IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.00   STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1425	 38.48	0	1464209..1465549	-	446	16803473	-	lmo1433	-	hypothetical protein
1426	 36.51	0	1465638..1467305	-	555	16803474	-	lmo1434	-	hypothetical protein
1427	 38.21	0	1467325..1468206	-	293	16803475	dapA	lmo1435	-	dihydrodipicolinate synthase
1428	 38.86	0	1468221..1469432	-	403	16803476	-	lmo1436	-	aspartate kinase I
1429	 38.89	0	1469444..1470487	-	347	16803477	-	lmo1437	-	hypothetical protein
1430	 38.09	0	1470685..1472850	-	721	16803478	-	lmo1438	-	hypothetical protein
1431	 40.39	0	1472980..1473588	-	202	16803479	sod	lmo1439	-	superoxide dismutase
1432	 34.96	0	1473889..1474689	+	266	16803480	-	lmo1440	-	hypothetical protein
1433	 39.11	0	1474802..1475908	+	368	16803481	ispG	lmo1441	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1434	 36.86	0	1475944..1476651	+	235	16803482	-	lmo1442	-	hypothetical protein
1435	 35.17	0	1476642..1476968	+	108	16803483	-	lmo1443	-	hypothetical protein
1436	 33.67	-1	1477050..1477934	-	294	16803484	-	lmo1444	-	hypothetical protein
1437	 34.98	0	1478071..1478496	-	141	16803485	zurR	lmo1445	-	transcriptional regulator ZurR (ferric uptake regulation)
1438	 34.02	-1	1478477..1479355	-	292	16803486	zurM	lmo1446	-	metal (zinc) transport protein (ABC transporter, permease protein)
1439	 38.37	0	1479330..1480103	-	257	16803487	zurA	lmo1447	-	metal (zinc) transport protein(ABC transporter, ATP-binding protein)
1440	 37.86	0	1480246..1481172	-	308	16803488	-	lmo1448	-	putative manganese-dependent inorganic pyrophosphatase
1441	 39.26	0	1481188..1482081	-	297	16803489	-	lmo1449	-	endonuclease IV
1442	 37.77	0	1482096..1483403	-	435	16803490	-	lmo1450	-	hypothetical protein
1443	 39.76	0	1483549..1484544	+	331	16803491	ispH	lmo1451	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1444	 36.01	0	1484590..1485711	-	373	16803492	-	lmo1452	-	hypothetical protein
1445	 37.30	0	1485708..1486412	-	234	16803493	-	lmo1453	-	hypothetical protein
1446	 40.18	0	1486480..1487604	-	374	16803494	rpoD	lmo1454	-	RNA polymerase sigma factor RpoD
1447	 37.43	0	1487699..1489579	-	626	16803495	dnaG	lmo1455	-	DNA primase
1448	 37.64	0	1489599..1490039	-	146	16803496	-	lmo1456	-	hypothetical protein
1449	 37.58	0	1490229..1491053	-	274	16803497	-	lmo1457	-	hypothetical protein
1450	 36.91	0	1491087..1493153	-	688	16803498	glyS	lmo1458	-	hypothetical protein
1451	 39.96	0	1493146..1494036	-	296	16803499	glyQ	lmo1459	-	glycyl-tRNA synthetase subunit alpha
1452	 36.72	0	1494317..1495084	-	255	16803500	recO	lmo1460	-	DNA repair protein RecO
1453	 34.13	-1	1495221..1495850	+	209	16803501	-	lmo1461	-	hypothetical protein
1454	 34.44	-1	1495899..1496804	-	301	16803502	era	lmo1462	-	GTP-binding protein Era
1455	 40.66	0	1496801..1497196	-	131	16803503	-	lmo1463	-	hypothetical protein
1456	 34.09	-1	1497221..1497616	-	131	16803504	-	lmo1464	-	hypothetical protein
1457	 39.09	0	1497594..1498079	-	161	16803505	-	lmo1465	-	putative metalloprotease
1458	 35.61	0	1498096..1500252	-	718	16803506	-	lmo1466	-	hypothetical protein
1459	 36.88	0	1500268..1501227	-	319	16803507	-	lmo1467	-	hypothetical protein
1460	 40.94	0	1501415..1501861	-	148	16803508	-	lmo1468	-	hypothetical protein
1461	 36.78	0	1501881..1502054	-	57	16803509	rpsU	lmo1469	-	30S ribosomal protein S21
1462	 39.97	0	1502252..1503019	-	255	16803510	-	lmo1470	-	hypothetical protein
1463	 39.37	0	1503020..1503964	-	314	16803511	prmA	lmo1471	-	ribosomal protein L11 methyltransferase
1464	 42.15	+1	1504037..1505170	-	377	16803512	dnaJ	lmo1472	-	heat shock protein DnaJ
1465	 38.98	0	1505312..1507153	-	613	16803513	dnaK	lmo1473	-	class I heat-shock protein (molecular chaperone) DnaK
1466	 37.15	0	1507187..1507762	-	191	16803514	grpE	lmo1474	-	heat shock protein GrpE
1467	 37.67	0	1507804..1508841	-	345	16803515	hrcA	lmo1475	-	heat-inducible transcription repressor
1468	 37.56	0	1508988..1510145	-	385	16803516	hemN	lmo1476	-	coproporphyrinogen III oxidase
1469	 36.73	0	1510234..1511262	-	342	16803517	-	lmo1477	-	hypothetical protein
1470	 32.42	-1	1511375..1511812	+	145	16803518	-	lmo1478	-	hypothetical protein
1471	 37.55	0	1511858..1513684	-	608	16803519	lepA	lmo1479	-	GTP-binding protein LepA
1472	 39.22	0	1513917..1514171	+	84	16803520	rpsT	lmo1480	-	30S ribosomal protein S20
1473	 33.33	-1	1514257..1515288	-	343	16803521	holA	lmo1481	-	DNA polymerase III subunit delta
1474	 34.10	-1	1515356..1517578	-	740	16803522	comEC	lmo1482	-	hypothetical protein
1475	 39.22	0	1517613..1518173	-	186	16803523	comEB	lmo1483	-	hypothetical protein
1476	 34.66	0	1518245..1518847	-	200	16803524	comEA	lmo1484	-	hypothetical protein
1477	 34.56	-1	1518950..1519681	-	243	16803525	-	lmo1485	-	hypothetical protein
1478	 37.82	0	1519736..1520092	-	118	16803526	-	lmo1486	-	hypothetical protein
1479	 38.72	0	1520097..1520672	-	191	16803527	-	lmo1487	-	hypothetical protein
1480	 38.45	0	1520659..1521225	-	188	16803528	-	lmo1488	-	hypothetical protein
1481	 34.02	-1	1521243..1521533	-	96	16803529	-	lmo1489	-	hypothetical protein
1482	 37.23	0	1521533..1522354	-	273	16803530	-	lmo1490	-	hypothetical protein
1483	 39.69	0	1522374..1523474	-	366	16803531	-	lmo1491	-	GTP-binding protein YqeH
1484	 36.97	0	1523471..1523992	-	173	16803532	-	lmo1492	-	hypothetical protein
1485	 38.64	0	1524154..1525962	+	602	16803533	-	lmo1493	-	hypothetical protein
1486	 37.89	0	1525997..1526698	-	233	16803534	-	lmo1494	-	hypothetical protein
1487	 38.46	0	1526748..1527371	-	207	16803535	-	lmo1495	-	hypothetical protein
1488	 37.06	0	1527422..1527904	-	160	16803536	-	lmo1496	-	hypothetical protein
1489	 35.40	0	1528098..1528727	-	209	16803537	udk	lmo1497	-	uridine kinase
1490	 37.61	0	1528724..1529377	-	217	16803538	-	lmo1498	-	hypothetical protein
1491	 32.96	-1	1529454..1530524	-	356	16803539	-	lmo1499	-	hypothetical protein
1492	 37.64	0	1530727..1531353	+	208	16803540	-	lmo1500	-	hypothetical protein
1493	 34.98	0	1531398..1531700	-	100	16803541	-	lmo1501	-	hypothetical protein
1494	 41.01	0	1531716..1532132	-	138	16803542	-	lmo1502	-	hypothetical protein
1495	 34.80	0	1532129..1532401	-	90	16803543	-	lmo1503	-	hypothetical protein
1496	 39.47	0	1532493..1535132	-	879	16803544	alaS	lmo1504	-	alanyl-tRNA synthetase
1497	 36.35	0	1535439..1536134	-	231	16803545	-	lmo1505	-	hypothetical protein
1498	 38.91	0	1536143..1537648	-	501	16803546	-	lmo1506	-	hypothetical protein
1499	 36.83	0	1537815..1538501	+	228	16803547	-	lmo1507	-	hypothetical protein
1500	 35.35	0	1538498..1539937	+	479	16803548	-	lmo1508	-	hypothetical protein
1501	 40.38	0	1539979..1542375	-	798	16803549	-	lmo1509	-	hypothetical protein
1502	 36.93	0	1542403..1543041	-	212	16803550	-	lmo1510	-	hypothetical protein
1503	 36.71	0	1543082..1543822	-	246	16803551	-	lmo1511	-	hypothetical protein
1504	 39.78	0	1543940..1545055	-	371	16803552	-	lmo1512	-	hypothetical protein
1505	 39.86	0	1545074..1546222	-	382	16803553	-	lmo1513	-	hypothetical protein
1506	 40.61	0	1546608..1547885	-	425	16803554	-	lmo1514	-	recombination factor protein RarA
1507	 39.48	0	1548034..1548456	+	140	16803555	-	lmo1515	-	hypothetical protein
1508	 40.38	0	1548701..1549906	+	401	16803556	-	lmo1516	-	hypothetical protein
1509	 39.07	0	1549920..1550285	+	121	16803557	-	lmo1517	-	hypothetical protein
1510	 37.53	0	1550435..1550815	+	126	16803558	-	lmo1518	-	hypothetical protein
1511	 39.19	0	1550854..1552629	-	591	16803559	aspS	lmo1519	-	aspartyl-tRNA synthetase
1512	 38.50	0	1552632..1553909	-	425	16803560	hisS	lmo1520	-	histidyl-tRNA synthetase
1513	 39.72	0	1554360..1555643	+	427	16803561	-	lmo1521	-	hypothetical protein
1514	 39.96	0	1555680..1556132	-	150	16803562	-	lmo1522	-	D-tyrosyl-tRNA deacylase
1515	 37.66	0	1556148..1558364	-	738	16803563	relA	lmo1523	-	hypothetical protein
1516	 38.12	0	1558570..1559091	-	173	16803564	apt	lmo1524	-	adenine phosphoribosyltransferase
1517	 39.33	0	1559081..1561432	-	783	16803565	-	lmo1525	-	hypothetical protein
1518	 33.04	-1	1561538..1561882	-	114	16803566	-	lmo1526	-	hypothetical protein
1519	 38.06	0	1561978..1564242	-	754	16803567	-	lmo1527	-	bifunctional preprotein translocase subunit SecD/SecF
1520	 35.05	0	1564343..1564633	-	96	16803568	-	lmo1528	-	hypothetical protein
1521	 32.73	-1	1564776..1565105	-	109	16803569	-	lmo1529	-	hypothetical protein
1522	 40.88	0	1565139..1566278	-	379	16803570	tgt	lmo1530	-	queuine tRNA-ribosyltransferase
1523	 39.94	0	1566365..1567393	-	342	16803571	-	lmo1531	-	hypothetical protein
1524	 40.97	0	1567397..1568404	-	335	16803572	ruvB	lmo1532	-	Holliday junction DNA helicase B
38.00	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.