IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1494	 41.01	0	1531716..1532132	-	138	16803542	-	lmo1502	-	hypothetical protein
1495	 34.80	0	1532129..1532401	-	90	16803543	-	lmo1503	-	hypothetical protein
1496	 39.47	0	1532493..1535132	-	879	16803544	alaS	lmo1504	-	alanyl-tRNA synthetase
1497	 36.35	0	1535439..1536134	-	231	16803545	-	lmo1505	-	hypothetical protein
1498	 38.91	0	1536143..1537648	-	501	16803546	-	lmo1506	-	hypothetical protein
1499	 36.83	0	1537815..1538501	+	228	16803547	-	lmo1507	-	hypothetical protein
1500	 35.35	0	1538498..1539937	+	479	16803548	-	lmo1508	-	hypothetical protein
1501	 40.38	0	1539979..1542375	-	798	16803549	-	lmo1509	-	hypothetical protein
1502	 36.93	0	1542403..1543041	-	212	16803550	-	lmo1510	-	hypothetical protein
1503	 36.71	0	1543082..1543822	-	246	16803551	-	lmo1511	-	hypothetical protein
1504	 39.78	0	1543940..1545055	-	371	16803552	-	lmo1512	-	hypothetical protein
1505	 39.86	0	1545074..1546222	-	382	16803553	-	lmo1513	-	hypothetical protein
1506	 40.61	0	1546608..1547885	-	425	16803554	-	lmo1514	-	recombination factor protein RarA
1507	 39.48	0	1548034..1548456	+	140	16803555	-	lmo1515	-	hypothetical protein
1508	 40.38	0	1548701..1549906	+	401	16803556	-	lmo1516	-	hypothetical protein
1509	 39.07	0	1549920..1550285	+	121	16803557	-	lmo1517	-	hypothetical protein
1510	 37.53	0	1550435..1550815	+	126	16803558	-	lmo1518	-	hypothetical protein
1511	 39.19	0	1550854..1552629	-	591	16803559	aspS	lmo1519	-	aspartyl-tRNA synthetase
1512	 38.50	0	1552632..1553909	-	425	16803560	hisS	lmo1520	-	histidyl-tRNA synthetase
1513	 39.72	0	1554360..1555643	+	427	16803561	-	lmo1521	-	hypothetical protein
1514	 39.96	0	1555680..1556132	-	150	16803562	-	lmo1522	-	D-tyrosyl-tRNA deacylase
1515	 37.66	0	1556148..1558364	-	738	16803563	relA	lmo1523	-	hypothetical protein
1516	 38.12	0	1558570..1559091	-	173	16803564	apt	lmo1524	-	adenine phosphoribosyltransferase
1517	 39.33	0	1559081..1561432	-	783	16803565	-	lmo1525	-	hypothetical protein
1518	 33.04	-1	1561538..1561882	-	114	16803566	-	lmo1526	-	hypothetical protein
1519	 38.06	0	1561978..1564242	-	754	16803567	-	lmo1527	-	bifunctional preprotein translocase subunit SecD/SecF
1520	 35.05	0	1564343..1564633	-	96	16803568	-	lmo1528	-	hypothetical protein
1521	 32.73	-1	1564776..1565105	-	109	16803569	-	lmo1529	-	hypothetical protein
1522	 40.88	0	1565139..1566278	-	379	16803570	tgt	lmo1530	-	queuine tRNA-ribosyltransferase
1523	 39.94	0	1566365..1567393	-	342	16803571	-	lmo1531	-	hypothetical protein
1524	 40.97	0	1567397..1568404	-	335	16803572	ruvB	lmo1532	-	Holliday junction DNA helicase B
1525	 38.78	0	1568420..1569025	-	201	16803573	ruvA	lmo1533	-	hypothetical protein
1526	 40.60	0	1569149..1570084	-	311	16803574	-	lmo1534	-	hypothetical protein
1527	 38.29	0	1570154..1570879	-	241	16803575	-	lmo1535	-	hypothetical protein
1528	 39.69	0	1570990..1571838	-	282	16803576	-	lmo1536	-	prephenate dehydratase
1529	 41.40	+1	1571905..1573194	-	429	16803577	obgE	lmo1537	-	GTPase ObgE
1530	 39.02	0	1573354..1574847	-	497	16803578	glpK	lmo1538	-	glycerol kinase
1531	 42.00	+1	1574922..1575740	-	272	16803579	-	lmo1539	-	hypothetical protein
1532	 41.92	+1	1576107..1576397	-	96	16803580	rpmA	lmo1540	-	50S ribosomal protein L27
1533	 40.25	0	1576411..1576728	-	105	16803581	-	lmo1541	-	hypothetical protein
1534	 37.54	0	1576747..1577055	-	102	16803582	rplU	lmo1542	-	50S ribosomal protein L21
1535	 36.42	0	1577212..1578573	-	453	16803583	-	lmo1543	-	hypothetical protein
1536	 37.20	0	1578625..1579425	-	266	16803584	minD	lmo1544	-	hypothetical protein
1537	 33.92	-1	1579428..1580105	-	225	16803585	minC	lmo1545	-	septum formation inhibitor
1538	 29.87	-2	1580283..1580801	-	172	16803586	mreD	lmo1546	-	hypothetical protein
1539	 37.05	0	1580804..1581691	-	295	16803587	mreC	lmo1547	-	hypothetical protein
1540	 37.97	0	1581777..1582790	-	337	16803588	mreB	lmo1548	-	hypothetical protein
1541	 36.00	0	1583242..1583916	-	224	16803589	radC	lmo1549	-	DNA repair protein RadC
1542	 27.57	-2	1583928..1584638	-	236	16803590	comC	lmo1550	-	hypothetical protein
1543	 35.04	0	1584850..1586139	-	429	16803591	folC	lmo1551	-	hypothetical protein
1544	 35.56	0	1586201..1588852	-	883	16803592	valS	lmo1552	-	valyl-tRNA synthetase
1545	 40.31	0	1589175..1590464	-	429	16803593	hemL	lmo1553	-	glutamate-1-semialdehyde aminotransferase
1546	 36.72	0	1590477..1591451	-	324	16803594	hemB	lmo1554	-	delta-aminolevulinic acid dehydratase
1547	 34.58	-1	1591448..1592170	-	240	16803595	hemD	lmo1555	-	uroporphyrinogen-III synthase
1548	 37.63	0	1592167..1593096	-	309	16803596	hemC	lmo1556	-	porphobilinogen deaminase
1549	 37.00	0	1593100..1594407	-	435	16803597	hemA	lmo1557	-	glutamyl-tRNA reductase
1550	 37.44	0	1594535..1595119	-	194	16803598	-	lmo1558	-	GTPase EngB
1551	 39.63	0	1595227..1597149	-	640	16803599	thrS	lmo1559	-	threonyl-tRNA synthetase
1552	 38.31	0	1597499..1598422	-	307	16803600	dnaI	lmo1560	-	primosomal protein DnaI
1553	 37.69	0	1598432..1599808	-	458	16803601	dnaB	lmo1561	-	chromosome replication initiation / membrane attachment protein DnaB
1554	 39.35	0	1599814..1600278	-	154	16803602	-	lmo1562	-	transcriptional regulator NrdR
1555	 37.48	0	1600356..1600958	-	200	16803603	-	lmo1563	-	hypothetical protein
1556	 39.66	0	1600975..1601796	-	273	16803604	mutM	lmo1564	-	hypothetical protein
1557	 37.60	0	1601820..1604447	-	875	16803605	polA	lmo1565	-	DNA polymerase I
1558	 39.98	0	1604613..1605875	-	420	16803606	citC	lmo1566	-	isocitrate dehydrogenase
1559	 37.52	0	1605895..1607016	-	373	16803607	citZ	lmo1567	-	methylcitrate synthase
1560	 38.10	0	1607053..1607514	-	153	16803608	-	lmo1568	-	hypothetical protein
1561	 32.01	-1	1607671..1608048	-	125	16803609	fxsA	lmo1569	-	FxsA
1562	 39.82	0	1608166..1609923	-	585	16803610	pykA	lmo1570	-	pyruvate kinase
1563	 40.42	0	1610206..1611165	-	319	16803611	pfkA	lmo1571	-	6-phosphofructokinase
1564	 39.60	0	1611449..1612405	-	318	16803612	accA	lmo1572	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1565	 38.98	0	1612395..1613279	-	294	16803613	accD	lmo1573	-	acetyl-CoA carboxylase subunit beta
1566	 39.31	0	1613497..1616823	-	1108	16803614	dnaE	lmo1574	-	hypothetical protein
1567	 41.77	+1	1616945..1617880	-	311	16803615	-	lmo1575	-	hypothetical protein
1568	 39.27	0	1617901..1619214	-	437	16803616	-	lmo1576	-	hypothetical protein
1569	 39.74	0	1619240..1619926	-	228	16803617	-	lmo1577	-	hypothetical protein
1570	 40.98	0	1620091..1621188	+	365	16803618	-	lmo1578	-	hypothetical protein
1571	 40.61	0	1621230..1622342	-	370	16803619	-	lmo1579	-	hypothetical protein
1572	 39.57	0	1622583..1623047	+	154	16803620	-	lmo1580	-	hypothetical protein
1573	 39.70	0	1623099..1624292	-	397	16803621	ackA	lmo1581	-	acetate kinase
1574	 36.64	0	1624316..1625314	-	332	16803622	-	lmo1582	-	hypothetical protein
1575	 38.15	0	1625505..1626002	-	165	16803623	-	lmo1583	-	hypothetical protein
1576	 36.69	0	1626064..1626600	-	178	16803624	-	lmo1584	-	hypothetical protein
1577	 38.86	0	1626620..1627633	-	337	16803625	-	lmo1585	-	hypothetical protein
1578	 34.83	0	1627812..1628615	+	267	16803626	ppnK	lmo1586	-	inorganic polyphosphate/ATP-NAD kinase
1579	 39.54	0	1628647..1629597	-	316	16803627	argF	lmo1587	-	ornithine carbamoyltransferase
1580	 39.71	0	1629594..1630754	-	386	16803628	argD	lmo1588	-	acetylornithine aminotransferase
1581	 40.24	0	1630751..1631503	-	250	16803629	argB	lmo1589	-	acetylglutamate kinase
1582	 41.02	0	1631516..1632712	-	398	16803630	argJ	lmo1590	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1583	 39.92	0	1632728..1633759	-	343	16803631	argC	lmo1591	-	N-acetyl-gamma-glutamyl-phosphate reductase
1584	 39.77	0	1633933..1635144	-	403	16803632	-	lmo1592	-	hypothetical protein
1585	 38.77	0	1635146..1636285	-	379	16803633	-	lmo1593	-	hypothetical protein
1586	 36.83	0	1636412..1638127	-	571	16803634	-	lmo1594	-	septation ring formation regulator EzrA
1587	 37.01	0	1638420..1638908	+	162	16803635	-	lmo1595	-	hypothetical protein
1588	 41.79	+1	1639120..1639722	+	200	16803636	rpsD	lmo1596	-	30S ribosomal protein S4
1589	 35.26	0	1640225..1641004	-	259	16803637	-	lmo1597	-	hypothetical protein
1590	 38.25	0	1641284..1642543	-	419	16803638	tyrS	lmo1598	-	tyrosyl-tRNA synthetase
1591	 37.40	0	1642865..1643872	-	335	16803639	ccpA	lmo1599	-	catabolite control protein A
1592	 36.65	0	1644106..1645191	-	361	16803640	aroA	lmo1600	-	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
1593	 36.00	0	1645412..1645936	-	174	16803641	-	lmo1601	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.