IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.00   STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1303	 31.59	-1	1337742..1338947	-	401	16803351	-	lmo1311	-	hypothetical protein
1304	 28.80	-2	1338925..1339299	-	124	16803352	-	lmo1312	-	hypothetical protein
1305	 40.19	0	1339592..1340320	+	242	16803353	smbA	lmo1313	-	hypothetical protein
1306	 35.84	0	1340320..1340877	+	185	16803354	frr	lmo1314	-	hypothetical protein
1307	 38.87	0	1341107..1341865	+	252	16803355	-	lmo1315	-	hypothetical protein
1308	 34.22	-1	1341879..1342667	+	262	16803356	cdsA	lmo1316	-	hypothetical protein
1309	 39.46	0	1342682..1343824	+	380	16803357	-	lmo1317	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1310	 38.56	0	1343838..1345100	+	420	16803358	-	lmo1318	-	hypothetical protein
1311	 39.13	0	1345140..1346846	+	568	16803359	proS	lmo1319	-	prolyl-tRNA synthetase
1312	 38.73	0	1346951..1351285	+	1444	16803360	polC	lmo1320	-	DNA polymerase III PolC
1313	 39.53	0	1351467..1351934	+	155	16803361	-	lmo1321	-	hypothetical protein
1314	 40.30	0	1351964..1353082	+	372	16803362	nusA	lmo1322	-	transcription elongation factor NusA
1315	 40.00	0	1353097..1353381	+	94	16803363	-	lmo1323	-	hypothetical protein
1316	 38.67	0	1353374..1353673	+	99	16803364	-	lmo1324	-	hypothetical protein
1317	 39.70	0	1353696..1356035	+	779	16803365	infB	lmo1325	-	translation initiation factor IF-2
1318	 40.14	0	1356032..1356310	+	92	16803366	-	lmo1326	-	hypothetical protein
1319	 39.42	0	1356327..1356671	+	114	16803367	rbfA	lmo1327	-	ribosome-binding factor A
1320	 38.91	0	1356769..1357683	+	304	16803368	truB	lmo1328	-	hypothetical protein
1321	 38.94	0	1357753..1358697	+	314	16803369	ribC	lmo1329	-	hypothetical protein
1322	 37.78	0	1358834..1359103	+	89	16803370	rpsO	lmo1330	-	30S ribosomal protein S15
1323	 39.55	0	1359352..1361523	+	723	16803371	pnpA	lmo1331	-	polynucleotide phosphorylase/polyadenylase
1324	 38.42	0	1361564..1362604	-	346	16803372	-	lmo1332	-	hypothetical protein
1325	 33.33	-1	1362765..1363244	-	159	16803373	-	lmo1333	-	hypothetical protein
1326	 33.05	-1	1363272..1363628	-	118	16803374	-	lmo1334	-	hypothetical protein
1327	 34.67	0	1363826..1363975	+	49	16803375	rpmG	lmo1335	-	50S ribosomal protein L33
1328	 33.89	-1	1364031..1364570	+	179	16803376	-	lmo1336	-	hypothetical protein
1329	 36.39	0	1364669..1366207	+	512	16803377	-	lmo1337	-	hypothetical protein
1330	 26.29	-2	1366220..1366432	+	70	16803378	-	lmo1338	-	hypothetical protein
1331	 38.18	0	1366457..1367425	+	322	16803379	-	lmo1339	-	hypothetical protein
1332	 31.59	-1	1367559..1368650	+	363	16803380	-	lmo1340	-	hypothetical protein
1333	 31.13	-2	1368668..1368985	-	105	16803381	-	lmo1341	-	hypothetical protein
1334	 32.69	-1	1368982..1369449	-	155	16803382	-	lmo1342	-	hypothetical protein
1335	 33.33	-1	1369412..1369696	-	94	16803383	-	lmo1343	-	hypothetical protein
1336	 30.54	-2	1369683..1370111	-	142	16803384	-	lmo1344	-	hypothetical protein
1337	 34.26	-1	1370108..1370431	-	107	16803385	-	lmo1345	-	hypothetical protein
1338	 32.07	-1	1370445..1371476	-	343	16803386	comGB	lmo1346	-	hypothetical protein
1339	 37.54	0	1371454..1372476	-	340	16803387	comGA	lmo1347	-	hypothetical protein
1340	 38.02	0	1373015..1374103	+	362	16803388	-	lmo1348	-	glycine cleavage system aminomethyltransferase T
1341	 38.38	0	1374119..1375465	+	448	16803389	-	lmo1349	-	glycine dehydrogenase subunit 1
1342	 38.85	0	1375462..1376928	+	488	16803390	-	lmo1350	-	glycine dehydrogenase subunit 2
1343	 35.43	0	1376968..1377348	-	126	16803391	-	lmo1351	-	hypothetical protein
1344	 34.80	0	1377410..1377682	-	90	16803392	-	lmo1352	-	hypothetical protein
1345	 37.47	0	1377695..1378660	-	321	16803393	-	lmo1353	-	hypothetical protein
1346	 35.78	0	1378840..1379901	+	353	16803394	-	lmo1354	-	hypothetical protein
1347	 37.46	0	1380004..1380561	+	185	16803395	efp	lmo1355	-	elongation factor P
1348	 38.68	0	1380720..1381187	+	155	16803396	-	lmo1356	-	hypothetical protein
1349	 39.71	0	1381201..1382565	+	454	16803397	-	lmo1357	-	acetyl-CoA carboxylase biotin carboxylase subunit
1350	 37.99	0	1382569..1382976	+	135	16803398	-	lmo1358	-	hypothetical protein
1351	 34.63	-1	1383007..1383393	+	128	16803399	nusB	lmo1359	-	transcription antitermination protein NusB
1352	 37.08	0	1383489..1384343	+	284	16803400	folD	lmo1360	-	hypothetical protein
1353	 39.32	0	1384362..1385714	+	450	16803401	xseA	lmo1361	-	exodeoxyribonuclease VII large subunit
1354	 36.84	0	1385704..1385931	+	75	16803402	-	lmo1362	-	hypothetical protein
1355	 38.21	0	1385934..1386815	+	293	16803403	-	lmo1363	-	hypothetical protein
1356	 43.28	+1	1387014..1387214	+	66	16803404	cspL	lmo1364	-	hypothetical protein
1357	 40.16	0	1387381..1389210	+	609	16803405	tktB	lmo1365	-	1-deoxy-D-xylulose-5-phosphate synthase
1358	 39.03	0	1389207..1390031	+	274	16803406	-	lmo1366	-	hypothetical protein
1359	 35.11	0	1390222..1390671	+	149	16803407	-	lmo1367	-	arginine repressor
1360	 37.88	0	1390694..1392385	+	563	16803408	recN	lmo1368	-	DNA repair and genetic recombination
1361	 38.41	0	1392514..1393380	+	288	16803409	-	lmo1369	-	hypothetical protein
1362	 40.17	0	1393517..1394584	+	355	16803410	-	lmo1370	-	butyrate kinase
1363	 40.34	0	1394599..1396026	+	475	16803411	-	lmo1371	-	dihydrolipoamide dehydrogenase
1364	 41.77	+1	1396051..1397046	+	331	16803412	-	lmo1372	-	hypothetical protein
1365	 42.48	+1	1397063..1398046	+	327	16803413	-	lmo1373	-	hypothetical protein
1366	 39.65	0	1398077..1399327	+	416	16803414	-	lmo1374	-	hypothetical protein
1367	 36.98	0	1399699..1400796	+	365	16803415	-	lmo1375	-	hypothetical protein
1368	 40.45	0	1400941..1402359	+	472	16803416	-	lmo1376	-	6-phosphogluconate dehydrogenase
1369	 39.65	0	1402550..1403230	+	226	16803417	lisR	lmo1377	-	two-component response regulator
1370	 36.02	0	1403227..1404678	+	483	16803418	lisK	lmo1378	-	two-component sensor histidine kinase
1371	 35.75	0	1404714..1405541	-	275	16803419	-	lmo1379	-	OxaA-like protein precursor
1372	 35.46	0	1405578..1405859	-	93	16803420	-	lmo1380	-	hypothetical protein
1373	 36.88	0	1405945..1406226	-	93	16803421	-	lmo1381	-	hypothetical protein
1374	 38.22	0	1406366..1406713	+	115	16803422	-	lmo1382	-	hypothetical protein
1375	 39.18	0	1406742..1407818	+	358	16803423	-	lmo1383	-	isopentenyl pyrophosphate isomerase
1376	 38.85	0	1407859..1408818	-	319	16803424	-	lmo1384	-	hypothetical protein
1377	 38.19	0	1409070..1409996	+	308	16803425	-	lmo1385	-	hypothetical protein
1378	 38.57	0	1410148..1412421	+	757	16803426	-	lmo1386	-	hypothetical protein
1379	 37.26	0	1412455..1413294	-	279	16803427	-	lmo1387	-	pyrroline-5-carboxylate reductase
1380	 38.27	0	1413646..1414719	+	357	16803428	tcsA	lmo1388	-	CD4+ T cell-stimulating antigen, lipoprotein
1381	 38.72	0	1415152..1416693	+	513	16803429	-	lmo1389	-	hypothetical protein
1382	 39.32	0	1416686..1417738	+	350	16803430	-	lmo1390	-	hypothetical protein
1383	 41.85	+1	1417735..1418685	+	316	16803431	-	lmo1391	-	hypothetical protein
1384	 35.03	0	1418803..1420095	+	430	16803432	-	lmo1392	-	hypothetical protein
1385	 36.44	0	1420076..1421362	+	428	16803433	-	lmo1393	-	hypothetical protein
1386	 37.57	0	1421454..1422185	+	243	16803434	-	lmo1394	-	hypothetical protein
1387	 36.34	0	1422236..1423165	+	309	16803435	-	lmo1395	-	hypothetical protein
1388	 35.75	0	1423255..1423833	+	192	16803436	-	lmo1396	-	hypothetical protein
1389	 36.95	0	1423902..1425146	+	414	16803437	cinA	lmo1397	-	hypothetical protein
1390	 39.26	0	1425419..1426465	+	348	16803438	recA	lmo1398	-	recombinase A
1391	 41.39	+1	1426766..1428328	+	520	16803439	-	lmo1399	-	phosphodiesterase
1392	 38.55	0	1428442..1428939	+	165	16803440	-	lmo1400	-	hypothetical protein
1393	 40.55	0	1428945..1429748	+	267	16803441	-	lmo1401	-	hypothetical protein
1394	 37.47	0	1429765..1430127	+	120	16803442	-	lmo1402	-	hypothetical protein
1395	 39.02	0	1430237..1432819	+	860	16803443	mutS	lmo1403	-	DNA mismatch repair protein
1396	 38.32	0	1432839..1434644	+	601	16803444	mutL	lmo1404	-	DNA mismatch repair protein
1397	 37.89	0	1434661..1435209	+	182	16803445	-	lmo1405	-	hypothetical protein
1398	 39.07	0	1435635..1437866	+	743	16803446	pflB	lmo1406	-	pyruvate formate-lyase
1399	 37.88	0	1437943..1438689	+	248	16803447	pflC	lmo1407	-	pyruvate-formate lyase activating enzyme
1400	 32.20	-1	1438724..1439254	-	176	16803448	-	lmo1408	-	hypothetical protein
1401	 37.02	0	1439421..1440614	+	397	16803449	-	lmo1409	-	hypothetical protein
1402	 28.96	-2	1440748..1441296	+	182	16803450	-	lmo1410	-	hypothetical protein
38.00	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.