IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1133	 40.83	0	1173643..1174122	+	159	16803181	-	lmo1141	-	hypothetical protein
1134	 40.44	0	1174241..1175605	+	454	16803182	-	lmo1142	-	hypothetical protein
1135	 40.90	0	1175602..1176156	+	184	16803183	-	lmo1143	-	hypothetical protein
1136	 36.47	0	1176304..1176654	+	116	16803184	-	lmo1144	-	hypothetical protein
1137	 39.12	0	1176660..1177091	+	143	16803185	-	lmo1145	-	hypothetical protein
1138	 43.07	+1	1177116..1177865	+	249	16803186	-	lmo1146	-	hypothetical protein
1139	 42.65	+1	1177862..1178419	+	185	16803187	-	lmo1147	-	hypothetical protein
1140	 41.63	+1	1178421..1179167	+	248	16803188	-	lmo1148	-	hypothetical protein
1141	 38.72	0	1179168..1179743	+	191	16803189	-	lmo1149	-	hypothetical protein
1142	 38.19	0	1180152..1181036	-	294	16803190	-	lmo1150	-	transcriptional regulator PocR
1143	 47.22	+2	1181338..1181625	+	95	16803191	-	lmo1151	-	hypothetical protein
1144	 42.17	+1	1181720..1182421	+	233	16803192	-	lmo1152	-	hypothetical protein
1145	 41.14	0	1182440..1184104	+	554	16803193	-	lmo1153	-	hypothetical protein
1146	 39.70	0	1184142..1184801	+	219	16803194	-	lmo1154	-	hypothetical protein
1147	 38.60	0	1184818..1185330	+	170	16803195	-	lmo1155	-	hypothetical protein
1148	 42.83	+1	1185375..1187195	+	606	16803196	-	lmo1156	-	hypothetical protein
1149	 39.08	0	1187192..1187539	+	115	16803197	-	lmo1157	-	hypothetical protein
1150	 42.69	+1	1187552..1187989	+	145	16803198	-	lmo1158	-	hypothetical protein
1151	 43.84	+1	1188014..1188289	+	91	16803199	-	lmo1159	-	hypothetical protein
1152	 39.78	0	1188293..1188928	+	211	16803200	-	lmo1160	-	hypothetical protein
1153	 43.93	+1	1188949..1189788	+	279	16803201	-	lmo1161	-	hypothetical protein
1154	 39.58	0	1189785..1190264	+	159	16803202	-	lmo1162	-	hypothetical protein
1155	 40.53	0	1190269..1190532	+	87	16803203	-	lmo1163	-	hypothetical protein
1156	 41.06	0	1190547..1191542	+	331	16803204	-	lmo1164	-	ATP:cob(I)alamin adenosyltransferase protein PduO
1157	 40.43	0	1191549..1192958	+	469	16803205	-	lmo1165	-	hypothetical protein
1158	 41.64	+1	1192974..1194092	+	372	16803206	-	lmo1166	-	hypothetical protein
1159	 40.85	0	1194120..1194824	+	234	16803207	glpF	lmo1167	-	hypothetical protein
1160	 40.12	0	1194890..1196083	+	397	16803208	AckA2	lmo1168	-	hypothetical protein
1161	 40.15	0	1196097..1197182	+	361	16803209	cobD	lmo1169	-	threonine-phosphate decarboxylase
1162	 40.98	0	1197172..1198047	+	291	16803210	-	lmo1170	-	hypothetical protein
1163	 38.33	0	1198637..1199776	+	379	16803211	pduQ	lmo1171	-	hypothetical protein
1164	 40.55	0	1200051..1200632	+	193	16803212	-	lmo1172	-	hypothetical protein
1165	 37.45	0	1200625..1202082	+	485	16803213	-	lmo1173	-	hypothetical protein
1166	 39.87	0	1202171..1203592	+	473	16803214	eutA	lmo1174	-	reactivating factor for ethanolamine ammonia lyase
1167	 40.59	0	1203634..1204998	+	454	16803215	eutB	lmo1175	-	hypothetical protein
1168	 38.78	0	1205018..1205899	+	293	16803216	eutC	lmo1176	-	ethanolamine ammonia-lyase small subunit
1169	 41.59	+1	1205922..1206575	+	217	16803217	-	lmo1177	-	hypothetical protein
1170	 37.36	0	1206590..1207111	+	173	16803218	-	lmo1178	-	hypothetical protein
1171	 39.63	0	1207111..1208571	+	486	16803219	-	lmo1179	-	hypothetical protein
1172	 47.37	+2	1208603..1208887	+	94	16803220	-	lmo1180	-	hypothetical protein
1173	 35.85	0	1209053..1209808	+	251	16803221	-	lmo1181	-	hypothetical protein
1174	 38.32	0	1209821..1210462	+	213	16803222	-	lmo1182	-	hypothetical protein
1175	 37.17	0	1210459..1211031	+	190	16803223	-	lmo1183	-	hypothetical protein
1176	 45.19	+2	1211046..1211315	+	89	16803224	-	lmo1184	-	hypothetical protein
1177	 39.19	0	1211308..1211853	+	181	16803225	-	lmo1185	-	hypothetical protein
1178	 39.48	0	1211869..1212990	+	373	16803226	-	lmo1186	-	hypothetical protein
1179	 36.04	0	1212983..1213426	+	147	16803227	-	lmo1187	-	hypothetical protein
1180	 31.82	-1	1213636..1215087	+	483	16803228	-	lmo1188	-	hypothetical protein
1181	 31.70	-1	1215128..1215679	-	183	16803229	-	lmo1189	-	hypothetical protein
1182	 40.00	0	1215993..1216487	+	164	16803230	-	lmo1190	-	hypothetical protein
1183	 42.24	+1	1216820..1218178	+	452	16803231	cbiA	lmo1191	-	cobyrinic acid a,c-diamide synthase
1184	 41.14	0	1218175..1219122	+	315	16803232	cobD	lmo1192	-	cobalamin biosynthesis protein
1185	 38.39	0	1219135..1219767	+	210	16803233	cbiC	lmo1193	-	precorrin-8X methylmutase
1186	 42.60	+1	1219783..1220904	+	373	16803234	cbiD	lmo1194	-	cobalt-precorrin-6A synthase
1187	 35.68	0	1220901..1221497	+	198	16803235	cbiE	lmo1195	-	cobalt-precorrin-6Y C(5)-methyltransferase
1188	 38.25	0	1221487..1222056	+	189	16803236	-	lmo1196	-	cobalt-precorrin-6Y C(15)-methyltransferase
1189	 40.80	0	1222062..1222811	+	249	16803237	cbiF	lmo1197	-	hypothetical protein
1190	 41.86	+1	1222798..1223829	+	343	16803238	cbiG	lmo1198	-	cobalamin biosynthesis protein CbiG
1191	 40.77	0	1223826..1224551	+	241	16803239	cbiH	lmo1199	-	precorrin-3B C17-methyltransferase
1192	 39.44	0	1224548..1225300	+	250	16803240	-	lmo1200	-	hypothetical protein
1193	 39.95	0	1225300..1226781	+	493	16803241	-	lmo1201	-	hypothetical protein
1194	 38.80	0	1226778..1227563	+	261	16803242	cbiK	lmo1202	-	hypothetical protein
1195	 37.97	0	1227556..1228266	+	236	16803243	cbiL	lmo1203	-	cobalt-precorrin-2 C(20)-methyltransferase
1196	 42.40	+1	1228347..1228997	+	216	161410730	-	lmo1204	-	cobalt transport protein CbiM
1197	 38.38	0	1228994..1229290	+	98	16803245	-	lmo1205	-	cobalt transport protein CbiN
1198	 35.69	0	1229277..1229954	+	225	16803246	cbiQ	lmo1206	-	hypothetical protein
1199	 38.54	0	1229967..1230773	+	268	16803247	-	lmo1207	-	hypothetical protein
1200	 41.28	0	1230773..1232308	+	511	16803248	cbiP	lmo1208	-	cobyric acid synthase
1201	 40.56	0	1232272..1232838	+	188	16803249	-	lmo1209	-	hypothetical protein
1202	 38.25	0	1232884..1233351	-	155	16803250	-	lmo1210	-	hypothetical protein
1203	 36.22	0	1233366..1233815	-	149	16803251	-	lmo1211	-	hypothetical protein
1204	 34.27	-1	1233904..1234434	+	176	16803252	-	lmo1212	-	hypothetical protein
1205	 37.50	0	1234465..1234776	+	103	16803253	-	lmo1213	-	hypothetical protein
1206	 34.06	-1	1234779..1235330	+	183	16803254	-	lmo1214	-	hypothetical protein
1207	 36.21	0	1235670..1236539	+	289	16803255	-	lmo1215	-	hypothetical protein
1208	 37.99	0	1236836..1237822	+	328	16803256	-	lmo1216	-	hypothetical protein
1209	 40.46	0	1237934..1239013	+	359	16803257	-	lmo1217	-	hypothetical protein
1210	 39.53	0	1239039..1239797	+	252	16803258	-	lmo1218	-	hypothetical protein
1211	 37.78	0	1239842..1240201	-	119	16803259	-	lmo1219	-	hypothetical protein
1212	 41.67	+1	1240358..1240681	+	107	16803260	-	lmo1220	-	hypothetical protein
1213	 39.98	0	1241048..1242100	+	350	16803261	pheS	lmo1221	-	phenylalanyl-tRNA synthetase subunit alpha
1214	 41.34	0	1242100..1244508	+	802	16803262	pheT	lmo1222	-	phenylalanyl-tRNA synthetase beta subunit
1215	 38.75	0	1244669..1245370	+	233	16803263	-	lmo1223	-	hypothetical protein
1216	 36.53	0	1245384..1248794	+	1136	16803264	-	lmo1224	-	hypothetical protein
1217	 35.98	0	1248892..1249344	+	150	16803265	-	lmo1225	-	hypothetical protein
1218	 40.58	0	1249360..1252560	+	1066	16803266	-	lmo1226	-	hypothetical protein
1219	 37.33	0	1252667..1253341	+	224	16803267	-	lmo1227	-	uracil-DNA glycosylase
1220	 40.02	0	1253379..1254305	-	308	16803268	rnhC	lmo1228	-	ribonuclease HIII
1221	 39.77	0	1254459..1254722	+	87	16803269	-	lmo1229	-	hypothetical protein
1222	 34.99	0	1254722..1255264	+	180	16803270	-	lmo1230	-	hypothetical protein
1223	 39.40	0	1255357..1257069	+	570	16803271	-	lmo1231	-	hypothetical protein
1224	 40.08	0	1257092..1259449	+	785	16803272	-	lmo1232	-	recombination and DNA strand exchange inhibitor protein
1225	 40.71	0	1259530..1259841	+	103	16803273	trxA	lmo1233	-	thioredoxin
1226	 39.62	0	1259917..1261728	+	603	16803274	uvrC	lmo1234	-	excinuclease ABC subunit C
1227	 40.41	0	1261917..1263131	+	404	16803275	-	lmo1235	-	aspartate kinase
1228	 36.57	0	1263187..1263681	-	164	16803276	-	lmo1236	-	hypothetical protein
1229	 39.95	0	1263829..1264629	+	266	16803277	racE	lmo1237	-	hypothetical protein
1230	 42.57	+1	1264642..1265388	+	248	16803278	rph	lmo1238	-	ribonuclease PH
1231	 40.03	0	1265392..1266003	+	203	16803279	-	lmo1239	-	hypothetical protein
1232	 43.24	+1	1266040..1266564	+	174	16803280	-	lmo1240	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.