IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.00   STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1276	 39.53	0	1307009..1307605	-	198	16803324	-	lmo1284	-	hypothetical protein
1277	 37.99	0	1307763..1308170	+	135	16803325	-	lmo1285	-	hypothetical protein
1278	 42.43	+1	1308351..1310318	+	655	16803326	parE	lmo1286	-	DNA topoisomerase IV subunit B
1279	 38.05	0	1310315..1312774	+	819	16803327	parC	lmo1287	-	DNA topoisomerase IV subunit A
1280	 38.46	0	1312857..1313324	+	155	16803328	-	lmo1288	-	S-ribosylhomocysteinase
1281	 33.22	-1	1313654..1315435	+	593	16803329	-	lmo1289	-	hypothetical protein
1282	 35.56	0	1315767..1317563	+	598	16803330	-	lmo1290	-	hypothetical protein
1283	 36.70	0	1317596..1319464	-	622	16803331	-	lmo1291	-	hypothetical protein
1284	 37.91	0	1319677..1320375	+	232	16803332	-	lmo1292	-	hypothetical protein
1285	 37.98	0	1320608..1322284	+	558	16803333	glpD	lmo1293	-	hypothetical protein
1286	 38.13	0	1322410..1323327	+	305	16803334	miaA	lmo1294	-	hypothetical protein
1287	 36.32	0	1323450..1323683	+	77	16803335	-	lmo1295	-	hypothetical protein
1288	 37.25	0	1323794..1325017	+	407	16803336	-	lmo1296	-	hypothetical protein
1289	 39.28	0	1325010..1326236	+	408	16803337	-	lmo1297	-	hypothetical protein
1290	 38.75	0	1326440..1326808	+	122	16803338	glnR	lmo1298	-	hypothetical protein
1291	 38.50	0	1326879..1328213	+	444	16803339	glnA	lmo1299	-	hypothetical protein
1292	 37.04	0	1328357..1329652	+	431	16803340	-	lmo1300	-	hypothetical protein
1293	 37.36	0	1329696..1330217	-	173	16803341	-	lmo1301	-	hypothetical protein
1294	 37.56	0	1330247..1330861	-	204	16803342	-	lmo1302	-	LexA repressor
1295	 37.58	0	1331018..1331347	+	109	16803343	-	lmo1303	-	hypothetical protein
1296	 32.89	-1	1331439..1331666	+	75	16803344	-	lmo1304	-	hypothetical protein
1297	 39.55	0	1331813..1333807	+	664	16803345	tkt	lmo1305	-	hypothetical protein
1298	 34.58	-1	1334028..1334267	+	79	16803346	-	lmo1306	-	hypothetical protein
1299	 28.94	-2	1334318..1335160	-	280	16803347	-	lmo1307	-	hypothetical protein
1300	 39.62	0	1335179..1335910	-	243	16803348	-	lmo1308	-	hypothetical protein
1301	 37.67	0	1335932..1336438	-	168	16803349	-	lmo1309	-	hypothetical protein
1302	 35.40	0	1336448..1337752	-	434	16803350	-	lmo1310	-	hypothetical protein
1303	 31.59	-1	1337742..1338947	-	401	16803351	-	lmo1311	-	hypothetical protein
1304	 28.80	-2	1338925..1339299	-	124	16803352	-	lmo1312	-	hypothetical protein
1305	 40.19	0	1339592..1340320	+	242	16803353	smbA	lmo1313	-	hypothetical protein
1306	 35.84	0	1340320..1340877	+	185	16803354	frr	lmo1314	-	hypothetical protein
1307	 38.87	0	1341107..1341865	+	252	16803355	-	lmo1315	-	hypothetical protein
1308	 34.22	-1	1341879..1342667	+	262	16803356	cdsA	lmo1316	-	hypothetical protein
1309	 39.46	0	1342682..1343824	+	380	16803357	-	lmo1317	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1310	 38.56	0	1343838..1345100	+	420	16803358	-	lmo1318	-	hypothetical protein
1311	 39.13	0	1345140..1346846	+	568	16803359	proS	lmo1319	-	prolyl-tRNA synthetase
1312	 38.73	0	1346951..1351285	+	1444	16803360	polC	lmo1320	-	DNA polymerase III PolC
1313	 39.53	0	1351467..1351934	+	155	16803361	-	lmo1321	-	hypothetical protein
1314	 40.30	0	1351964..1353082	+	372	16803362	nusA	lmo1322	-	transcription elongation factor NusA
1315	 40.00	0	1353097..1353381	+	94	16803363	-	lmo1323	-	hypothetical protein
1316	 38.67	0	1353374..1353673	+	99	16803364	-	lmo1324	-	hypothetical protein
1317	 39.70	0	1353696..1356035	+	779	16803365	infB	lmo1325	-	translation initiation factor IF-2
1318	 40.14	0	1356032..1356310	+	92	16803366	-	lmo1326	-	hypothetical protein
1319	 39.42	0	1356327..1356671	+	114	16803367	rbfA	lmo1327	-	ribosome-binding factor A
1320	 38.91	0	1356769..1357683	+	304	16803368	truB	lmo1328	-	hypothetical protein
1321	 38.94	0	1357753..1358697	+	314	16803369	ribC	lmo1329	-	hypothetical protein
1322	 37.78	0	1358834..1359103	+	89	16803370	rpsO	lmo1330	-	30S ribosomal protein S15
1323	 39.55	0	1359352..1361523	+	723	16803371	pnpA	lmo1331	-	polynucleotide phosphorylase/polyadenylase
1324	 38.42	0	1361564..1362604	-	346	16803372	-	lmo1332	-	hypothetical protein
1325	 33.33	-1	1362765..1363244	-	159	16803373	-	lmo1333	-	hypothetical protein
1326	 33.05	-1	1363272..1363628	-	118	16803374	-	lmo1334	-	hypothetical protein
1327	 34.67	0	1363826..1363975	+	49	16803375	rpmG	lmo1335	-	50S ribosomal protein L33
1328	 33.89	-1	1364031..1364570	+	179	16803376	-	lmo1336	-	hypothetical protein
1329	 36.39	0	1364669..1366207	+	512	16803377	-	lmo1337	-	hypothetical protein
1330	 26.29	-2	1366220..1366432	+	70	16803378	-	lmo1338	-	hypothetical protein
1331	 38.18	0	1366457..1367425	+	322	16803379	-	lmo1339	-	hypothetical protein
1332	 31.59	-1	1367559..1368650	+	363	16803380	-	lmo1340	-	hypothetical protein
1333	 31.13	-2	1368668..1368985	-	105	16803381	-	lmo1341	-	hypothetical protein
1334	 32.69	-1	1368982..1369449	-	155	16803382	-	lmo1342	-	hypothetical protein
1335	 33.33	-1	1369412..1369696	-	94	16803383	-	lmo1343	-	hypothetical protein
1336	 30.54	-2	1369683..1370111	-	142	16803384	-	lmo1344	-	hypothetical protein
1337	 34.26	-1	1370108..1370431	-	107	16803385	-	lmo1345	-	hypothetical protein
1338	 32.07	-1	1370445..1371476	-	343	16803386	comGB	lmo1346	-	hypothetical protein
1339	 37.54	0	1371454..1372476	-	340	16803387	comGA	lmo1347	-	hypothetical protein
1340	 38.02	0	1373015..1374103	+	362	16803388	-	lmo1348	-	glycine cleavage system aminomethyltransferase T
1341	 38.38	0	1374119..1375465	+	448	16803389	-	lmo1349	-	glycine dehydrogenase subunit 1
1342	 38.85	0	1375462..1376928	+	488	16803390	-	lmo1350	-	glycine dehydrogenase subunit 2
1343	 35.43	0	1376968..1377348	-	126	16803391	-	lmo1351	-	hypothetical protein
1344	 34.80	0	1377410..1377682	-	90	16803392	-	lmo1352	-	hypothetical protein
1345	 37.47	0	1377695..1378660	-	321	16803393	-	lmo1353	-	hypothetical protein
1346	 35.78	0	1378840..1379901	+	353	16803394	-	lmo1354	-	hypothetical protein
1347	 37.46	0	1380004..1380561	+	185	16803395	efp	lmo1355	-	elongation factor P
1348	 38.68	0	1380720..1381187	+	155	16803396	-	lmo1356	-	hypothetical protein
1349	 39.71	0	1381201..1382565	+	454	16803397	-	lmo1357	-	acetyl-CoA carboxylase biotin carboxylase subunit
1350	 37.99	0	1382569..1382976	+	135	16803398	-	lmo1358	-	hypothetical protein
1351	 34.63	-1	1383007..1383393	+	128	16803399	nusB	lmo1359	-	transcription antitermination protein NusB
1352	 37.08	0	1383489..1384343	+	284	16803400	folD	lmo1360	-	hypothetical protein
1353	 39.32	0	1384362..1385714	+	450	16803401	xseA	lmo1361	-	exodeoxyribonuclease VII large subunit
1354	 36.84	0	1385704..1385931	+	75	16803402	-	lmo1362	-	hypothetical protein
1355	 38.21	0	1385934..1386815	+	293	16803403	-	lmo1363	-	hypothetical protein
1356	 43.28	+1	1387014..1387214	+	66	16803404	cspL	lmo1364	-	hypothetical protein
1357	 40.16	0	1387381..1389210	+	609	16803405	tktB	lmo1365	-	1-deoxy-D-xylulose-5-phosphate synthase
1358	 39.03	0	1389207..1390031	+	274	16803406	-	lmo1366	-	hypothetical protein
1359	 35.11	0	1390222..1390671	+	149	16803407	-	lmo1367	-	arginine repressor
1360	 37.88	0	1390694..1392385	+	563	16803408	recN	lmo1368	-	DNA repair and genetic recombination
1361	 38.41	0	1392514..1393380	+	288	16803409	-	lmo1369	-	hypothetical protein
1362	 40.17	0	1393517..1394584	+	355	16803410	-	lmo1370	-	butyrate kinase
1363	 40.34	0	1394599..1396026	+	475	16803411	-	lmo1371	-	dihydrolipoamide dehydrogenase
1364	 41.77	+1	1396051..1397046	+	331	16803412	-	lmo1372	-	hypothetical protein
1365	 42.48	+1	1397063..1398046	+	327	16803413	-	lmo1373	-	hypothetical protein
1366	 39.65	0	1398077..1399327	+	416	16803414	-	lmo1374	-	hypothetical protein
1367	 36.98	0	1399699..1400796	+	365	16803415	-	lmo1375	-	hypothetical protein
1368	 40.45	0	1400941..1402359	+	472	16803416	-	lmo1376	-	6-phosphogluconate dehydrogenase
1369	 39.65	0	1402550..1403230	+	226	16803417	lisR	lmo1377	-	two-component response regulator
1370	 36.02	0	1403227..1404678	+	483	16803418	lisK	lmo1378	-	two-component sensor histidine kinase
1371	 35.75	0	1404714..1405541	-	275	16803419	-	lmo1379	-	OxaA-like protein precursor
1372	 35.46	0	1405578..1405859	-	93	16803420	-	lmo1380	-	hypothetical protein
1373	 36.88	0	1405945..1406226	-	93	16803421	-	lmo1381	-	hypothetical protein
1374	 38.22	0	1406366..1406713	+	115	16803422	-	lmo1382	-	hypothetical protein
1375	 39.18	0	1406742..1407818	+	358	16803423	-	lmo1383	-	isopentenyl pyrophosphate isomerase
38.00	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.