IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.00   STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
88	 42.39	+1	97127..97369	+	80	16802136	-	lmo0088	-	hypothetical protein
89	 34.98	0	97381..98412	+	343	16802137	-	lmo0089	-	hypothetical protein
90	 39.14	0	98409..99905	+	498	16802138	-	lmo0090	-	F0F1 ATP synthase subunit alpha
91	 38.16	0	99902..100771	+	289	16802139	-	lmo0091	-	hypothetical protein
92	 39.97	0	100772..102142	+	456	16802140	-	lmo0092	-	F0F1 ATP synthase subunit beta
93	 38.58	0	102155..102478	+	107	16802141	-	lmo0093	-	hypothetical protein
94	 34.94	0	102468..103028	+	186	16802142	-	lmo0094	-	hypothetical protein
95	 34.91	0	103204..103836	+	210	16802143	-	lmo0095	-	hypothetical protein
96	 40.37	0	104134..105099	+	321	16802144	-	lmo0096	-	hypothetical protein
97	 43.00	+1	105123..105929	+	268	16802145	-	lmo0097	-	hypothetical protein
98	 40.57	0	105951..106862	+	303	16802146	-	lmo0098	-	hypothetical protein
99	 38.46	0	106988..107377	+	129	16802147	-	lmo0099	-	hypothetical protein
100	 35.61	0	107499..107849	+	116	16802148	-	lmo0100	-	hypothetical protein
101	 33.67	-1	107915..108208	-	97	16802149	-	lmo0101	-	hypothetical protein
102	 39.86	0	108320..108610	+	96	16802150	-	lmo0102	-	hypothetical protein
103	 39.97	0	108624..109256	+	210	16802151	-	lmo0103	-	hypothetical protein
104	 34.95	0	109349..109720	+	123	16802152	-	lmo0104	-	hypothetical protein
105	 41.17	0	110013..112283	+	756	16802153	-	lmo0105	-	hypothetical protein
106	 39.53	0	112386..113288	+	300	16802154	-	lmo0106	-	hypothetical protein
107	 40.57	0	113313..115094	-	593	16802155	-	lmo0107	-	hypothetical protein
108	 39.93	0	115087..116829	-	580	16802156	-	lmo0108	-	hypothetical protein
109	 37.77	0	116972..117805	+	277	16802157	-	lmo0109	-	hypothetical protein
110	 42.11	+1	117841..118956	+	371	16802158	-	lmo0110	-	hypothetical protein
111	 37.01	0	119063..119770	+	235	16802159	-	lmo0111	-	hypothetical protein
112	 36.64	0	119740..120435	-	231	16802160	-	lmo0112	-	hypothetical protein
113	 33.11	-1	120654..121106	-	150	16802161	-	lmo0113	-	hypothetical protein
114	 36.01	0	121112..121447	-	111	16802162	-	lmo0114	-	hypothetical protein
115	 34.73	0	121664..122092	+	142	16802163	lmaD	lmo0115	-	hypothetical protein
116	 36.93	0	122104..122520	+	138	16802164	lmaC	lmo0116	-	hypothetical protein
117	 36.92	0	122798..123187	+	129	16802165	lmaB	lmo0117	-	antigen B
118	 42.11	+1	123200..123712	+	170	16802166	lmaA	lmo0118	-	antigen A
119	 32.67	-1	123760..124062	+	100	16802167	-	lmo0119	-	hypothetical protein
120	 36.05	0	124104..124508	+	134	16802168	-	lmo0120	-	hypothetical protein
121	 40.29	0	124495..126363	+	622	16802169	-	lmo0121	-	hypothetical protein
122	 38.46	0	126360..127178	+	272	16802170	-	lmo0122	-	hypothetical protein
123	 35.27	0	127188..128324	+	378	16802171	-	lmo0123	-	hypothetical protein
124	 37.33	0	128314..128613	+	99	16802172	-	lmo0124	-	hypothetical protein
125	 37.50	0	128628..129203	+	191	16802173	-	lmo0125	-	hypothetical protein
126	 41.25	0	129218..129697	+	159	16802174	-	lmo0126	-	hypothetical protein
127	 37.62	0	129694..130230	+	178	16802175	-	lmo0127	-	hypothetical protein
128	 38.06	0	130249..130671	+	140	16802176	-	lmo0128	-	hypothetical protein
129	 34.71	0	130652..131380	+	242	16802177	-	lmo0129	-	hypothetical protein
130	 42.38	+1	131419..133773	-	784	16802178	-	lmo0130	-	hypothetical protein
131	 35.87	0	133961..134710	+	249	16802179	-	lmo0131	-	hypothetical protein
132	 42.94	+1	134782..136290	-	502	16802180	-	lmo0132	-	inositol-5-monophosphate dehydrogenase
133	 43.16	+1	136469..136702	+	77	16802181	-	lmo0133	-	hypothetical protein
134	 39.43	0	136714..136992	+	92	16802182	-	lmo0134	-	hypothetical protein
135	 38.92	0	137323..138897	+	524	16802183	-	lmo0135	-	hypothetical protein
136	 40.17	0	138999..139949	+	316	16802184	-	lmo0136	-	hypothetical protein
137	 45.19	+2	139960..140853	+	297	16802185	-	lmo0137	-	hypothetical protein
138	 40.70	0	141052..141336	+	94	16802186	-	lmo0138	-	hypothetical protein
139	 42.55	+1	141337..141705	+	122	16802187	-	lmo0139	-	hypothetical protein
140	 39.67	0	141618..143006	+	462	16802188	-	lmo0140	-	hypothetical protein
141	 25.10	-2	143016..143258	+	80	16802189	-	lmo0141	-	hypothetical protein
142	 28.29	-2	143366..143722	+	118	16802190	-	lmo0142	-	hypothetical protein
143	 26.55	-2	144097..144273	+	58	16802191	-	lmo0143	-	hypothetical protein
144	 26.13	-2	144397..144840	+	147	16802192	-	lmo0144	-	hypothetical protein
145	 41.38	+1	145085..145171	+	28	16802193	-	lmo0145	-	hypothetical protein
146	 29.47	-2	145354..145560	+	68	16802194	-	lmo0146	-	hypothetical protein
147	 26.94	-2	145869..146306	+	145	16802195	-	lmo0147	-	hypothetical protein
148	 28.77	-2	146306..146656	+	116	16802196	-	lmo0148	-	hypothetical protein
149	 38.35	0	146764..147381	+	205	16802197	-	lmo0149	-	hypothetical protein
150	 27.60	-2	147399..147764	+	121	16802198	-	lmo0150	-	hypothetical protein
151	 30.15	-2	147884..148291	+	135	16802199	-	lmo0151	-	hypothetical protein
152	 41.12	0	148354..150009	-	551	16802200	-	lmo0152	-	hypothetical protein
153	 39.38	0	150232..151173	+	313	16802201	-	lmo0153	-	hypothetical protein
154	 39.01	0	151186..151890	+	234	16802202	-	lmo0154	-	hypothetical protein
155	 41.39	+1	151839..152645	+	268	16802203	-	lmo0155	-	hypothetical protein
156	 29.81	-2	152648..153328	-	226	16802204	-	lmo0156	-	hypothetical protein
157	 39.70	0	153608..155947	+	779	16802205	-	lmo0157	-	hypothetical protein
158	 37.02	0	155993..156805	+	270	16802206	-	lmo0158	-	hypothetical protein
159	 40.60	0	157089..159470	+	793	16802207	-	lmo0159	-	peptidoglycan binding protein
160	 38.11	0	159663..161378	+	571	16802208	-	lmo0160	-	peptidoglycan binding protein
161	 36.82	0	161420..162250	-	276	16802209	-	lmo0161	-	hypothetical protein
162	 42.40	+1	162467..163459	+	330	16802210	-	lmo0162	-	DNA polymerase III subunit delta'
163	 42.09	+1	163465..164298	+	277	16802211	-	lmo0163	-	hypothetical protein
164	 40.00	0	164309..164698	+	129	16802212	-	lmo0164	-	DNA replication intiation control protein YabA
165	 37.72	0	164756..165508	+	250	16802213	-	lmo0165	-	hypothetical protein
166	 37.36	0	165492..165764	+	90	16802214	-	lmo0166	-	GIY-YIG nuclease superfamily protein
167	 41.38	+1	165761..166642	+	293	16802215	-	lmo0167	-	hypothetical protein
168	 36.84	0	166687..166971	-	94	16802216	-	lmo0168	-	hypothetical protein
169	 37.53	0	167086..167943	+	285	16802217	-	lmo0169	-	hypothetical protein
170	 36.57	0	168005..169270	+	421	16802218	-	lmo0170	-	hypothetical protein
171	 36.41	0	169510..172008	+	832	16802219	-	lmo0171	-	hypothetical protein
172	 34.31	-1	172903..173208	-	101	16802220	-	lmo0174	-	hypothetical protein
173	 36.38	0	173309..174556	-	415	16802221	-	lmo0175	-	peptidoglycan binding protein
174	 38.33	0	174834..175694	+	286	16802222	-	lmo0176	-	hypothetical protein
175	 38.40	0	175766..177760	+	664	16802223	metS	lmo0177	-	methionyl-tRNA synthetase
176	 36.71	0	177924..179138	+	404	16802224	-	lmo0178	-	hypothetical protein
177	 37.54	0	179174..180052	+	292	16802225	-	lmo0179	-	hypothetical protein
178	 36.98	0	180052..180900	+	282	16802226	-	lmo0180	-	hypothetical protein
179	 37.07	0	180928..182184	+	418	16802227	-	lmo0181	-	hypothetical protein
180	 39.75	0	182267..185569	+	1100	16802228	-	lmo0182	-	hypothetical protein
181	 40.27	0	185572..187863	+	763	16802229	-	lmo0183	-	hypothetical protein
182	 38.87	0	187867..189528	+	553	16802230	-	lmo0184	-	hypothetical protein
183	 40.18	0	189625..190398	+	257	16802231	-	lmo0185	-	hypothetical protein
184	 36.02	0	190690..191916	+	408	16802232	-	lmo0186	-	hypothetical protein
185	 40.97	0	192018..192593	+	191	16802233	-	lmo0187	-	hypothetical protein
186	 38.51	0	192586..193473	+	295	16802234	ksgA	lmo0188	-	dimethyladenosine transferase
187	 34.88	0	193593..193850	+	85	16802235	-	lmo0189	-	hypothetical protein
38.00	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.