IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.00   STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1717	 40.11	0	1787280..1787648	-	122	16803765	-	lmo1725	-	hypothetical protein
1718	 38.01	0	1787769..1788752	-	327	16803766	-	lmo1726	-	hypothetical protein
1719	 39.96	0	1788812..1789777	-	321	16803767	-	lmo1727	-	hypothetical protein
1720	 38.52	0	1789825..1793085	-	1086	16803768	-	lmo1728	-	hypothetical protein
1721	 40.61	0	1793082..1795253	-	723	16803769	-	lmo1729	-	hypothetical protein
1722	 38.96	0	1795681..1796925	+	414	16803770	-	lmo1730	-	hypothetical protein
1723	 38.03	0	1796987..1797880	+	297	16803771	-	lmo1731	-	hypothetical protein
1724	 37.42	0	1797897..1798727	+	276	16803772	-	lmo1732	-	hypothetical protein
1725	 43.33	+1	1798772..1800241	-	489	16803773	gltD	lmo1733	-	glutamate synthase subunit beta
1726	 41.21	0	1800256..1804848	-	1530	16803774	-	lmo1734	-	hypothetical protein
1727	 39.75	0	1805041..1805928	+	295	16803775	gltC	lmo1735	-	transcription activator of glutamate synthase operon GltC
1728	 40.66	0	1805925..1806443	-	172	16803776	-	lmo1736	-	hypothetical protein
1729	 41.10	0	1806446..1807552	-	368	16803777	-	lmo1737	-	hypothetical protein
1730	 32.97	-1	1807643..1808458	-	271	16803778	-	lmo1738	-	hypothetical protein
1731	 38.58	0	1808460..1809107	-	215	16803779	-	lmo1739	-	hypothetical protein
1732	 36.76	0	1809118..1809759	-	213	16803780	-	lmo1740	-	hypothetical protein
1733	 34.29	-1	1810157..1811197	-	346	16803781	-	lmo1741	-	hypothetical protein
1734	 40.33	0	1811219..1812961	-	580	16803782	adeC	lmo1742	-	hypothetical protein
1735	 34.64	0	1812978..1813436	-	152	16803783	-	lmo1743	-	hypothetical protein
1736	 36.64	0	1813457..1814332	-	291	16803784	-	lmo1744	-	hypothetical protein
1737	 31.71	-1	1814403..1815080	-	225	16803785	-	lmo1745	-	hypothetical protein
1738	 32.93	-1	1815143..1817122	-	659	16803786	-	lmo1746	-	hypothetical protein
1739	 38.28	0	1817112..1817879	-	255	16803787	-	lmo1747	-	hypothetical protein
1740	 34.71	0	1818007..1818516	-	169	16803788	-	lmo1748	-	hypothetical protein
1741	 36.08	0	1818740..1819213	+	157	16803789	-	lmo1749	-	hypothetical protein
1742	 38.02	0	1819244..1819798	-	184	16803790	-	lmo1750	-	hypothetical protein
1743	 37.96	0	1820133..1821494	-	453	16803791	-	lmo1751	-	hypothetical protein
1744	 30.56	-2	1821518..1822273	-	251	16803792	-	lmo1752	-	hypothetical protein
1745	 38.37	0	1822421..1823353	-	310	16803793	-	lmo1753	-	putative lipid kinase
1746	 38.50	0	1823494..1824924	-	476	16803794	gatB	lmo1754	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1747	 37.88	0	1824936..1826387	-	483	16803795	gatA	lmo1755	-	glutamyl-tRNA(Gln) amidotransferase (subunit A)
1748	 36.39	0	1826411..1826704	-	97	16803796	gatC	lmo1756	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1749	 35.39	0	1826829..1827944	-	371	16803797	-	lmo1757	-	hypothetical protein
1750	 40.13	0	1827941..1829956	-	671	16803798	ligA	lmo1758	-	NAD-dependent DNA ligase LigA
1751	 39.07	0	1829982..1832177	-	731	16803799	pcrA	lmo1759	-	ATP-dependent DNA helicase
1752	 37.61	0	1832242..1832919	-	225	16803800	-	lmo1760	-	geranylgeranylglyceryl phosphate synthase-like protein
1753	 39.68	0	1833125..1834480	+	451	16803801	-	lmo1761	-	hypothetical protein
1754	 34.12	-1	1834523..1834777	-	84	16803802	-	lmo1762	-	hypothetical protein
1755	 36.70	0	1834795..1835091	-	98	16803803	-	lmo1763	-	hypothetical protein
1756	 40.46	0	1835229..1836491	-	420	16803804	purD	lmo1764	-	phosphoribosylamine--glycine ligase
1757	 40.52	0	1836516..1838045	-	509	16803805	purH	lmo1765	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1758	 37.39	0	1838051..1838617	-	188	16803806	purN	lmo1766	-	hypothetical protein
1759	 41.43	+1	1838614..1839663	-	349	16803807	purM	lmo1767	-	phosphoribosylaminoimidazole synthetase
1760	 42.23	+1	1839682..1841109	-	475	16803808	purF	lmo1768	-	amidophosphoribosyltransferase
1761	 42.75	+1	1841094..1843313	-	739	16803809	purQ	lmo1769	-	phosphoribosylformylglycinamidine synthase II
1762	 40.94	0	1843306..1843989	-	227	16803810	purL	lmo1770	-	phosphoribosylformylglycinamidine synthase subunit I
1763	 36.59	0	1843993..1844238	-	81	16803811	-	lmo1771	-	phosphoribosylformylglycinamidine synthase subunit PurS
1764	 39.78	0	1844250..1844963	-	237	16803812	purC	lmo1772	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1765	 39.37	0	1845044..1846336	-	430	16803813	purB	lmo1773	-	adenylosuccinate lyase
1766	 38.22	0	1846355..1847479	-	374	16803814	purK	lmo1774	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1767	 40.70	0	1847472..1847960	-	162	16803815	purE	lmo1775	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
1768	 33.90	-1	1848166..1848690	-	174	16803816	-	lmo1776	-	hypothetical protein
1769	 34.98	0	1854077..1854682	-	201	16803817	-	lmo1777	-	hypothetical protein
1770	 37.47	0	1854748..1855521	+	257	16803818	-	lmo1778	-	hypothetical protein
1771	 34.44	-1	1855571..1855933	+	120	16803819	-	lmo1779	-	hypothetical protein
1772	 38.77	0	1855952..1857184	-	410	16803820	-	lmo1780	-	peptidase T
1773	 37.85	0	1857242..1857772	-	176	16803821	-	lmo1781	-	hypothetical protein
1774	 37.96	0	1857856..1858611	+	251	16803822	-	lmo1782	-	hypothetical protein
1775	 37.22	0	1858651..1859010	-	119	16803823	rplT	lmo1783	-	50S ribosomal protein L20
1776	 40.30	0	1859050..1859250	-	66	16803824	rpmI	lmo1784	-	50S ribosomal protein L35
1777	 41.67	+1	1859272..1859787	-	171	16803825	infC	lmo1785	-	translation initiation factor IF-3
1778	 33.89	-1	1860200..1861090	-	296	16803826	inlC	lmo1786	-	internalin C
1779	 41.74	+1	1861907..1862251	-	114	16803827	rplS	lmo1787	-	50S ribosomal protein L19
1780	 37.01	0	1862459..1862893	+	144	16803828	-	lmo1788	-	hypothetical protein
1781	 37.41	0	1862893..1863480	+	195	16803829	-	lmo1789	-	hypothetical protein
1782	 40.31	0	1863501..1864217	+	238	16803830	-	lmo1790	-	hypothetical protein
1783	 39.23	0	1864248..1864637	-	129	16803831	-	lmo1791	-	hypothetical protein
1784	 41.60	+1	1864657..1865394	-	245	16803832	trmD	lmo1792	-	hypothetical protein
1785	 37.96	0	1865394..1865912	-	172	16803833	-	lmo1793	-	hypothetical protein
1786	 36.43	0	1865922..1866308	-	128	16803834	-	lmo1794	-	hypothetical protein
1787	 42.59	+1	1866336..1867070	-	244	16803835	-	lmo1795	-	hypothetical protein
1788	 43.29	+1	1867180..1867410	-	76	16803836	-	lmo1796	-	hypothetical protein
1789	 37.00	0	1867427..1867699	-	90	16803837	rpsP	lmo1797	-	30S ribosomal protein S16
1790	 36.29	0	1867802..1869460	-	552	16803838	-	lmo1798	-	hypothetical protein
1791	 52.40	+2	1869532..1872243	-	903	16803839	-	lmo1799	-	peptidoglycan binding protein
1792	 37.90	0	1872724..1873620	-	298	16803840	-	lmo1800	-	hypothetical protein
1793	 41.32	0	1873764..1875116	-	450	16803841	ffh	lmo1801	-	hypothetical protein
1794	 32.43	-1	1875129..1875461	-	110	16803842	-	lmo1802	-	hypothetical protein
1795	 41.84	+1	1875574..1876560	-	328	16803843	-	lmo1803	-	hypothetical protein
1796	 39.34	0	1876575..1880135	-	1186	16803844	smc	lmo1804	-	hypothetical protein
1797	 38.70	0	1880158..1880847	-	229	16803845	rncS	lmo1805	-	hypothetical protein
1798	 40.17	0	1881041..1881274	-	77	16803846	acpA	lmo1806	-	hypothetical protein
1799	 40.46	0	1881381..1882124	-	247	16803847	fabG	lmo1807	-	hypothetical protein
1800	 40.76	0	1882128..1883069	-	313	16803848	fabD	lmo1808	-	acyl-carrier-protein S-malonyltransferase
1801	 38.56	0	1883062..1884075	-	337	16803849	plsX	lmo1809	-	putative glycerol-3-phosphate acyltransferase PlsX
1802	 38.95	0	1884096..1884665	-	189	16803850	-	lmo1810	-	fatty acid biosynthesis transcriptional regulator
1803	 40.31	0	1884846..1886894	-	682	16803851	-	lmo1811	-	hypothetical protein
1804	 44.89	+2	1886887..1887777	-	296	16803852	-	lmo1812	-	hypothetical protein
1805	 39.97	0	1887913..1888575	-	220	16803853	-	lmo1813	-	hypothetical protein
1806	 38.88	0	1888615..1890273	-	552	16803854	-	lmo1814	-	hypothetical protein
1807	 35.79	0	1890288..1890653	-	121	16803855	-	lmo1815	-	hypothetical protein
1808	 42.86	+1	1890951..1891139	+	62	16803856	rpmB	lmo1816	-	50S ribosomal protein L28
1809	 39.22	0	1891236..1891880	-	214	16803857	-	lmo1817	-	hypothetical protein
1810	 38.96	0	1891944..1892600	-	218	16803858	-	lmo1818	-	ribulose-phosphate 3-epimerase
1811	 38.24	0	1892603..1893478	-	291	16803859	-	lmo1819	-	ribosome-associated GTPase
1812	 37.04	0	1893497..1895464	-	655	16803860	-	lmo1820	-	hypothetical protein
1813	 41.24	0	1895461..1896219	-	252	16803861	-	lmo1821	-	hypothetical protein
1814	 38.95	0	1896242..1897576	-	444	16803862	-	lmo1822	-	hypothetical protein
1815	 42.49	+1	1897577..1898515	-	312	16803863	fmt	lmo1823	-	hypothetical protein
1816	 41.48	+1	1898529..1900922	-	797	16803864	priA	lmo1824	-	primosome assembly protein PriA
38.00	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.