IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1652	 40.71	0	1708857..1711268	-	803	16803700	leuS	lmo1660	-	leucyl-tRNA synthetase
1653	 41.10	0	1711672..1712637	+	321	16803701	-	lmo1661	-	hypothetical protein
1654	 44.44	+1	1712634..1713209	+	191	16803702	-	lmo1662	-	hypothetical protein
1655	 38.48	0	1713234..1715099	-	621	16803703	ansB	lmo1663	-	hypothetical protein
1656	 42.08	+1	1715236..1716435	-	399	16803704	metK	lmo1664	-	S-adenosylmethionine synthetase
1657	 32.01	-1	1716858..1717160	+	100	16803705	-	lmo1665	-	hypothetical protein
1658	 38.71	0	1717193..1722328	-	1711	16803706	-	lmo1666	-	peptidoglycan linked protein (LPXTG)
1659	 40.48	0	1722431..1723339	-	302	16803707	-	lmo1667	-	hypothetical protein
1660	 31.69	-1	1723356..1723598	-	80	16803708	-	lmo1668	-	hypothetical protein
1661	 39.03	0	1723649..1724122	-	157	16803709	-	lmo1669	-	hypothetical protein
1662	 41.20	0	1724196..1724462	+	88	16803710	-	lmo1670	-	hypothetical protein
1663	 36.06	0	1724612..1725565	+	317	16803711	-	lmo1671	-	hypothetical protein
1664	 40.14	0	1725584..1726993	-	469	16803712	menE	lmo1672	-	O-succinylbenzoic acid--CoA ligase
1665	 40.17	0	1727009..1727827	-	272	16803713	menB	lmo1673	-	naphthoate synthase
1666	 40.94	0	1727824..1728651	-	275	16803714	-	lmo1674	-	hypothetical protein
1667	 41.08	0	1728653..1730395	-	580	16803715	menD	lmo1675	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
1668	 39.38	0	1730392..1731780	-	462	16803716	menF	lmo1676	-	menaquinone-specific isochorismate synthase
1669	 38.45	0	1731955..1732893	+	312	16803717	-	lmo1677	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1670	 41.80	+1	1732926..1734779	-	617	16803718	-	lmo1678	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
1671	 44.16	+1	1734776..1735948	-	390	16803719	-	lmo1679	-	cystathionine beta-lyase
1672	 43.91	+1	1735941..1737065	-	374	16803720	-	lmo1680	-	hypothetical protein
1673	 41.56	+1	1737087..1739384	-	765	16803721	-	lmo1681	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1674	 38.86	0	1739674..1740849	-	391	16803722	-	lmo1682	-	hypothetical protein
1675	 36.24	0	1748263..1748709	-	148	16803723	-	lmo1683	-	hypothetical protein
1676	 33.76	-1	1748792..1749733	-	313	16803724	-	lmo1684	-	hypothetical protein
1677	 41.49	+1	1749878..1751176	+	432	16803725	gsaB	lmo1685	-	glutamate-1-semialdehyde aminotransferase
1678	 34.07	-1	1751283..1752371	+	362	16803726	-	lmo1686	-	hypothetical protein
1679	 39.58	0	1752413..1752940	-	175	16803727	-	lmo1687	-	hypothetical protein
1680	 39.22	0	1753095..1753841	-	248	16803728	-	lmo1688	-	enoyl-(acyl carrier protein) reductase
1681	 38.07	0	1753845..1754942	-	365	16803729	-	lmo1689	-	hypothetical protein
1682	 37.41	0	1755143..1756123	+	326	16803730	-	lmo1690	-	hypothetical protein
1683	 39.61	0	1756156..1756617	-	153	16803731	-	lmo1691	-	hypothetical protein
1684	 42.31	+1	1756629..1756862	-	77	16803732	-	lmo1692	-	hypothetical protein
1685	 36.42	0	1756864..1757673	-	269	16803733	recX	lmo1693	-	recombination regulator RecX
1686	 36.43	0	1757771..1758673	+	300	16803734	-	lmo1694	-	hypothetical protein
1687	 37.26	0	1758694..1761291	-	865	16803735	-	lmo1695	-	hypothetical protein
1688	 32.30	-1	1761318..1761992	-	224	16803736	-	lmo1696	-	hypothetical protein
1689	 39.23	0	1762200..1763165	+	321	16803737	-	lmo1697	-	hypothetical protein
1690	 36.83	0	1763209..1763751	-	180	16803738	-	lmo1698	-	hypothetical protein
1691	 38.76	0	1763941..1764843	+	300	16803739	-	lmo1699	-	hypothetical protein
1692	 37.20	0	1764871..1765077	+	68	16803740	-	lmo1700	-	hypothetical protein
1693	 37.57	0	1765117..1765470	-	117	16803741	-	lmo1701	-	hypothetical protein
1694	 34.83	0	1765499..1765900	-	133	16803742	-	lmo1702	-	hypothetical protein
1695	 41.52	+1	1765915..1767294	-	459	16803743	-	lmo1703	-	hypothetical protein
1696	 37.27	0	1767359..1767739	-	126	16803744	-	lmo1704	-	hypothetical protein
1697	 35.50	0	1767846..1768490	+	214	16803745	-	lmo1705	-	hypothetical protein
1698	 36.90	0	1768520..1769389	-	289	16803746	-	lmo1706	-	hypothetical protein
1699	 34.68	0	1769479..1769700	+	73	16803747	-	lmo1707	-	hypothetical protein
1700	 40.89	0	1769720..1770526	-	268	16803748	-	lmo1708	-	hypothetical protein
1701	 39.53	0	1770648..1771406	-	252	16803749	-	lmo1709	-	methionine aminopeptidase
1702	 39.37	0	1771594..1772040	+	148	16803750	-	lmo1710	-	hypothetical protein
1703	 40.31	0	1772178..1773410	+	410	16803751	-	lmo1711	-	hypothetical protein
1704	 38.49	0	1773514..1774773	+	419	16803752	-	lmo1712	-	hypothetical protein
1705	 42.90	+1	1774991..1775983	+	330	16803753	-	lmo1713	-	hypothetical protein
1706	 34.03	-1	1776257..1776829	-	190	16803754	-	lmo1714	-	hypothetical protein
1707	 33.48	-1	1776910..1777578	-	222	16803755	-	lmo1715	-	hypothetical protein
1708	 34.38	-1	1777763..1778338	+	191	16803756	-	lmo1716	-	hypothetical protein
1709	 28.46	-2	1778415..1779482	-	355	16803757	-	lmo1717	-	hypothetical protein
1710	 38.84	0	1779714..1780802	-	362	16803758	-	lmo1718	-	hypothetical protein
1711	 38.94	0	1780824..1781126	-	100	16803759	-	lmo1719	-	hypothetical protein
1712	 39.16	0	1781196..1781504	-	102	16803760	-	lmo1720	-	hypothetical protein
1713	 37.48	0	1781661..1784339	-	892	16803761	-	lmo1721	-	hypothetical protein
1714	 39.59	0	1784473..1785798	-	441	16803762	-	lmo1722	-	hypothetical protein
1715	 34.24	-1	1785841..1786614	-	257	16803763	-	lmo1723	-	hypothetical protein
1716	 34.21	-1	1786607..1787287	-	226	16803764	-	lmo1724	-	hypothetical protein
1717	 40.11	0	1787280..1787648	-	122	16803765	-	lmo1725	-	hypothetical protein
1718	 38.01	0	1787769..1788752	-	327	16803766	-	lmo1726	-	hypothetical protein
1719	 39.96	0	1788812..1789777	-	321	16803767	-	lmo1727	-	hypothetical protein
1720	 38.52	0	1789825..1793085	-	1086	16803768	-	lmo1728	-	hypothetical protein
1721	 40.61	0	1793082..1795253	-	723	16803769	-	lmo1729	-	hypothetical protein
1722	 38.96	0	1795681..1796925	+	414	16803770	-	lmo1730	-	hypothetical protein
1723	 38.03	0	1796987..1797880	+	297	16803771	-	lmo1731	-	hypothetical protein
1724	 37.42	0	1797897..1798727	+	276	16803772	-	lmo1732	-	hypothetical protein
1725	 43.33	+1	1798772..1800241	-	489	16803773	gltD	lmo1733	-	glutamate synthase subunit beta
1726	 41.21	0	1800256..1804848	-	1530	16803774	-	lmo1734	-	hypothetical protein
1727	 39.75	0	1805041..1805928	+	295	16803775	gltC	lmo1735	-	transcription activator of glutamate synthase operon GltC
1728	 40.66	0	1805925..1806443	-	172	16803776	-	lmo1736	-	hypothetical protein
1729	 41.10	0	1806446..1807552	-	368	16803777	-	lmo1737	-	hypothetical protein
1730	 32.97	-1	1807643..1808458	-	271	16803778	-	lmo1738	-	hypothetical protein
1731	 38.58	0	1808460..1809107	-	215	16803779	-	lmo1739	-	hypothetical protein
1732	 36.76	0	1809118..1809759	-	213	16803780	-	lmo1740	-	hypothetical protein
1733	 34.29	-1	1810157..1811197	-	346	16803781	-	lmo1741	-	hypothetical protein
1734	 40.33	0	1811219..1812961	-	580	16803782	adeC	lmo1742	-	hypothetical protein
1735	 34.64	0	1812978..1813436	-	152	16803783	-	lmo1743	-	hypothetical protein
1736	 36.64	0	1813457..1814332	-	291	16803784	-	lmo1744	-	hypothetical protein
1737	 31.71	-1	1814403..1815080	-	225	16803785	-	lmo1745	-	hypothetical protein
1738	 32.93	-1	1815143..1817122	-	659	16803786	-	lmo1746	-	hypothetical protein
1739	 38.28	0	1817112..1817879	-	255	16803787	-	lmo1747	-	hypothetical protein
1740	 34.71	0	1818007..1818516	-	169	16803788	-	lmo1748	-	hypothetical protein
1741	 36.08	0	1818740..1819213	+	157	16803789	-	lmo1749	-	hypothetical protein
1742	 38.02	0	1819244..1819798	-	184	16803790	-	lmo1750	-	hypothetical protein
1743	 37.96	0	1820133..1821494	-	453	16803791	-	lmo1751	-	hypothetical protein
1744	 30.56	-2	1821518..1822273	-	251	16803792	-	lmo1752	-	hypothetical protein
1745	 38.37	0	1822421..1823353	-	310	16803793	-	lmo1753	-	putative lipid kinase
1746	 38.50	0	1823494..1824924	-	476	16803794	gatB	lmo1754	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1747	 37.88	0	1824936..1826387	-	483	16803795	gatA	lmo1755	-	glutamyl-tRNA(Gln) amidotransferase (subunit A)
1748	 36.39	0	1826411..1826704	-	97	16803796	gatC	lmo1756	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1749	 35.39	0	1826829..1827944	-	371	16803797	-	lmo1757	-	hypothetical protein
1750	 40.13	0	1827941..1829956	-	671	16803798	ligA	lmo1758	-	NAD-dependent DNA ligase LigA
1751	 39.07	0	1829982..1832177	-	731	16803799	pcrA	lmo1759	-	ATP-dependent DNA helicase
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.