IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
960	 39.25	0	999722..1000516	+	264	16803008	ppnK	lmo0968	-	inorganic polyphosphate/ATP-NAD kinase
961	 38.38	0	1000535..1001425	+	296	16803009	-	lmo0969	-	hypothetical protein
962	 38.78	0	1001503..1002291	+	262	16803010	-	lmo0970	-	enoyl-(acyl carrier protein) reductase
963	 36.39	0	1002319..1003593	-	424	16803011	dltD	lmo0971	-	DltD protein for D-alanine esterification of lipoteichoic acid and wall teichoic acid
964	 32.91	-1	1003593..1003829	-	78	16803012	dltC	lmo0972	-	D-alanine--poly(phosphoribitol) ligase subunit 2
965	 35.61	0	1003855..1005039	-	394	16803013	dltB	lmo0973	-	DltB protein for D-alanine esterification of lipoteichoic acid and wall teichoic acid
966	 38.10	0	1005036..1006568	-	510	16803014	dltA	lmo0974	-	D-alanine--D-alanyl carrier protein ligase
967	 36.44	0	1006959..1007633	+	224	16803015	-	lmo0975	-	hypothetical protein
968	 41.22	0	1007669..1008112	-	147	16803016	-	lmo0976	-	hypothetical protein
969	 36.80	0	1008130..1008879	-	249	16803017	-	lmo0977	-	hypothetical protein
970	 38.63	0	1009098..1010117	+	339	16803018	-	lmo0978	-	branched-chain amino acid aminotransferase
971	 40.26	0	1010313..1011077	+	254	16803019	-	lmo0979	-	hypothetical protein
972	 38.91	0	1011074..1011826	+	250	16803020	-	lmo0980	-	hypothetical protein
973	 39.57	0	1011860..1013335	-	491	16803021	-	lmo0981	-	hypothetical protein
974	 38.08	0	1013475..1014527	+	350	16803022	-	lmo0982	-	hypothetical protein
975	 32.71	-1	1014540..1015019	+	159	16803023	-	lmo0983	-	hypothetical protein
976	 33.11	-1	1015153..1015608	+	151	16803024	-	lmo0984	-	hypothetical protein
977	 34.73	0	1015605..1016033	+	142	16803025	-	lmo0985	-	hypothetical protein
978	 36.29	0	1016030..1016941	+	303	16803026	-	lmo0986	-	hypothetical protein
979	 36.73	0	1016934..1017788	+	284	16803027	-	lmo0987	-	hypothetical protein
980	 40.41	0	1017870..1019438	+	522	16803028	prfC	lmo0988	-	peptide chain release factor 3
981	 36.85	0	1019545..1019970	+	141	16803029	-	lmo0989	-	hypothetical protein
982	 39.50	0	1020022..1021383	+	453	16803030	-	lmo0990	-	hypothetical protein
983	 39.84	0	1021665..1022432	+	255	16803031	-	lmo0991	-	hypothetical protein
984	 38.93	0	1022535..1023302	+	255	16803032	-	lmo0992	-	hypothetical protein
985	 37.90	0	1023346..1024680	+	444	16803033	-	lmo0993	-	hypothetical protein
986	 34.69	0	1024761..1025129	-	122	16803034	-	lmo0994	-	hypothetical protein
987	 33.62	-1	1025159..1026190	-	343	16803035	-	lmo0995	-	hypothetical protein
988	 37.71	0	1026376..1026855	+	159	16803036	-	lmo0996	-	hypothetical protein
989	 39.72	0	1026871..1029045	-	724	16803037	clpE	lmo0997	-	ATP-dependent protease
990	 35.29	0	1029208..1029819	-	203	16803038	-	lmo0998	-	hypothetical protein
991	 34.97	0	1029965..1030756	+	263	16803039	-	lmo0999	-	hypothetical protein
992	 35.64	0	1030757..1032229	-	490	16803040	-	lmo1000	-	hypothetical protein
993	 32.63	-1	1032333..1032617	-	94	16803041	-	lmo1001	-	hypothetical protein
994	 39.33	0	1032924..1033190	+	88	16803042	ptsH	lmo1002	-	phosphocarrier protein HPr
995	 38.86	0	1033190..1034908	+	572	16803043	-	lmo1003	-	phosphotransferase system enzyme I
996	 33.33	-1	1035021..1036055	+	344	16803044	-	lmo1004	-	hypothetical protein
997	 40.53	0	1036068..1036928	+	286	16803045	-	lmo1005	-	hypothetical protein
998	 39.18	0	1036971..1038116	-	381	16803046	-	lmo1006	-	hypothetical protein
999	 37.39	0	1038336..1038557	+	73	16803047	-	lmo1007	-	hypothetical protein
1000	 34.19	-1	1038863..1039096	+	77	16803048	-	lmo1008	-	hypothetical protein
1001	 34.44	-1	1039297..1039749	+	150	16803049	-	lmo1009	-	hypothetical protein
1002	 38.11	0	1039746..1040624	+	292	16803050	-	lmo1010	-	hypothetical protein
1003	 41.07	0	1040672..1041382	+	236	16803051	-	lmo1011	-	hypothetical protein
1004	 39.70	0	1041446..1042561	+	371	16803052	-	lmo1012	-	hypothetical protein
1005	 37.83	0	1042605..1043450	-	281	16803053	-	lmo1013	-	hypothetical protein
1006	 38.94	0	1043821..1045014	+	397	16803054	gbuA	lmo1014	-	hypothetical protein
1007	 39.81	0	1045007..1045855	+	282	16803055	gbuB	lmo1015	-	hypothetical protein
1008	 38.10	0	1045869..1046771	+	300	16803056	gbuC	lmo1016	-	hypothetical protein
1009	 35.57	0	1046886..1047377	+	163	16803057	-	lmo1017	-	hypothetical protein
1010	 39.94	0	1047490..1048185	+	231	16803058	-	lmo1018	-	hypothetical protein
1011	 38.83	0	1048266..1049138	+	290	16803059	-	lmo1019	-	hypothetical protein
1012	 38.10	0	1049273..1049986	+	237	16803060	-	lmo1020	-	hypothetical protein
1013	 38.62	0	1049983..1051041	+	352	16803061	-	lmo1021	-	hypothetical protein
1014	 38.65	0	1051038..1051676	+	212	16803062	-	lmo1022	-	hypothetical protein
1015	 39.39	0	1051695..1052354	+	219	16803063	-	lmo1023	-	hypothetical protein
1016	 35.07	0	1052509..1053429	+	306	16803064	-	lmo1024	-	hypothetical protein
1017	 34.62	-1	1053426..1054277	+	283	16803065	-	lmo1025	-	hypothetical protein
1018	 35.40	0	1054319..1055284	-	321	16803066	-	lmo1026	-	hypothetical protein
1019	 38.67	0	1055393..1057060	-	555	16803067	-	lmo1027	-	hypothetical protein
1020	 35.71	0	1057067..1057276	-	69	16803068	-	lmo1028	-	hypothetical protein
1021	 38.52	0	1057761..1058531	+	256	16803069	-	lmo1029	-	hypothetical protein
1022	 36.25	0	1058580..1059608	-	342	16803070	-	lmo1030	-	hypothetical protein
1023	 38.03	0	1059872..1061275	+	467	16803071	-	lmo1031	-	hypothetical protein
1024	 39.88	0	1061291..1062115	+	274	16803072	-	lmo1032	-	hypothetical protein
1025	 39.81	0	1062108..1063064	+	318	16803073	-	lmo1033	-	hypothetical protein
1026	 38.18	0	1063061..1064524	+	487	16803074	-	lmo1034	-	hypothetical protein
1027	 37.00	0	1064521..1066377	+	618	16803075	-	lmo1035	-	hypothetical protein
1028	 36.73	0	1066397..1067662	+	421	16803076	-	lmo1036	-	hypothetical protein
1029	 34.83	0	1067723..1068526	-	267	16803077	-	lmo1037	-	hypothetical protein
1030	 40.21	0	1068594..1069175	-	193	16803078	-	lmo1038	-	hypothetical protein
1031	 37.56	0	1069156..1069818	-	220	16803079	-	lmo1039	-	hypothetical protein
1032	 38.39	0	1069821..1070492	-	223	16803080	-	lmo1040	-	hypothetical protein
1033	 38.78	0	1070597..1071367	+	256	16803081	-	lmo1041	-	hypothetical protein
1034	 39.54	0	1071462..1072685	+	407	16803082	-	lmo1042	-	hypothetical protein
1035	 37.24	0	1072664..1073149	+	161	16803083	-	lmo1043	-	hypothetical protein
1036	 40.66	0	1073146..1073568	+	140	16803084	-	lmo1044	-	hypothetical protein
1037	 38.15	0	1073552..1073800	+	82	16803085	-	lmo1045	-	hypothetical protein
1038	 41.41	+1	1073813..1074295	+	160	16803086	moaC	lmo1046	-	molybdenum cofactor biosynthesis protein C
1039	 38.72	0	1074324..1075325	+	333	16803087	moaA	lmo1047	-	molybdenum cofactor biosynthesis protein A
1040	 41.51	+1	1075360..1075848	-	162	16803088	-	lmo1048	-	hypothetical protein
1041	 37.94	0	1075860..1076858	-	332	16803089	-	lmo1049	-	hypothetical protein
1042	 37.66	0	1076989..1077543	+	184	16803090	-	lmo1050	-	hypothetical protein
1043	 39.49	0	1077592..1078143	-	183	16803091	def	lmo1051	-	peptide deformylase
1044	 40.32	0	1078977..1080092	+	371	16803092	pdhA	lmo1052	-	hypothetical protein
1045	 41.21	0	1080095..1081072	+	325	16803093	PdhB	lmo1053	-	hypothetical protein
1046	 40.67	0	1081183..1082817	+	544	16803094	pdhC	lmo1054	-	dihydrolipoamide acetyltransferase
1047	 41.81	+1	1082822..1084225	+	467	16803095	PdhD	lmo1055	-	dihydrolipoamide dehydrogenase
1048	 36.54	0	1084413..1084724	+	103	16803096	-	lmo1056	-	hypothetical protein
1049	 36.48	0	1084853..1085806	+	317	16803097	-	lmo1057	-	hypothetical protein
1050	 38.10	0	1085806..1086078	+	90	16803098	-	lmo1058	-	hypothetical protein
1051	 36.35	0	1086100..1086630	+	176	16803099	-	lmo1059	-	hypothetical protein
1052	 35.14	0	1086772..1087434	+	220	16803100	-	lmo1060	-	hypothetical protein
1053	 31.40	-1	1087409..1088854	+	481	16803101	-	lmo1061	-	hypothetical protein
1054	 34.46	-1	1088941..1090362	+	473	16803102	-	lmo1062	-	hypothetical protein
1055	 33.33	-1	1090375..1091043	+	222	16803103	-	lmo1063	-	hypothetical protein
1056	 35.03	0	1091110..1092054	-	314	16803104	-	lmo1064	-	hypothetical protein
1057	 37.72	0	1092255..1092869	-	204	16803105	-	lmo1065	-	hypothetical protein
1058	 39.79	0	1093000..1093773	+	257	16803106	-	lmo1066	-	hypothetical protein
1059	 39.48	0	1093965..1095803	+	612	16803107	-	lmo1067	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.