IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
998	 39.18	0	1036971..1038116	-	381	16803046	-	lmo1006	-	hypothetical protein
999	 37.39	0	1038336..1038557	+	73	16803047	-	lmo1007	-	hypothetical protein
1000	 34.19	-1	1038863..1039096	+	77	16803048	-	lmo1008	-	hypothetical protein
1001	 34.44	-1	1039297..1039749	+	150	16803049	-	lmo1009	-	hypothetical protein
1002	 38.11	0	1039746..1040624	+	292	16803050	-	lmo1010	-	hypothetical protein
1003	 41.07	0	1040672..1041382	+	236	16803051	-	lmo1011	-	hypothetical protein
1004	 39.70	0	1041446..1042561	+	371	16803052	-	lmo1012	-	hypothetical protein
1005	 37.83	0	1042605..1043450	-	281	16803053	-	lmo1013	-	hypothetical protein
1006	 38.94	0	1043821..1045014	+	397	16803054	gbuA	lmo1014	-	hypothetical protein
1007	 39.81	0	1045007..1045855	+	282	16803055	gbuB	lmo1015	-	hypothetical protein
1008	 38.10	0	1045869..1046771	+	300	16803056	gbuC	lmo1016	-	hypothetical protein
1009	 35.57	0	1046886..1047377	+	163	16803057	-	lmo1017	-	hypothetical protein
1010	 39.94	0	1047490..1048185	+	231	16803058	-	lmo1018	-	hypothetical protein
1011	 38.83	0	1048266..1049138	+	290	16803059	-	lmo1019	-	hypothetical protein
1012	 38.10	0	1049273..1049986	+	237	16803060	-	lmo1020	-	hypothetical protein
1013	 38.62	0	1049983..1051041	+	352	16803061	-	lmo1021	-	hypothetical protein
1014	 38.65	0	1051038..1051676	+	212	16803062	-	lmo1022	-	hypothetical protein
1015	 39.39	0	1051695..1052354	+	219	16803063	-	lmo1023	-	hypothetical protein
1016	 35.07	0	1052509..1053429	+	306	16803064	-	lmo1024	-	hypothetical protein
1017	 34.62	-1	1053426..1054277	+	283	16803065	-	lmo1025	-	hypothetical protein
1018	 35.40	0	1054319..1055284	-	321	16803066	-	lmo1026	-	hypothetical protein
1019	 38.67	0	1055393..1057060	-	555	16803067	-	lmo1027	-	hypothetical protein
1020	 35.71	0	1057067..1057276	-	69	16803068	-	lmo1028	-	hypothetical protein
1021	 38.52	0	1057761..1058531	+	256	16803069	-	lmo1029	-	hypothetical protein
1022	 36.25	0	1058580..1059608	-	342	16803070	-	lmo1030	-	hypothetical protein
1023	 38.03	0	1059872..1061275	+	467	16803071	-	lmo1031	-	hypothetical protein
1024	 39.88	0	1061291..1062115	+	274	16803072	-	lmo1032	-	hypothetical protein
1025	 39.81	0	1062108..1063064	+	318	16803073	-	lmo1033	-	hypothetical protein
1026	 38.18	0	1063061..1064524	+	487	16803074	-	lmo1034	-	hypothetical protein
1027	 37.00	0	1064521..1066377	+	618	16803075	-	lmo1035	-	hypothetical protein
1028	 36.73	0	1066397..1067662	+	421	16803076	-	lmo1036	-	hypothetical protein
1029	 34.83	0	1067723..1068526	-	267	16803077	-	lmo1037	-	hypothetical protein
1030	 40.21	0	1068594..1069175	-	193	16803078	-	lmo1038	-	hypothetical protein
1031	 37.56	0	1069156..1069818	-	220	16803079	-	lmo1039	-	hypothetical protein
1032	 38.39	0	1069821..1070492	-	223	16803080	-	lmo1040	-	hypothetical protein
1033	 38.78	0	1070597..1071367	+	256	16803081	-	lmo1041	-	hypothetical protein
1034	 39.54	0	1071462..1072685	+	407	16803082	-	lmo1042	-	hypothetical protein
1035	 37.24	0	1072664..1073149	+	161	16803083	-	lmo1043	-	hypothetical protein
1036	 40.66	0	1073146..1073568	+	140	16803084	-	lmo1044	-	hypothetical protein
1037	 38.15	0	1073552..1073800	+	82	16803085	-	lmo1045	-	hypothetical protein
1038	 41.41	+1	1073813..1074295	+	160	16803086	moaC	lmo1046	-	molybdenum cofactor biosynthesis protein C
1039	 38.72	0	1074324..1075325	+	333	16803087	moaA	lmo1047	-	molybdenum cofactor biosynthesis protein A
1040	 41.51	+1	1075360..1075848	-	162	16803088	-	lmo1048	-	hypothetical protein
1041	 37.94	0	1075860..1076858	-	332	16803089	-	lmo1049	-	hypothetical protein
1042	 37.66	0	1076989..1077543	+	184	16803090	-	lmo1050	-	hypothetical protein
1043	 39.49	0	1077592..1078143	-	183	16803091	def	lmo1051	-	peptide deformylase
1044	 40.32	0	1078977..1080092	+	371	16803092	pdhA	lmo1052	-	hypothetical protein
1045	 41.21	0	1080095..1081072	+	325	16803093	PdhB	lmo1053	-	hypothetical protein
1046	 40.67	0	1081183..1082817	+	544	16803094	pdhC	lmo1054	-	dihydrolipoamide acetyltransferase
1047	 41.81	+1	1082822..1084225	+	467	16803095	PdhD	lmo1055	-	dihydrolipoamide dehydrogenase
1048	 36.54	0	1084413..1084724	+	103	16803096	-	lmo1056	-	hypothetical protein
1049	 36.48	0	1084853..1085806	+	317	16803097	-	lmo1057	-	hypothetical protein
1050	 38.10	0	1085806..1086078	+	90	16803098	-	lmo1058	-	hypothetical protein
1051	 36.35	0	1086100..1086630	+	176	16803099	-	lmo1059	-	hypothetical protein
1052	 35.14	0	1086772..1087434	+	220	16803100	-	lmo1060	-	hypothetical protein
1053	 31.40	-1	1087409..1088854	+	481	16803101	-	lmo1061	-	hypothetical protein
1054	 34.46	-1	1088941..1090362	+	473	16803102	-	lmo1062	-	hypothetical protein
1055	 33.33	-1	1090375..1091043	+	222	16803103	-	lmo1063	-	hypothetical protein
1056	 35.03	0	1091110..1092054	-	314	16803104	-	lmo1064	-	hypothetical protein
1057	 37.72	0	1092255..1092869	-	204	16803105	-	lmo1065	-	hypothetical protein
1058	 39.79	0	1093000..1093773	+	257	16803106	-	lmo1066	-	hypothetical protein
1059	 39.48	0	1093965..1095803	+	612	16803107	-	lmo1067	-	hypothetical protein
1060	 32.98	-1	1095975..1096835	+	286	16803108	-	lmo1068	-	hypothetical protein
1061	 31.28	-1	1096874..1097116	-	80	16803109	-	lmo1069	-	hypothetical protein
1062	 35.82	0	1097322..1097603	+	93	16803110	-	lmo1070	-	hypothetical protein
1063	 36.16	0	1097786..1098988	+	400	16803111	-	lmo1071	-	hypothetical protein
1064	 39.15	0	1099266..1102706	+	1146	16803112	pycA	lmo1072	-	pyruvate carboxylase
1065	 35.22	0	1102858..1103757	+	299	16803113	-	lmo1073	-	hypothetical protein
1066	 31.97	-1	1104048..1104851	+	267	16803114	-	lmo1074	-	hypothetical protein
1067	 32.44	-1	1104863..1105864	+	333	16803115	-	lmo1075	-	hypothetical protein
1068	 36.59	0	1106041..1107759	+	572	16803116	-	lmo1076	-	hypothetical protein
1069	 31.97	-1	1107975..1109663	+	562	16803117	-	lmo1077	-	hypothetical protein
1070	 35.17	0	1109705..1110577	-	290	16803118	-	lmo1078	-	hypothetical protein
1071	 33.23	-1	1110769..1113627	+	952	16803119	-	lmo1079	-	hypothetical protein
1072	 32.37	-1	1113759..1115630	+	623	16803120	-	lmo1080	-	hypothetical protein
1073	 35.29	0	1115647..1116513	+	288	16803121	-	lmo1081	-	hypothetical protein
1074	 36.19	0	1116532..1117092	+	186	16803122	-	lmo1082	-	hypothetical protein
1075	 33.23	-1	1117093..1118079	+	328	16803123	-	lmo1083	-	hypothetical protein
1076	 33.33	-1	1118082..1118912	+	276	16803124	-	lmo1084	-	hypothetical protein
1077	 32.33	-1	1118932..1121022	+	696	16803125	-	lmo1085	-	hypothetical protein
1078	 32.35	-1	1121098..1121808	+	236	16803126	ispD	lmo1086	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1079	 36.55	0	1121805..1122830	+	341	16803127	-	lmo1087	-	hypothetical protein
1080	 32.21	-1	1122918..1124078	+	386	16803128	tagB	lmo1088	-	hypothetical protein
1081	 33.33	-1	1124079..1124462	+	127	16803129	tagD	lmo1089	-	hypothetical protein
1082	 33.13	-1	1124484..1125467	+	327	16803130	-	lmo1090	-	hypothetical protein
1083	 33.43	-1	1125482..1126495	+	337	16803131	-	lmo1091	-	hypothetical protein
1084	 39.30	0	1126704..1128194	+	496	16803132	-	lmo1092	-	nicotinate phosphoribosyltransferase
1085	 42.67	+1	1128206..1129030	+	274	16803133	nadE	lmo1093	-	NAD synthetase
1086	 40.13	0	1129043..1129351	+	102	16803134	-	lmo1094	-	hypothetical protein
1087	 42.96	+1	1129412..1129816	+	134	16803135	-	lmo1095	-	hypothetical protein
1088	 42.97	+1	1129945..1131501	+	518	16803136	guaA	lmo1096	-	bifunctional GMP synthase/glutamine amidotransferase protein
1089	 33.83	-1	1131558..1132760	-	400	16803137	-	lmo1097	-	hypothetical protein
1090	 29.87	-2	1133466..1133696	-	76	16803138	-	lmo1098	-	hypothetical protein
1091	 31.90	-1	1133698..1134117	-	139	16803139	-	lmo1099	-	hypothetical protein
1092	 34.23	-1	1134472..1136595	-	707	16803140	cadA	lmo1100	-	cadmium resistance protein
1093	 29.14	-2	1136900..1137400	+	166	16803141	-	lmo1101	-	hypothetical protein
1094	 27.98	-2	1137533..1137868	-	111	16803142	-	lmo1102	-	hypothetical protein
1095	 34.10	-1	1137997..1138914	-	305	16803143	-	lmo1103	-	hypothetical protein
1096	 40.45	0	1138930..1139940	-	336	16803144	-	lmo1104	-	hypothetical protein
1097	 38.89	0	1139940..1142099	-	719	16803145	-	lmo1105	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.