-	303	16803883	-	lmo1843	-	hypothetical protein
1836	 35.27	0	1920436..1920900	-	154	16803884	lspA	lmo1844	-	lipoprotein signal peptidase
1837	 41.20	0	1920982..1922265	-	427	16803885	-	lmo1845	-	hypothetical protein
1838	 42.01	+1	1922439..1923809	+	456	16803886	-	lmo1846	-	multidrug efflux protein
1839	 37.30	0	1923825..1924757	-	310	16803887	-	lmo1847	-	hypothetical protein
1840	 36.54	0	1924754..1925596	-	280	16803888	-	lmo1848	-	hypothetical protein
1841	 40.80	0	1925600..1926322	-	240	16803889	-	lmo1849	-	hypothetical protein
1842	 36.93	0	1926482..1926898	-	138	16803890	-	lmo1850	-	hypothetical protein
1843	 37.89	0	1926935..1928425	-	496	16803891	-	lmo1851	-	hypothetical protein
1844	 38.16	0	1928579..1928785	-	68	16803892	-	lmo1852	-	hypothetical protein
1845	 39.97	0	1928798..1931011	-	737	16803893	-	lmo1853	-	hypothetical protein
1846	 37.76	0	1931026..1931319	-	97	16803894	-	lmo1854	-	hypothetical protein
1847	 37.58	0	1931442..1932266	-	274	16803895	-	lmo1855	-	hypothetical protein
1848	 39.03	0	1932324..1933025	-	233	16803896	deoD	lmo1856	-	purine nucleoside phosphorylase
1849	 36.75	0	1933037..1933270	-	77	16803897	-	lmo1857	-	hypothetical protein
1850	 40.29	0	1933333..1934238	-	301	16803898	-	lmo1858	-	hypothetical protein
1851	 40.87	0	1934321..1934758	-	145	16803899	-	lmo1859	-	methionine sulfoxide reductase B
1852	 39.89	0	1934765..1935298	-	177	16803900	-	lmo1860	-	methionine sulfoxide reductase A
1853	 36.42	0	1935334..1935948	-	204	16803901	-	lmo1861	-	hypothetical protein
1854	 34.99	0	1935964..1936749	-	261	16803902	-	lmo1862	-	hypothetical protein
1855	 36.19	0	1936764..1937603	-	279	16803903	-	lmo1863	-	hypothetical protein
1856	 38.70	0	1937783..1938415	+	210	16803904	-	lmo1864	-	hypothetical protein
1857	 40.29	0	1938538..1939155	+	205	16803905	-	lmo1865	-	hypothetical protein
1858	 41.21	0	1939168..1939980	+	270	16803906	-	lmo1866	-	hypothetical protein
1859	 42.88	+1	1939999..1942638	+	879	16803907	-	lmo1867	-	pyruvate phosphate dikinase
1860	 35.19	0	1942687..1943064	-	125	16803908	-	lmo1868	-	hypothetical protein
1861	 38.21	0	1943068..1944051	-	327	16803909	-	lmo1869	-	hypothetical protein
1862	 36.86	0	1944145..1944768	-	207	16803910	-	lmo1870	-	hypothetical protein
1863	 40.74	0	1944908..1946419	-	503	16803911	-	lmo1871	-	hypothetical protein
1864	 39.38	0	1946488..1947363	-	291	16803912	-	lmo1872	-	hypothetical protein
1865	 38.51	0	1947416..1947898	-	160	16803913	-	lmo1873	-	hypothetical protein
1866	 38.31	0	1947914..1948858	-	314	16803914	thyA	lmo1874	-	thymidylate synthase
1867	 41.15	0	1948871..1950763	-	630	16803915	-	lmo1875	-	hypothetical protein
1868	 41.14	0	1951284..1952564	-	426	16803916	-	lmo1877	-	hypothetical protein
1869	 38.23	0	1952721..1953149	-	142	16803917	-	lmo1878	-	manganese transport transcriptional regulator
1870	 42.29	+1	1953513..1953713	+	66	16803918	cspD	lmo1879	-	hypothetical protein
1871	 39.80	0	1953836..1954237	+	133	16803919	-	lmo1880	-	hypothetical protein
1872	 40.78	0	1954255..1955127	-	290	16803920	-	lmo1881	-	hypothetical protein
1873	 45.19	+2	1955205..1955474	-	89	16803921	rpsN	lmo1882	-	30S ribosomal protein S14
1874	 41.64	+1	1955598..1956656	-	352	16803922	-	lmo1883	-	hypothetical protein
1875	 40.37	0	1956848..1958155	-	435	16803923	-	lmo1884	-	hypothetical protein
1876	 38.34	0	1958162..1958740	-	192	16803924	-	lmo1885	-	xanthine phosphoribosyltransferase
1877	 37.57	0	1958968..1960476	-	502	16803925	-	lmo1886	-	hypothetical protein
1878	 41.69	+1	1960496..1961644	-	382	16803926	-	lmo1887	-	hypothetical protein
1879	 36.55	0	1962225..1962566	-	113	16803927	-	lmo1888	-	hypothetical protein
1880	 38.46	0	1962698..1963243	-	181	16803928	-	lmo1889	-	hypothetical protein
1881	 32.51	-1	1963240..1963605	-	121	16803929	-	lmo1890	-	hypothetical protein
1882	 36.96	0	1963852..1964457	+	201	16803930	recU	lmo1891	-	Holliday junction-specific endonuclease
1883	 40.10	0	1964489..1966972	+	827	16803931	pbpA	lmo1892	-	hypothetical protein
1884	 35.57	0	1967015..1967506	-	163	16803932	-	lmo1893	-	hypothetical protein
1885	 38.64	0	1967499..1968158	-	219	16803933	nth	lmo1894	-	endonuclease III (DNA repair)
1886	 37.92	0	1968169..1968888	-	239	16803934	dnaD	lmo1895	-	hypothetical protein
1887	 39.21	0	1969037..1970329	-	430	16803935	asnC	lmo1896	-	asparaginyl-tRNA synthetase
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.