IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1547	 34.58	-1	1591448..1592170	-	240	16803595	hemD	lmo1555	-	uroporphyrinogen-III synthase
1548	 37.63	0	1592167..1593096	-	309	16803596	hemC	lmo1556	-	porphobilinogen deaminase
1549	 37.00	0	1593100..1594407	-	435	16803597	hemA	lmo1557	-	glutamyl-tRNA reductase
1550	 37.44	0	1594535..1595119	-	194	16803598	-	lmo1558	-	GTPase EngB
1551	 39.63	0	1595227..1597149	-	640	16803599	thrS	lmo1559	-	threonyl-tRNA synthetase
1552	 38.31	0	1597499..1598422	-	307	16803600	dnaI	lmo1560	-	primosomal protein DnaI
1553	 37.69	0	1598432..1599808	-	458	16803601	dnaB	lmo1561	-	chromosome replication initiation / membrane attachment protein DnaB
1554	 39.35	0	1599814..1600278	-	154	16803602	-	lmo1562	-	transcriptional regulator NrdR
1555	 37.48	0	1600356..1600958	-	200	16803603	-	lmo1563	-	hypothetical protein
1556	 39.66	0	1600975..1601796	-	273	16803604	mutM	lmo1564	-	hypothetical protein
1557	 37.60	0	1601820..1604447	-	875	16803605	polA	lmo1565	-	DNA polymerase I
1558	 39.98	0	1604613..1605875	-	420	16803606	citC	lmo1566	-	isocitrate dehydrogenase
1559	 37.52	0	1605895..1607016	-	373	16803607	citZ	lmo1567	-	methylcitrate synthase
1560	 38.10	0	1607053..1607514	-	153	16803608	-	lmo1568	-	hypothetical protein
1561	 32.01	-1	1607671..1608048	-	125	16803609	fxsA	lmo1569	-	FxsA
1562	 39.82	0	1608166..1609923	-	585	16803610	pykA	lmo1570	-	pyruvate kinase
1563	 40.42	0	1610206..1611165	-	319	16803611	pfkA	lmo1571	-	6-phosphofructokinase
1564	 39.60	0	1611449..1612405	-	318	16803612	accA	lmo1572	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1565	 38.98	0	1612395..1613279	-	294	16803613	accD	lmo1573	-	acetyl-CoA carboxylase subunit beta
1566	 39.31	0	1613497..1616823	-	1108	16803614	dnaE	lmo1574	-	hypothetical protein
1567	 41.77	+1	1616945..1617880	-	311	16803615	-	lmo1575	-	hypothetical protein
1568	 39.27	0	1617901..1619214	-	437	16803616	-	lmo1576	-	hypothetical protein
1569	 39.74	0	1619240..1619926	-	228	16803617	-	lmo1577	-	hypothetical protein
1570	 40.98	0	1620091..1621188	+	365	16803618	-	lmo1578	-	hypothetical protein
1571	 40.61	0	1621230..1622342	-	370	16803619	-	lmo1579	-	hypothetical protein
1572	 39.57	0	1622583..1623047	+	154	16803620	-	lmo1580	-	hypothetical protein
1573	 39.70	0	1623099..1624292	-	397	16803621	ackA	lmo1581	-	acetate kinase
1574	 36.64	0	1624316..1625314	-	332	16803622	-	lmo1582	-	hypothetical protein
1575	 38.15	0	1625505..1626002	-	165	16803623	-	lmo1583	-	hypothetical protein
1576	 36.69	0	1626064..1626600	-	178	16803624	-	lmo1584	-	hypothetical protein
1577	 38.86	0	1626620..1627633	-	337	16803625	-	lmo1585	-	hypothetical protein
1578	 34.83	0	1627812..1628615	+	267	16803626	ppnK	lmo1586	-	inorganic polyphosphate/ATP-NAD kinase
1579	 39.54	0	1628647..1629597	-	316	16803627	argF	lmo1587	-	ornithine carbamoyltransferase
1580	 39.71	0	1629594..1630754	-	386	16803628	argD	lmo1588	-	acetylornithine aminotransferase
1581	 40.24	0	1630751..1631503	-	250	16803629	argB	lmo1589	-	acetylglutamate kinase
1582	 41.02	0	1631516..1632712	-	398	16803630	argJ	lmo1590	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1583	 39.92	0	1632728..1633759	-	343	16803631	argC	lmo1591	-	N-acetyl-gamma-glutamyl-phosphate reductase
1584	 39.77	0	1633933..1635144	-	403	16803632	-	lmo1592	-	hypothetical protein
1585	 38.77	0	1635146..1636285	-	379	16803633	-	lmo1593	-	hypothetical protein
1586	 36.83	0	1636412..1638127	-	571	16803634	-	lmo1594	-	septation ring formation regulator EzrA
1587	 37.01	0	1638420..1638908	+	162	16803635	-	lmo1595	-	hypothetical protein
1588	 41.79	+1	1639120..1639722	+	200	16803636	rpsD	lmo1596	-	30S ribosomal protein S4
1589	 35.26	0	1640225..1641004	-	259	16803637	-	lmo1597	-	hypothetical protein
1590	 38.25	0	1641284..1642543	-	419	16803638	tyrS	lmo1598	-	tyrosyl-tRNA synthetase
1591	 37.40	0	1642865..1643872	-	335	16803639	ccpA	lmo1599	-	catabolite control protein A
1592	 36.65	0	1644106..1645191	-	361	16803640	aroA	lmo1600	-	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
1593	 36.00	0	1645412..1645936	-	174	16803641	-	lmo1601	-	hypothetical protein
1594	 36.62	0	1645958..1646413	-	151	16803642	-	lmo1602	-	hypothetical protein
1595	 38.90	0	1646669..1647781	+	370	16803643	-	lmo1603	-	hypothetical protein
1596	 39.38	0	1647821..1648366	-	181	16803644	-	lmo1604	-	hypothetical protein
1597	 38.24	0	1648511..1649854	-	447	16803645	murC	lmo1605	-	UDP-N-acetylmuramate--L-alanine ligase
1598	 39.50	0	1650149..1652500	-	783	16803646	-	lmo1606	-	hypothetical protein
1599	 38.19	0	1652810..1653427	-	205	16803647	pheT	lmo1607	-	hypothetical protein
1600	 39.20	0	1653433..1654233	-	266	16803648	-	lmo1608	-	hypothetical protein
1601	 33.97	-1	1654268..1654579	-	103	16803649	-	lmo1609	-	hypothetical protein
1602	 38.36	0	1654691..1654909	-	72	16803650	-	lmo1610	-	hypothetical protein
1603	 41.62	+1	1654902..1655975	-	357	16803651	-	lmo1611	-	hypothetical protein
1604	 40.38	0	1656173..1656484	+	103	16803652	-	lmo1612	-	hypothetical protein
1605	 38.15	0	1656521..1656769	-	82	16803653	-	lmo1613	-	hypothetical protein
1606	 38.38	0	1656903..1657754	-	283	16803654	-	lmo1614	-	hypothetical protein
1607	 35.81	0	1657815..1658459	-	214	16803655	trmB	lmo1615	-	tRNA (guanine-N(7))-methyltransferase
1608	 38.44	0	1658466..1659248	-	260	16803656	-	lmo1616	-	hypothetical protein
1609	 40.27	0	1659457..1660926	-	489	16803657	-	lmo1617	-	hypothetical protein
1610	 37.64	0	1660923..1661363	-	146	16803658	-	lmo1618	-	hypothetical protein
1611	 37.01	0	1661588..1662457	-	289	16803659	daaA	lmo1619	-	D-amino acid aminotransferase
1612	 41.97	+1	1662570..1663982	-	470	16803660	-	lmo1620	-	dipeptidase PepV
1613	 36.71	0	1664057..1664470	-	137	16803661	-	lmo1621	-	hypothetical protein
1614	 43.44	+1	1664575..1665405	+	276	16803662	-	lmo1622	-	hypothetical protein
1615	 37.16	0	1665444..1666097	-	217	16803663	-	lmo1623	-	hypothetical protein
1616	 37.98	0	1666107..1667720	-	537	16803664	-	lmo1624	-	hypothetical protein
1617	 36.18	0	1667831..1669444	-	537	16803665	-	lmo1625	-	hypothetical protein
1618	 34.47	-1	1669529..1669966	-	145	16803666	-	lmo1626	-	hypothetical protein
1619	 38.37	0	1670037..1670810	-	257	16803667	trpA	lmo1627	-	tryptophan synthase subunit alpha
1620	 40.73	0	1670803..1672005	-	400	16803668	trpB	lmo1628	-	tryptophan synthase subunit beta
1621	 38.75	0	1672008..1672616	-	202	16803669	trpF	lmo1629	-	phosphoribosyl anthranilate isomerase
1622	 40.97	0	1672613..1673371	-	252	16803670	trpC	lmo1630	-	indole-3-glycerol-phosphate synthase
1623	 42.25	+1	1673368..1674387	-	339	16803671	trpD	lmo1631	-	anthranilate phosphoribosyltransferase
1624	 38.45	0	1674359..1674964	-	201	16803672	trpG	lmo1632	-	anthranilate synthase component II
1625	 39.05	0	1674961..1676325	-	454	16803673	trpE	lmo1633	-	anthranilate synthase component I
1626	 39.29	0	1677409..1680009	+	866	16803674	-	lmo1634	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
1627	 40.79	0	1680132..1680560	+	142	16803675	-	lmo1635	-	hypothetical protein
1628	 38.22	0	1680644..1681564	+	306	16803676	-	lmo1636	-	hypothetical protein
1629	 38.95	0	1681561..1682628	+	355	16803677	-	lmo1637	-	hypothetical protein
1630	 38.36	0	1682664..1683638	-	324	16803678	-	lmo1638	-	hypothetical protein
1631	 37.46	0	1683635..1684216	-	193	16803679	-	lmo1639	-	hypothetical protein
1632	 36.32	0	1684229..1684462	-	77	16803680	-	lmo1640	-	hypothetical protein
1633	 42.47	+1	1684563..1687265	-	900	16803681	citB	lmo1641	-	aconitate hydratase
1634	 34.45	-1	1687420..1688223	-	267	16803682	-	lmo1642	-	hypothetical protein
1635	 34.75	0	1688248..1688670	-	140	16803683	-	lmo1643	-	hypothetical protein
1636	 37.99	0	1688670..1691888	-	1072	16803684	-	lmo1644	-	hypothetical protein
1637	 38.02	0	1691972..1695043	-	1023	16803685	-	lmo1645	-	hypothetical protein
1638	 40.09	0	1695040..1696164	-	374	16803686	-	lmo1646	-	hypothetical protein
1639	 36.29	0	1696280..1696888	+	202	16803687	-	lmo1647	-	hypothetical protein
1640	 33.06	-1	1696940..1697302	-	120	16803688	-	lmo1648	-	hypothetical protein
1641	 39.15	0	1697476..1697991	-	171	16803689	-	lmo1649	-	hypothetical protein
1642	 35.79	0	1698165..1698653	-	162	16803690	-	lmo1650	-	hypothetical protein
1643	 37.98	0	1698734..1700539	-	601	16803691	-	lmo1651	-	hypothetical protein
1644	 39.44	0	1700523..1702292	-	589	16803692	-	lmo1652	-	hypothetical protein
1645	 33.82	-1	1702695..1703315	-	206	16803693	-	lmo1653	-	putative cellsurface protein
1646	 33.33	-1	1703330..1703824	-	164	16803694	-	lmo1654	-	putative cellsurface protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.