IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.00   STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
105	 41.17	0	110013..112283	+	756	16802153	-	lmo0105	-	hypothetical protein
106	 39.53	0	112386..113288	+	300	16802154	-	lmo0106	-	hypothetical protein
107	 40.57	0	113313..115094	-	593	16802155	-	lmo0107	-	hypothetical protein
108	 39.93	0	115087..116829	-	580	16802156	-	lmo0108	-	hypothetical protein
109	 37.77	0	116972..117805	+	277	16802157	-	lmo0109	-	hypothetical protein
110	 42.11	+1	117841..118956	+	371	16802158	-	lmo0110	-	hypothetical protein
111	 37.01	0	119063..119770	+	235	16802159	-	lmo0111	-	hypothetical protein
112	 36.64	0	119740..120435	-	231	16802160	-	lmo0112	-	hypothetical protein
113	 33.11	-1	120654..121106	-	150	16802161	-	lmo0113	-	hypothetical protein
114	 36.01	0	121112..121447	-	111	16802162	-	lmo0114	-	hypothetical protein
115	 34.73	0	121664..122092	+	142	16802163	lmaD	lmo0115	-	hypothetical protein
116	 36.93	0	122104..122520	+	138	16802164	lmaC	lmo0116	-	hypothetical protein
117	 36.92	0	122798..123187	+	129	16802165	lmaB	lmo0117	-	antigen B
118	 42.11	+1	123200..123712	+	170	16802166	lmaA	lmo0118	-	antigen A
119	 32.67	-1	123760..124062	+	100	16802167	-	lmo0119	-	hypothetical protein
120	 36.05	0	124104..124508	+	134	16802168	-	lmo0120	-	hypothetical protein
121	 40.29	0	124495..126363	+	622	16802169	-	lmo0121	-	hypothetical protein
122	 38.46	0	126360..127178	+	272	16802170	-	lmo0122	-	hypothetical protein
123	 35.27	0	127188..128324	+	378	16802171	-	lmo0123	-	hypothetical protein
124	 37.33	0	128314..128613	+	99	16802172	-	lmo0124	-	hypothetical protein
125	 37.50	0	128628..129203	+	191	16802173	-	lmo0125	-	hypothetical protein
126	 41.25	0	129218..129697	+	159	16802174	-	lmo0126	-	hypothetical protein
127	 37.62	0	129694..130230	+	178	16802175	-	lmo0127	-	hypothetical protein
128	 38.06	0	130249..130671	+	140	16802176	-	lmo0128	-	hypothetical protein
129	 34.71	0	130652..131380	+	242	16802177	-	lmo0129	-	hypothetical protein
130	 42.38	+1	131419..133773	-	784	16802178	-	lmo0130	-	hypothetical protein
131	 35.87	0	133961..134710	+	249	16802179	-	lmo0131	-	hypothetical protein
132	 42.94	+1	134782..136290	-	502	16802180	-	lmo0132	-	inositol-5-monophosphate dehydrogenase
133	 43.16	+1	136469..136702	+	77	16802181	-	lmo0133	-	hypothetical protein
134	 39.43	0	136714..136992	+	92	16802182	-	lmo0134	-	hypothetical protein
135	 38.92	0	137323..138897	+	524	16802183	-	lmo0135	-	hypothetical protein
136	 40.17	0	138999..139949	+	316	16802184	-	lmo0136	-	hypothetical protein
137	 45.19	+2	139960..140853	+	297	16802185	-	lmo0137	-	hypothetical protein
138	 40.70	0	141052..141336	+	94	16802186	-	lmo0138	-	hypothetical protein
139	 42.55	+1	141337..141705	+	122	16802187	-	lmo0139	-	hypothetical protein
140	 39.67	0	141618..143006	+	462	16802188	-	lmo0140	-	hypothetical protein
141	 25.10	-2	143016..143258	+	80	16802189	-	lmo0141	-	hypothetical protein
142	 28.29	-2	143366..143722	+	118	16802190	-	lmo0142	-	hypothetical protein
143	 26.55	-2	144097..144273	+	58	16802191	-	lmo0143	-	hypothetical protein
144	 26.13	-2	144397..144840	+	147	16802192	-	lmo0144	-	hypothetical protein
145	 41.38	+1	145085..145171	+	28	16802193	-	lmo0145	-	hypothetical protein
146	 29.47	-2	145354..145560	+	68	16802194	-	lmo0146	-	hypothetical protein
147	 26.94	-2	145869..146306	+	145	16802195	-	lmo0147	-	hypothetical protein
148	 28.77	-2	146306..146656	+	116	16802196	-	lmo0148	-	hypothetical protein
149	 38.35	0	146764..147381	+	205	16802197	-	lmo0149	-	hypothetical protein
150	 27.60	-2	147399..147764	+	121	16802198	-	lmo0150	-	hypothetical protein
151	 30.15	-2	147884..148291	+	135	16802199	-	lmo0151	-	hypothetical protein
152	 41.12	0	148354..150009	-	551	16802200	-	lmo0152	-	hypothetical protein
153	 39.38	0	150232..151173	+	313	16802201	-	lmo0153	-	hypothetical protein
154	 39.01	0	151186..151890	+	234	16802202	-	lmo0154	-	hypothetical protein
155	 41.39	+1	151839..152645	+	268	16802203	-	lmo0155	-	hypothetical protein
156	 29.81	-2	152648..153328	-	226	16802204	-	lmo0156	-	hypothetical protein
157	 39.70	0	153608..155947	+	779	16802205	-	lmo0157	-	hypothetical protein
158	 37.02	0	155993..156805	+	270	16802206	-	lmo0158	-	hypothetical protein
159	 40.60	0	157089..159470	+	793	16802207	-	lmo0159	-	peptidoglycan binding protein
160	 38.11	0	159663..161378	+	571	16802208	-	lmo0160	-	peptidoglycan binding protein
161	 36.82	0	161420..162250	-	276	16802209	-	lmo0161	-	hypothetical protein
162	 42.40	+1	162467..163459	+	330	16802210	-	lmo0162	-	DNA polymerase III subunit delta'
163	 42.09	+1	163465..164298	+	277	16802211	-	lmo0163	-	hypothetical protein
164	 40.00	0	164309..164698	+	129	16802212	-	lmo0164	-	DNA replication intiation control protein YabA
165	 37.72	0	164756..165508	+	250	16802213	-	lmo0165	-	hypothetical protein
166	 37.36	0	165492..165764	+	90	16802214	-	lmo0166	-	GIY-YIG nuclease superfamily protein
167	 41.38	+1	165761..166642	+	293	16802215	-	lmo0167	-	hypothetical protein
168	 36.84	0	166687..166971	-	94	16802216	-	lmo0168	-	hypothetical protein
169	 37.53	0	167086..167943	+	285	16802217	-	lmo0169	-	hypothetical protein
170	 36.57	0	168005..169270	+	421	16802218	-	lmo0170	-	hypothetical protein
171	 36.41	0	169510..172008	+	832	16802219	-	lmo0171	-	hypothetical protein
172	 34.31	-1	172903..173208	-	101	16802220	-	lmo0174	-	hypothetical protein
173	 36.38	0	173309..174556	-	415	16802221	-	lmo0175	-	peptidoglycan binding protein
174	 38.33	0	174834..175694	+	286	16802222	-	lmo0176	-	hypothetical protein
175	 38.40	0	175766..177760	+	664	16802223	metS	lmo0177	-	methionyl-tRNA synthetase
176	 36.71	0	177924..179138	+	404	16802224	-	lmo0178	-	hypothetical protein
177	 37.54	0	179174..180052	+	292	16802225	-	lmo0179	-	hypothetical protein
178	 36.98	0	180052..180900	+	282	16802226	-	lmo0180	-	hypothetical protein
179	 37.07	0	180928..182184	+	418	16802227	-	lmo0181	-	hypothetical protein
180	 39.75	0	182267..185569	+	1100	16802228	-	lmo0182	-	hypothetical protein
181	 40.27	0	185572..187863	+	763	16802229	-	lmo0183	-	hypothetical protein
182	 38.87	0	187867..189528	+	553	16802230	-	lmo0184	-	hypothetical protein
183	 40.18	0	189625..190398	+	257	16802231	-	lmo0185	-	hypothetical protein
184	 36.02	0	190690..191916	+	408	16802232	-	lmo0186	-	hypothetical protein
185	 40.97	0	192018..192593	+	191	16802233	-	lmo0187	-	hypothetical protein
186	 38.51	0	192586..193473	+	295	16802234	ksgA	lmo0188	-	dimethyladenosine transferase
187	 34.88	0	193593..193850	+	85	16802235	-	lmo0189	-	hypothetical protein
188	 41.38	+1	193989..194870	+	293	16802236	-	lmo0190	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
189	 39.57	0	194892..195629	+	245	16802237	-	lmo0191	-	hypothetical protein
190	 39.80	0	195793..196611	+	272	16802238	-	lmo0192	-	purine operon repressor
191	 36.87	0	196786..197463	+	225	16802239	-	lmo0193	-	hypothetical protein
192	 40.26	0	197512..198204	+	230	16802240	-	lmo0194	-	ABC transporter, ATP-binding protein
193	 38.30	0	198201..199409	+	402	16802241	-	lmo0195	-	hypothetical protein
194	 42.39	+1	200094..200402	+	102	16802242	-	lmo0196	-	regulatory protein SpoVG
195	 40.45	0	200522..200830	+	102	16802243	-	lmo0197	-	regulatory protein SpoVG
196	 38.79	0	201217..202590	+	457	16802244	gcaD	lmo0198	-	hypothetical protein
197	 38.98	0	202641..203597	+	318	16802245	prs	lmo0199	-	phosphoribosyl pyrophosphate synthetase
198	 33.33	-1	203640..204353	-	237	16802246	prfA	lmo0200	-	listeriolysin positive regulatory protein
199	 35.32	0	204624..205577	-	317	16802247	plcA	lmo0201	-	phosphatidylinositol-specific phospholipase c
200	 35.97	0	205819..207408	+	529	16802248	hly	lmo0202	-	listeriolysin O precursor
201	 38.42	0	207739..209271	+	510	16802249	mpl	lmo0203	-	Zinc metalloproteinase precursor
202	 40.05	0	209470..211389	+	639	16802250	actA	lmo0204	-	actin-assembly inducing protein precursor
203	 35.52	0	211425..212294	+	289	16802251	plcB	lmo0205	-	phospholipase C
204	 30.56	-2	212366..212689	+	107	16802252	-	lmo0206	-	hypothetical protein
38.00	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.