IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1578	 34.83	0	1627812..1628615	+	267	16803626	ppnK	lmo1586	-	inorganic polyphosphate/ATP-NAD kinase
1579	 39.54	0	1628647..1629597	-	316	16803627	argF	lmo1587	-	ornithine carbamoyltransferase
1580	 39.71	0	1629594..1630754	-	386	16803628	argD	lmo1588	-	acetylornithine aminotransferase
1581	 40.24	0	1630751..1631503	-	250	16803629	argB	lmo1589	-	acetylglutamate kinase
1582	 41.02	0	1631516..1632712	-	398	16803630	argJ	lmo1590	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1583	 39.92	0	1632728..1633759	-	343	16803631	argC	lmo1591	-	N-acetyl-gamma-glutamyl-phosphate reductase
1584	 39.77	0	1633933..1635144	-	403	16803632	-	lmo1592	-	hypothetical protein
1585	 38.77	0	1635146..1636285	-	379	16803633	-	lmo1593	-	hypothetical protein
1586	 36.83	0	1636412..1638127	-	571	16803634	-	lmo1594	-	septation ring formation regulator EzrA
1587	 37.01	0	1638420..1638908	+	162	16803635	-	lmo1595	-	hypothetical protein
1588	 41.79	+1	1639120..1639722	+	200	16803636	rpsD	lmo1596	-	30S ribosomal protein S4
1589	 35.26	0	1640225..1641004	-	259	16803637	-	lmo1597	-	hypothetical protein
1590	 38.25	0	1641284..1642543	-	419	16803638	tyrS	lmo1598	-	tyrosyl-tRNA synthetase
1591	 37.40	0	1642865..1643872	-	335	16803639	ccpA	lmo1599	-	catabolite control protein A
1592	 36.65	0	1644106..1645191	-	361	16803640	aroA	lmo1600	-	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
1593	 36.00	0	1645412..1645936	-	174	16803641	-	lmo1601	-	hypothetical protein
1594	 36.62	0	1645958..1646413	-	151	16803642	-	lmo1602	-	hypothetical protein
1595	 38.90	0	1646669..1647781	+	370	16803643	-	lmo1603	-	hypothetical protein
1596	 39.38	0	1647821..1648366	-	181	16803644	-	lmo1604	-	hypothetical protein
1597	 38.24	0	1648511..1649854	-	447	16803645	murC	lmo1605	-	UDP-N-acetylmuramate--L-alanine ligase
1598	 39.50	0	1650149..1652500	-	783	16803646	-	lmo1606	-	hypothetical protein
1599	 38.19	0	1652810..1653427	-	205	16803647	pheT	lmo1607	-	hypothetical protein
1600	 39.20	0	1653433..1654233	-	266	16803648	-	lmo1608	-	hypothetical protein
1601	 33.97	-1	1654268..1654579	-	103	16803649	-	lmo1609	-	hypothetical protein
1602	 38.36	0	1654691..1654909	-	72	16803650	-	lmo1610	-	hypothetical protein
1603	 41.62	+1	1654902..1655975	-	357	16803651	-	lmo1611	-	hypothetical protein
1604	 40.38	0	1656173..1656484	+	103	16803652	-	lmo1612	-	hypothetical protein
1605	 38.15	0	1656521..1656769	-	82	16803653	-	lmo1613	-	hypothetical protein
1606	 38.38	0	1656903..1657754	-	283	16803654	-	lmo1614	-	hypothetical protein
1607	 35.81	0	1657815..1658459	-	214	16803655	trmB	lmo1615	-	tRNA (guanine-N(7))-methyltransferase
1608	 38.44	0	1658466..1659248	-	260	16803656	-	lmo1616	-	hypothetical protein
1609	 40.27	0	1659457..1660926	-	489	16803657	-	lmo1617	-	hypothetical protein
1610	 37.64	0	1660923..1661363	-	146	16803658	-	lmo1618	-	hypothetical protein
1611	 37.01	0	1661588..1662457	-	289	16803659	daaA	lmo1619	-	D-amino acid aminotransferase
1612	 41.97	+1	1662570..1663982	-	470	16803660	-	lmo1620	-	dipeptidase PepV
1613	 36.71	0	1664057..1664470	-	137	16803661	-	lmo1621	-	hypothetical protein
1614	 43.44	+1	1664575..1665405	+	276	16803662	-	lmo1622	-	hypothetical protein
1615	 37.16	0	1665444..1666097	-	217	16803663	-	lmo1623	-	hypothetical protein
1616	 37.98	0	1666107..1667720	-	537	16803664	-	lmo1624	-	hypothetical protein
1617	 36.18	0	1667831..1669444	-	537	16803665	-	lmo1625	-	hypothetical protein
1618	 34.47	-1	1669529..1669966	-	145	16803666	-	lmo1626	-	hypothetical protein
1619	 38.37	0	1670037..1670810	-	257	16803667	trpA	lmo1627	-	tryptophan synthase subunit alpha
1620	 40.73	0	1670803..1672005	-	400	16803668	trpB	lmo1628	-	tryptophan synthase subunit beta
1621	 38.75	0	1672008..1672616	-	202	16803669	trpF	lmo1629	-	phosphoribosyl anthranilate isomerase
1622	 40.97	0	1672613..1673371	-	252	16803670	trpC	lmo1630	-	indole-3-glycerol-phosphate synthase
1623	 42.25	+1	1673368..1674387	-	339	16803671	trpD	lmo1631	-	anthranilate phosphoribosyltransferase
1624	 38.45	0	1674359..1674964	-	201	16803672	trpG	lmo1632	-	anthranilate synthase component II
1625	 39.05	0	1674961..1676325	-	454	16803673	trpE	lmo1633	-	anthranilate synthase component I
1626	 39.29	0	1677409..1680009	+	866	16803674	-	lmo1634	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
1627	 40.79	0	1680132..1680560	+	142	16803675	-	lmo1635	-	hypothetical protein
1628	 38.22	0	1680644..1681564	+	306	16803676	-	lmo1636	-	hypothetical protein
1629	 38.95	0	1681561..1682628	+	355	16803677	-	lmo1637	-	hypothetical protein
1630	 38.36	0	1682664..1683638	-	324	16803678	-	lmo1638	-	hypothetical protein
1631	 37.46	0	1683635..1684216	-	193	16803679	-	lmo1639	-	hypothetical protein
1632	 36.32	0	1684229..1684462	-	77	16803680	-	lmo1640	-	hypothetical protein
1633	 42.47	+1	1684563..1687265	-	900	16803681	citB	lmo1641	-	aconitate hydratase
1634	 34.45	-1	1687420..1688223	-	267	16803682	-	lmo1642	-	hypothetical protein
1635	 34.75	0	1688248..1688670	-	140	16803683	-	lmo1643	-	hypothetical protein
1636	 37.99	0	1688670..1691888	-	1072	16803684	-	lmo1644	-	hypothetical protein
1637	 38.02	0	1691972..1695043	-	1023	16803685	-	lmo1645	-	hypothetical protein
1638	 40.09	0	1695040..1696164	-	374	16803686	-	lmo1646	-	hypothetical protein
1639	 36.29	0	1696280..1696888	+	202	16803687	-	lmo1647	-	hypothetical protein
1640	 33.06	-1	1696940..1697302	-	120	16803688	-	lmo1648	-	hypothetical protein
1641	 39.15	0	1697476..1697991	-	171	16803689	-	lmo1649	-	hypothetical protein
1642	 35.79	0	1698165..1698653	-	162	16803690	-	lmo1650	-	hypothetical protein
1643	 37.98	0	1698734..1700539	-	601	16803691	-	lmo1651	-	hypothetical protein
1644	 39.44	0	1700523..1702292	-	589	16803692	-	lmo1652	-	hypothetical protein
1645	 33.82	-1	1702695..1703315	-	206	16803693	-	lmo1653	-	putative cellsurface protein
1646	 33.33	-1	1703330..1703824	-	164	16803694	-	lmo1654	-	putative cellsurface protein
1647	 29.26	-2	1704618..1705181	-	187	16803695	-	lmo1655	-	hypothetical protein
1648	 34.03	-1	1705199..1705630	-	143	16803696	-	lmo1656	-	hypothetical protein
1649	 36.72	0	1706204..1707088	-	294	16803697	tsf	lmo1657	-	elongation factor Ts
1650	 38.93	0	1707168..1707917	-	249	16803698	rpsB	lmo1658	-	30S ribosomal protein S2
1651	 36.23	0	1708312..1708518	+	68	16803699	-	lmo1659	-	hypothetical protein
1652	 40.71	0	1708857..1711268	-	803	16803700	leuS	lmo1660	-	leucyl-tRNA synthetase
1653	 41.10	0	1711672..1712637	+	321	16803701	-	lmo1661	-	hypothetical protein
1654	 44.44	+1	1712634..1713209	+	191	16803702	-	lmo1662	-	hypothetical protein
1655	 38.48	0	1713234..1715099	-	621	16803703	ansB	lmo1663	-	hypothetical protein
1656	 42.08	+1	1715236..1716435	-	399	16803704	metK	lmo1664	-	S-adenosylmethionine synthetase
1657	 32.01	-1	1716858..1717160	+	100	16803705	-	lmo1665	-	hypothetical protein
1658	 38.71	0	1717193..1722328	-	1711	16803706	-	lmo1666	-	peptidoglycan linked protein (LPXTG)
1659	 40.48	0	1722431..1723339	-	302	16803707	-	lmo1667	-	hypothetical protein
1660	 31.69	-1	1723356..1723598	-	80	16803708	-	lmo1668	-	hypothetical protein
1661	 39.03	0	1723649..1724122	-	157	16803709	-	lmo1669	-	hypothetical protein
1662	 41.20	0	1724196..1724462	+	88	16803710	-	lmo1670	-	hypothetical protein
1663	 36.06	0	1724612..1725565	+	317	16803711	-	lmo1671	-	hypothetical protein
1664	 40.14	0	1725584..1726993	-	469	16803712	menE	lmo1672	-	O-succinylbenzoic acid--CoA ligase
1665	 40.17	0	1727009..1727827	-	272	16803713	menB	lmo1673	-	naphthoate synthase
1666	 40.94	0	1727824..1728651	-	275	16803714	-	lmo1674	-	hypothetical protein
1667	 41.08	0	1728653..1730395	-	580	16803715	menD	lmo1675	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
1668	 39.38	0	1730392..1731780	-	462	16803716	menF	lmo1676	-	menaquinone-specific isochorismate synthase
1669	 38.45	0	1731955..1732893	+	312	16803717	-	lmo1677	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1670	 41.80	+1	1732926..1734779	-	617	16803718	-	lmo1678	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
1671	 44.16	+1	1734776..1735948	-	390	16803719	-	lmo1679	-	cystathionine beta-lyase
1672	 43.91	+1	1735941..1737065	-	374	16803720	-	lmo1680	-	hypothetical protein
1673	 41.56	+1	1737087..1739384	-	765	16803721	-	lmo1681	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1674	 38.86	0	1739674..1740849	-	391	16803722	-	lmo1682	-	hypothetical protein
1675	 36.24	0	1748263..1748709	-	148	16803723	-	lmo1683	-	hypothetical protein
1676	 33.76	-1	1748792..1749733	-	313	16803724	-	lmo1684	-	hypothetical protein
1677	 41.49	+1	1749878..1751176	+	432	16803725	gsaB	lmo1685	-	glutamate-1-semialdehyde aminotransferase
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.