IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1357	 40.16	0	1387381..1389210	+	609	16803405	tktB	lmo1365	-	1-deoxy-D-xylulose-5-phosphate synthase
1358	 39.03	0	1389207..1390031	+	274	16803406	-	lmo1366	-	hypothetical protein
1359	 35.11	0	1390222..1390671	+	149	16803407	-	lmo1367	-	arginine repressor
1360	 37.88	0	1390694..1392385	+	563	16803408	recN	lmo1368	-	DNA repair and genetic recombination
1361	 38.41	0	1392514..1393380	+	288	16803409	-	lmo1369	-	hypothetical protein
1362	 40.17	0	1393517..1394584	+	355	16803410	-	lmo1370	-	butyrate kinase
1363	 40.34	0	1394599..1396026	+	475	16803411	-	lmo1371	-	dihydrolipoamide dehydrogenase
1364	 41.77	+1	1396051..1397046	+	331	16803412	-	lmo1372	-	hypothetical protein
1365	 42.48	+1	1397063..1398046	+	327	16803413	-	lmo1373	-	hypothetical protein
1366	 39.65	0	1398077..1399327	+	416	16803414	-	lmo1374	-	hypothetical protein
1367	 36.98	0	1399699..1400796	+	365	16803415	-	lmo1375	-	hypothetical protein
1368	 40.45	0	1400941..1402359	+	472	16803416	-	lmo1376	-	6-phosphogluconate dehydrogenase
1369	 39.65	0	1402550..1403230	+	226	16803417	lisR	lmo1377	-	two-component response regulator
1370	 36.02	0	1403227..1404678	+	483	16803418	lisK	lmo1378	-	two-component sensor histidine kinase
1371	 35.75	0	1404714..1405541	-	275	16803419	-	lmo1379	-	OxaA-like protein precursor
1372	 35.46	0	1405578..1405859	-	93	16803420	-	lmo1380	-	hypothetical protein
1373	 36.88	0	1405945..1406226	-	93	16803421	-	lmo1381	-	hypothetical protein
1374	 38.22	0	1406366..1406713	+	115	16803422	-	lmo1382	-	hypothetical protein
1375	 39.18	0	1406742..1407818	+	358	16803423	-	lmo1383	-	isopentenyl pyrophosphate isomerase
1376	 38.85	0	1407859..1408818	-	319	16803424	-	lmo1384	-	hypothetical protein
1377	 38.19	0	1409070..1409996	+	308	16803425	-	lmo1385	-	hypothetical protein
1378	 38.57	0	1410148..1412421	+	757	16803426	-	lmo1386	-	hypothetical protein
1379	 37.26	0	1412455..1413294	-	279	16803427	-	lmo1387	-	pyrroline-5-carboxylate reductase
1380	 38.27	0	1413646..1414719	+	357	16803428	tcsA	lmo1388	-	CD4+ T cell-stimulating antigen, lipoprotein
1381	 38.72	0	1415152..1416693	+	513	16803429	-	lmo1389	-	hypothetical protein
1382	 39.32	0	1416686..1417738	+	350	16803430	-	lmo1390	-	hypothetical protein
1383	 41.85	+1	1417735..1418685	+	316	16803431	-	lmo1391	-	hypothetical protein
1384	 35.03	0	1418803..1420095	+	430	16803432	-	lmo1392	-	hypothetical protein
1385	 36.44	0	1420076..1421362	+	428	16803433	-	lmo1393	-	hypothetical protein
1386	 37.57	0	1421454..1422185	+	243	16803434	-	lmo1394	-	hypothetical protein
1387	 36.34	0	1422236..1423165	+	309	16803435	-	lmo1395	-	hypothetical protein
1388	 35.75	0	1423255..1423833	+	192	16803436	-	lmo1396	-	hypothetical protein
1389	 36.95	0	1423902..1425146	+	414	16803437	cinA	lmo1397	-	hypothetical protein
1390	 39.26	0	1425419..1426465	+	348	16803438	recA	lmo1398	-	recombinase A
1391	 41.39	+1	1426766..1428328	+	520	16803439	-	lmo1399	-	phosphodiesterase
1392	 38.55	0	1428442..1428939	+	165	16803440	-	lmo1400	-	hypothetical protein
1393	 40.55	0	1428945..1429748	+	267	16803441	-	lmo1401	-	hypothetical protein
1394	 37.47	0	1429765..1430127	+	120	16803442	-	lmo1402	-	hypothetical protein
1395	 39.02	0	1430237..1432819	+	860	16803443	mutS	lmo1403	-	DNA mismatch repair protein
1396	 38.32	0	1432839..1434644	+	601	16803444	mutL	lmo1404	-	DNA mismatch repair protein
1397	 37.89	0	1434661..1435209	+	182	16803445	-	lmo1405	-	hypothetical protein
1398	 39.07	0	1435635..1437866	+	743	16803446	pflB	lmo1406	-	pyruvate formate-lyase
1399	 37.88	0	1437943..1438689	+	248	16803447	pflC	lmo1407	-	pyruvate-formate lyase activating enzyme
1400	 32.20	-1	1438724..1439254	-	176	16803448	-	lmo1408	-	hypothetical protein
1401	 37.02	0	1439421..1440614	+	397	16803449	-	lmo1409	-	hypothetical protein
1402	 28.96	-2	1440748..1441296	+	182	16803450	-	lmo1410	-	hypothetical protein
1403	 35.09	0	1441313..1441540	+	75	16803451	-	lmo1411	-	hypothetical protein
1404	 30.34	-2	1441581..1442114	+	177	16803452	-	lmo1412	-	modulates DNA topology
1405	 35.00	0	1442368..1443687	-	439	16803453	-	lmo1413	-	peptidoglycan binding protein
1406	 39.91	0	1443873..1445042	-	389	16803454	-	lmo1414	-	hypothetical protein
1407	 37.62	0	1445192..1446358	+	388	16803455	-	lmo1415	-	hypothetical protein
1408	 35.67	0	1446383..1446982	-	199	16803456	-	lmo1416	-	hypothetical protein
1409	 36.14	0	1447052..1448296	-	414	16803457	-	lmo1417	-	hypothetical protein
1410	 37.90	0	1448315..1449583	-	422	16803458	-	lmo1418	-	hypothetical protein
1411	 32.18	-1	1449647..1450684	-	345	16803459	-	lmo1419	-	hypothetical protein
1412	 38.46	0	1450701..1451597	-	298	16803460	-	lmo1420	-	hypothetical protein
1413	 39.72	0	1451813..1452799	+	328	16803461	-	lmo1421	-	hypothetical protein
1414	 36.37	0	1452796..1454310	+	504	16803462	-	lmo1422	-	hypothetical protein
1415	 32.37	-1	1454347..1455177	-	276	16803463	-	lmo1423	-	hypothetical protein
1416	 38.01	0	1455316..1456662	-	448	16803464	-	lmo1424	-	manganese transport protein MntH
1417	 40.92	0	1456775..1457446	-	223	16803465	opuCD	lmo1425	-	hypothetical protein
1418	 36.89	0	1457461..1458387	-	308	16803466	opuCC	lmo1426	-	hypothetical protein
1419	 40.49	0	1458389..1459045	-	218	16803467	opuCB	lmo1427	-	hypothetical protein
1420	 37.94	0	1459049..1460242	-	397	16803468	opuCA	lmo1428	-	hypothetical protein
1421	 40.29	0	1460534..1461094	-	186	16803469	-	lmo1429	-	hypothetical protein
1422	 34.38	-1	1461343..1461726	-	127	16803470	-	lmo1430	-	hypothetical protein
1423	 37.08	0	1461866..1463467	+	533	16803471	-	lmo1431	-	hypothetical protein
1424	 34.41	-1	1463506..1464156	-	216	16803472	-	lmo1432	-	hypothetical protein
1425	 38.48	0	1464209..1465549	-	446	16803473	-	lmo1433	-	hypothetical protein
1426	 36.51	0	1465638..1467305	-	555	16803474	-	lmo1434	-	hypothetical protein
1427	 38.21	0	1467325..1468206	-	293	16803475	dapA	lmo1435	-	dihydrodipicolinate synthase
1428	 38.86	0	1468221..1469432	-	403	16803476	-	lmo1436	-	aspartate kinase I
1429	 38.89	0	1469444..1470487	-	347	16803477	-	lmo1437	-	hypothetical protein
1430	 38.09	0	1470685..1472850	-	721	16803478	-	lmo1438	-	hypothetical protein
1431	 40.39	0	1472980..1473588	-	202	16803479	sod	lmo1439	-	superoxide dismutase
1432	 34.96	0	1473889..1474689	+	266	16803480	-	lmo1440	-	hypothetical protein
1433	 39.11	0	1474802..1475908	+	368	16803481	ispG	lmo1441	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1434	 36.86	0	1475944..1476651	+	235	16803482	-	lmo1442	-	hypothetical protein
1435	 35.17	0	1476642..1476968	+	108	16803483	-	lmo1443	-	hypothetical protein
1436	 33.67	-1	1477050..1477934	-	294	16803484	-	lmo1444	-	hypothetical protein
1437	 34.98	0	1478071..1478496	-	141	16803485	zurR	lmo1445	-	transcriptional regulator ZurR (ferric uptake regulation)
1438	 34.02	-1	1478477..1479355	-	292	16803486	zurM	lmo1446	-	metal (zinc) transport protein (ABC transporter, permease protein)
1439	 38.37	0	1479330..1480103	-	257	16803487	zurA	lmo1447	-	metal (zinc) transport protein(ABC transporter, ATP-binding protein)
1440	 37.86	0	1480246..1481172	-	308	16803488	-	lmo1448	-	putative manganese-dependent inorganic pyrophosphatase
1441	 39.26	0	1481188..1482081	-	297	16803489	-	lmo1449	-	endonuclease IV
1442	 37.77	0	1482096..1483403	-	435	16803490	-	lmo1450	-	hypothetical protein
1443	 39.76	0	1483549..1484544	+	331	16803491	ispH	lmo1451	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1444	 36.01	0	1484590..1485711	-	373	16803492	-	lmo1452	-	hypothetical protein
1445	 37.30	0	1485708..1486412	-	234	16803493	-	lmo1453	-	hypothetical protein
1446	 40.18	0	1486480..1487604	-	374	16803494	rpoD	lmo1454	-	RNA polymerase sigma factor RpoD
1447	 37.43	0	1487699..1489579	-	626	16803495	dnaG	lmo1455	-	DNA primase
1448	 37.64	0	1489599..1490039	-	146	16803496	-	lmo1456	-	hypothetical protein
1449	 37.58	0	1490229..1491053	-	274	16803497	-	lmo1457	-	hypothetical protein
1450	 36.91	0	1491087..1493153	-	688	16803498	glyS	lmo1458	-	hypothetical protein
1451	 39.96	0	1493146..1494036	-	296	16803499	glyQ	lmo1459	-	glycyl-tRNA synthetase subunit alpha
1452	 36.72	0	1494317..1495084	-	255	16803500	recO	lmo1460	-	DNA repair protein RecO
1453	 34.13	-1	1495221..1495850	+	209	16803501	-	lmo1461	-	hypothetical protein
1454	 34.44	-1	1495899..1496804	-	301	16803502	era	lmo1462	-	GTP-binding protein Era
1455	 40.66	0	1496801..1497196	-	131	16803503	-	lmo1463	-	hypothetical protein
1456	 34.09	-1	1497221..1497616	-	131	16803504	-	lmo1464	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.